| Back to Long Tests report for BioC 3.20 |
This page was generated on 2024-12-07 23:55 -0500 (Sat, 07 Dec 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4739 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4482 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4510 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 6/32 | Hostname | OS / Arch | CHECK | |||||||
| biodbChebi 1.12.0 (landing page) Pierrick Roger
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | |||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | ||||||||
|
To the developers/maintainers of the biodbChebi package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: biodbChebi |
| Version: 1.12.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.12.0.tar.gz |
| StartedAt: 2024-12-07 16:01:28 -0500 (Sat, 07 Dec 2024) |
| EndedAt: 2024-12-07 16:06:21 -0500 (Sat, 07 Dec 2024) |
| EllapsedTime: 293.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: biodbChebi.Rcheck |
| Warnings: 0 |
biodbChebi.Rcheck/tests/testthat.Rout
R version 4.4.2 (2024-10-31) -- "Pile of Leaves"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2024-12-07 16:02:20.275][biodb::testContext]
biodb.INFO [2024-12-07 16:02:20.279][biodb::testContext] ********************************************************************************
biodb.INFO [2024-12-07 16:02:20.281][biodb::testContext] Test context - Generic long tests
biodb.INFO [2024-12-07 16:02:20.282][biodb::testContext] ********************************************************************************
biodb.INFO [2024-12-07 16:02:20.284][biodb::testContext]
biodb.INFO [2024-12-07 16:02:20.292][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2024-12-07 16:02:20.295][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-12-07 16:02:20.306][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-12-07 16:02:20.307][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-12-07 16:02:20.309][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-12-07 16:02:20.310][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:20.311][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:20.313][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:20.314][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-12-07 16:02:20.345][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-12-07 16:02:20.347][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:20.348][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:20.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:20.351][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-12-07 16:02:20.353][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-12-07 16:02:20.354][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:20.355][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:20.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:20.358][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-12-07 16:02:20.360][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-12-07 16:02:20.372][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-12-07 16:02:20.373][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:20.374][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:20.375][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:20.376][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-12-07 16:02:20.378][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-12-07 16:02:20.379][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-12-07 16:02:20.380][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:20.381][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:20.382][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:20.383][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-12-07 16:02:20.385][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-12-07 16:02:20.386][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:20.387][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:20.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:20.389][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-12-07 16:02:20.390][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-12-07 16:02:20.391][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-12-07 16:02:20.393][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:20.394][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:20.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:20.396][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-12-07 16:02:20.397][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-12-07 16:02:20.398][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:20.399][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:20.400][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:20.402][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-12-07 16:02:20.403][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-12-07 16:02:20.404][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-12-07 16:02:20.405][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:20.406][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:20.407][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:20.408][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-12-07 16:02:20.410][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-12-07 16:02:20.411][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-12-07 16:02:20.412][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-12-07 16:02:20.413][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-12-07 16:02:20.415][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-12-07 16:02:20.416][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:20.417][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:20.418][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:20.419][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-12-07 16:02:20.420][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-12-07 16:02:20.421][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:20.423][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:20.424][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:20.425][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-12-07 16:02:20.426][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-12-07 16:02:20.427][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:20.428][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:20.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:20.431][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-12-07 16:02:20.432][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-12-07 16:02:20.433][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:20.434][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:20.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:20.436][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-12-07 16:02:20.437][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-12-07 16:02:20.439][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:20.440][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:20.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:20.442][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-12-07 16:02:20.443][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-12-07 16:02:20.444][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:20.445][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:20.446][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:20.448][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-12-07 16:02:20.449][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-12-07 16:02:20.461][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-12-07 16:02:20.462][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:20.463][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:20.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:20.465][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-12-07 16:02:20.467][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-12-07 16:02:20.468][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-12-07 16:02:20.469][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:20.470][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:20.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:20.475][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-12-07 16:02:20.519][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-12-07 16:02:20.541][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-12-07 16:02:20.542][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:20.543][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-07 16:02:20.545][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:20.546][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-07 16:02:20.547][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-12-07 16:02:20.548][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-07 16:02:20.549][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-12-07 16:02:20.551][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-07 16:02:20.552][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:20.553][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-12-07 16:02:20.554][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-07 16:02:20.556][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:02:20.557][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:20.558][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-12-07 16:02:20.558][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-12-07 16:02:20.558][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-12-07 16:02:20.558][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-12-07 16:02:20.558][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-12-07 16:02:20.560][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-12-07 16:02:20.561][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:02:20.562][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:02:20.563][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-07 16:02:20.565][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:02:20.566][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:02:20.567][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-07 16:02:20.568][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:02:20.570][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-07 16:02:20.571][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-07 16:02:20.572][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-12-07 16:02:20.573][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:02:20.575][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-12-07 16:02:20.577][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-12-07 16:02:20.578][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-12-07 16:02:20.579][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:20.580][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-07 16:02:20.582][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:20.583][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-07 16:02:20.584][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-12-07 16:02:20.585][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-07 16:02:20.586][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-12-07 16:02:20.588][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-07 16:02:20.589][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:20.590][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-12-07 16:02:20.591][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-07 16:02:20.593][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:02:20.594][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:20.595][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-12-07 16:02:20.595][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-12-07 16:02:20.595][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-12-07 16:02:20.595][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-12-07 16:02:20.595][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-12-07 16:02:20.596][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-12-07 16:02:20.598][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:02:20.599][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:02:20.600][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-07 16:02:20.601][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:02:20.602][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:02:20.603][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-07 16:02:20.605][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:02:20.606][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-07 16:02:20.607][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-07 16:02:20.608][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-12-07 16:02:20.609][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:02:20.611][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-12-07 16:02:20.613][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:20.614][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-12-07 16:02:20.615][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:20.617][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-07 16:02:20.618][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:20.619][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-07 16:02:20.620][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-12-07 16:02:20.626][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-07 16:02:20.628][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-12-07 16:02:20.629][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-07 16:02:20.630][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-12-07 16:02:20.631][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-12-07 16:02:20.633][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-07 16:02:20.634][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:02:20.635][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:20.636][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:02:20.637][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-12-07 16:02:20.639][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:02:20.640][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:02:20.641][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-07 16:02:20.642][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:02:20.643][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:02:20.644][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-07 16:02:20.646][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:02:20.647][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-07 16:02:20.648][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-07 16:02:20.649][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-12-07 16:02:20.650][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:02:20.652][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-12-07 16:02:20.654][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:20.655][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-12-07 16:02:20.657][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:20.658][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-07 16:02:20.659][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:20.661][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-07 16:02:20.662][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-12-07 16:02:20.663][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-07 16:02:20.664][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-12-07 16:02:20.665][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-07 16:02:20.667][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-12-07 16:02:20.668][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-12-07 16:02:20.669][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-07 16:02:20.670][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:02:20.671][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:20.673][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:02:20.674][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-12-07 16:02:20.675][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:02:20.676][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:02:20.677][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-07 16:02:20.679][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:02:20.680][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:02:20.681][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-07 16:02:20.682][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:02:20.683][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-07 16:02:20.684][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-07 16:02:20.686][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-12-07 16:02:20.687][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:02:20.691][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-12-07 16:02:20.692][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:20.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:20.694][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:20.696][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:20.697][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:20.698][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:20.699][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:20.700][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:20.701][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:20.702][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:20.703][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:20.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:20.706][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:20.707][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:20.708][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:20.709][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:20.710][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:20.711][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:20.712][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:20.713][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:20.714][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:20.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:20.716][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:20.717][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:20.719][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:20.720][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:20.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:20.722][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:20.723][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:20.724][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:20.725][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:20.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:20.727][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:20.728][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:20.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:20.731][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:20.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:20.733][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:20.734][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:20.735][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:20.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:20.737][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:20.738][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:20.739][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:20.740][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:20.741][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:20.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:20.744][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:20.745][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:20.746][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:20.747][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:20.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:20.749][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:20.750][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:20.751][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:20.752][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:20.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:20.755][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:20.756][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:20.757][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:20.758][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:20.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:20.760][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:20.761][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:20.762][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:20.763][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:20.764][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:20.765][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:20.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:20.768][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:20.769][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:20.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:20.771][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:20.772][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:20.773][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:20.774][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:20.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:20.776][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:20.777][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:20.778][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:20.780][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:20.781][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:20.782][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:20.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:20.784][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:20.785][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:20.786][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:20.787][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-12-07 16:02:20.792][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-12-07 16:02:20.794][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-12-07 16:02:20.795][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-12-07 16:02:20.797][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-12-07 16:02:20.799][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-12-07 16:02:20.801][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-12-07 16:02:20.802][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-12-07 16:02:20.804][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-12-07 16:02:20.806][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-12-07 16:02:20.807][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-12-07 16:02:20.809][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-12-07 16:02:20.811][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-12-07 16:02:20.812][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-12-07 16:02:20.814][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-12-07 16:02:20.816][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-12-07 16:02:20.817][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-12-07 16:02:20.819][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-12-07 16:02:20.821][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-12-07 16:02:20.823][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-12-07 16:02:20.824][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-12-07 16:02:20.826][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-12-07 16:02:20.828][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-12-07 16:02:20.829][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-12-07 16:02:20.831][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-12-07 16:02:20.833][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-12-07 16:02:20.834][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-12-07 16:02:20.836][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-12-07 16:02:20.838][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-12-07 16:02:20.839][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-12-07 16:02:20.841][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-12-07 16:02:20.843][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-12-07 16:02:20.844][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-12-07 16:02:20.846][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-12-07 16:02:20.848][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-12-07 16:02:20.849][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-12-07 16:02:20.851][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-12-07 16:02:20.853][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-12-07 16:02:20.855][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-12-07 16:02:20.856][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-12-07 16:02:20.858][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-12-07 16:02:20.860][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-12-07 16:02:20.861][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-12-07 16:02:20.868][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-12-07 16:02:20.870][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-12-07 16:02:20.872][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-12-07 16:02:20.873][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-12-07 16:02:20.875][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-12-07 16:02:20.877][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-12-07 16:02:20.878][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-12-07 16:02:20.880][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-12-07 16:02:20.882][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-12-07 16:02:20.883][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-12-07 16:02:20.885][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-12-07 16:02:20.887][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-12-07 16:02:20.888][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-12-07 16:02:20.890][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-12-07 16:02:20.892][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-12-07 16:02:20.893][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-12-07 16:02:20.895][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-12-07 16:02:20.896][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-12-07 16:02:20.898][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-12-07 16:02:20.900][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-12-07 16:02:20.901][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-12-07 16:02:20.903][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-12-07 16:02:20.905][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-12-07 16:02:20.907][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-12-07 16:02:20.908][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-12-07 16:02:20.910][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-12-07 16:02:20.912][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-12-07 16:02:20.913][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-12-07 16:02:20.915][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-12-07 16:02:20.917][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-12-07 16:02:20.918][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-12-07 16:02:20.920][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-12-07 16:02:20.922][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-12-07 16:02:20.923][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-12-07 16:02:20.925][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-12-07 16:02:20.927][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-12-07 16:02:20.929][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-12-07 16:02:20.931][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-12-07 16:02:20.933][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-12-07 16:02:20.935][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-12-07 16:02:20.942][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-12-07 16:02:20.944][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2024-12-07 16:02:20.948][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-12-07 16:02:20.949][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:20.950][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:20.951][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:20.952][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:20.959][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:20.960][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:20.961][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:20.962][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:20.963][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:20.964][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:20.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:20.967][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:20.968][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:20.969][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:20.970][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:20.971][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:20.972][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:20.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:20.974][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:20.976][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:20.977][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:20.978][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:20.979][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:20.980][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:20.981][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:20.982][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:20.983][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:20.984][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:20.985][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:20.987][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:20.988][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:20.989][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:20.990][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:20.991][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:20.992][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:20.993][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:20.994][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:20.995][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:20.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:20.998][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:20.999][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:21.000][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:21.001][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:21.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:21.003][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:21.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:21.006][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:21.007][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:21.008][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:21.009][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:21.010][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:21.011][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:21.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:21.014][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:21.015][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:21.016][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:21.017][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:21.018][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:21.019][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:21.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:21.022][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:21.023][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:21.024][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:21.025][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:21.026][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:21.027][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:21.028][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:21.029][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:21.030][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:21.032][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:21.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:21.034][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:21.035][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:21.036][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:21.037][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:21.038][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:21.039][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:21.040][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:21.042][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:21.043][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:21.044][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:21.045][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:21.046][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:21.047][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:21.048][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:21.049][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:21.051][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:21.052][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:21.053][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:21.054][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:21.055][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:21.056][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:21.057][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:21.058][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:21.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:21.061][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:21.062][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:21.063][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:21.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:21.065][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:21.066][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:21.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:21.069][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:21.070][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:21.071][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:21.072][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:21.073][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:21.074][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:21.075][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:21.076][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:21.077][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:21.079][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:21.080][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:21.081][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:21.082][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:21.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:21.084][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:21.085][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:21.086][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:21.088][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:21.089][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:21.090][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:21.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:21.094][biodb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/definitions.yml".
biodb.DEBUG[2024-12-07 16:02:21.111][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2024-12-07 16:02:21.114][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-12-07 16:02:21.115][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-12-07 16:02:21.116][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:21.118][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-07 16:02:21.119][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:21.120][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-07 16:02:21.121][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:21.122][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2024-12-07 16:02:21.124][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-12-07 16:02:21.125][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-07 16:02:21.127][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:21.128][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2024-12-07 16:02:21.129][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-07 16:02:21.130][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-12-07 16:02:21.130][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2024-12-07 16:02:21.130][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-12-07 16:02:21.130][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-12-07 16:02:21.130][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-12-07 16:02:21.130][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2024-12-07 16:02:21.130][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-12-07 16:02:21.130][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-12-07 16:02:21.130][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2024-12-07 16:02:21.130][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2024-12-07 16:02:21.130][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-12-07 16:02:21.132][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-12-07 16:02:21.133][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-12-07 16:02:21.133][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-12-07 16:02:21.133][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-12-07 16:02:21.134][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-12-07 16:02:21.136][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:02:21.137][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:02:21.138][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-07 16:02:21.139][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:02:21.140][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:02:21.141][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-07 16:02:21.143][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:02:21.143][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2024-12-07 16:02:21.144][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-07 16:02:21.145][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-07 16:02:21.146][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:21.147][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2024-12-07 16:02:21.147][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2024-12-07 16:02:21.155][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-12-07 16:02:21.157][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-12-07 16:02:21.159][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2024-12-07 16:02:21.161][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-12-07 16:02:21.163][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-12-07 16:02:21.165][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-12-07 16:02:21.189][super$initialize] Initialize connector chebi.
biodb.DEBUG[2024-12-07 16:02:21.191][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2024-12-07 16:02:21.196][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2024-12-07 16:02:21.201][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2024-12-07 16:02:21.206][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-12-07 16:02:21.207][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-12-07 16:02:21.209][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2024-12-07 16:02:21.210][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2024-12-07 16:02:21.222][biodb::testThat]
biodb.INFO [2024-12-07 16:02:21.223][biodb::testThat] Running test function test.entry.fields (" Entry fields have a correct value ").
biodb.INFO [2024-12-07 16:02:21.225][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:02:21.226][biodb::testThat]
biodb.TRACE[2024-12-07 16:02:21.230][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2024-12-07 16:02:21.233][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:02:21.236][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:02:21.247][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:21.249][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:21.250][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:21.269][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:21.270][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:21.272][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:21.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:21.283][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:21.285][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:21.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.287][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:21.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:21.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.311][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:21.313][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:21.314][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.315][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.353][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:21.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:21.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.358][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:21.359][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:21.361][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.362][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.363][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:21.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:21.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.378][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:21.379][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:21.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.381][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.383][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:21.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:21.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.388][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:21.390][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:21.391][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.392][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.393][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:21.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:21.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.399][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:21.400][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:21.401][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.402][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.404][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:21.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:21.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.409][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:02:21.410][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:21.411][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.413][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.414][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:02:21.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:21.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.419][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:21.421][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:21.422][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.423][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.424][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:21.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:21.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.430][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:21.431][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:21.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.433][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.435][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:21.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:21.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.440][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:02:21.442][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:21.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.444][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.446][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:02:21.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:21.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.451][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:02:21.452][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:02:21.453][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.454][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.456][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:02:21.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:02:21.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.461][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:21.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:21.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.466][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:21.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:21.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:21.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:21.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.476][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:21.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:21.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:21.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:21.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:21.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:21.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.492][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:21.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:21.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:21.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:21.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.549][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:21.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:21.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:21.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:21.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:21.560][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2024-12-07 16:02:21.563][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:21.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:21.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.568][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:21.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:21.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.635][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:21.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:21.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.640][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:21.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:21.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.645][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:21.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:21.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.650][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:21.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:21.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.655][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-07 16:02:21.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-07 16:02:21.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.660][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-07 16:02:21.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-07 16:02:21.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.665][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-12-07 16:02:21.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-12-07 16:02:21.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.670][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-12-07 16:02:21.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-12-07 16:02:21.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:21.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:21.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.717][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:21.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:21.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:21.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:21.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:21.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:21.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:21.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:21.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:21.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:21.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:21.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:21.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:21.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:21.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.761][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:21.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:21.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.766][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:21.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:21.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.772][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:21.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:21.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:21.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:21.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.792][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:21.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:21.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:21.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:21.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.802][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:21.803][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:21.805][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.806][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.812][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:21.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:21.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.828][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:21.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:21.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.833][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:21.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:21.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.838][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:21.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:21.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.844][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:21.845][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:21.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.848][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.849][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:21.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:21.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.865][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:21.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:21.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.871][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:21.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:21.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.876][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:21.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:21.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.882][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:21.883][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:21.884][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.886][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.887][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:21.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:21.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.902][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:21.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:21.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.908][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:21.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:21.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.913][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:21.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:21.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.918][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:21.919][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:21.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.922][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.923][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:21.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:21.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.939][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:21.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:21.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.944][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:21.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:21.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.949][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:21.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:21.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.955][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:21.956][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:21.957][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.958][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.960][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:21.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:21.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.976][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:21.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:21.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.981][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:21.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:21.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.986][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:21.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:21.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.992][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:21.993][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:21.994][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:21.995][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:21.997][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:21.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:21.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.012][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:22.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:22.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.018][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:22.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:22.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.023][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:22.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:22.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.033][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:22.035][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:22.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.037][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.038][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:22.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:22.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.053][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:02:22.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:22.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.059][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:02:22.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:22.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.064][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:02:22.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:22.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.069][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:02:22.070][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:22.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.073][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.074][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:02:22.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:22.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.090][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:22.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:22.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.095][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:22.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:22.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.100][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:22.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:22.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.106][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:22.107][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:22.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.110][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.111][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:22.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:22.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.127][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:02:22.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:02:22.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.133][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:02:22.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:02:22.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.138][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:02:22.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:02:22.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.143][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:02:22.145][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:02:22.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.147][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.149][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:02:22.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:02:22.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.164][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:22.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:22.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.170][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:22.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:22.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.175][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:22.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:22.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.180][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:22.181][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:22.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.184][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.185][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:22.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:22.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.200][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:22.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:22.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.205][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:22.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:22.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.210][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:22.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:22.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.215][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:22.217][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:22.218][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.219][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.220][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:22.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:22.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.235][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:22.237][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:22.238][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.239][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.250][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:22.252][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:22.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.254][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.260][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:22.262][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:22.263][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.264][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.270][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:22.271][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:22.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.274][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.280][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:22.281][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:22.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.283][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.290][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:22.291][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:22.292][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.293][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.299][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:22.301][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:22.302][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.303][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.309][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:22.311][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:22.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.313][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.319][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:02:22.321][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:22.322][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.323][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.329][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:22.331][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:22.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.333][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.339][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:02:22.341][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:02:22.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.343][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.366][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-2528-content.xml".
biodb.DEBUG[2024-12-07 16:02:22.414][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:02:22.416][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:02:22.418][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:22.419][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:22.420][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:22.426][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:22.427][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:22.429][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:22.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:22.433][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:22.434][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:22.435][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.436][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:22.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:22.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.470][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:22.472][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:22.473][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.474][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.476][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:22.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:22.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.481][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:22.482][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:22.483][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.484][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.486][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:22.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:22.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.492][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:22.493][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:22.494][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.495][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.497][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:22.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:22.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.502][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:22.503][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:22.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.506][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.507][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:22.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:22.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.513][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:22.514][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:22.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.516][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.518][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:22.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:22.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.523][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:02:22.525][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:22.526][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.527][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.529][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:02:22.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:22.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.534][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:22.535][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:22.536][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.538][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.539][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:22.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:22.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.544][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:22.546][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:22.547][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.548][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.550][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:22.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:22.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.555][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:02:22.557][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:22.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.559][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.561][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:02:22.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:22.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.566][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:02:22.567][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:02:22.568][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.569][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.571][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:02:22.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:02:22.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.576][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:22.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:22.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.581][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:22.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:22.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:22.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:22.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.592][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:22.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:22.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.597][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:22.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:22.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:22.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:22.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.607][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:22.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:22.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:22.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:22.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:22.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:22.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:22.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:22.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:22.628][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2528.
biodb.TRACE[2024-12-07 16:02:22.659][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:22.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:22.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.664][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:22.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:22.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.669][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:22.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:22.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.674][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:22.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:22.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.679][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:22.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:22.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.684][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:22.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:22.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.689][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-07 16:02:22.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-07 16:02:22.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.694][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-07 16:02:22.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-07 16:02:22.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.699][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-12-07 16:02:22.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-12-07 16:02:22.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.704][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-12-07 16:02:22.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-12-07 16:02:22.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:22.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:22.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.722][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:22.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:22.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:22.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:22.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:22.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:22.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:22.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:22.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:22.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:22.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:22.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:22.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:22.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:22.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.765][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:22.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:22.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.770][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:22.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:22.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.775][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:22.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:22.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:22.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:22.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:22.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:22.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:22.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:22.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.818][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:22.820][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:22.821][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.822][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:22.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:22.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.838][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:22.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:22.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.849][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:22.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:22.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.854][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:22.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:22.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.859][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:22.860][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:22.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.862][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.864][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:22.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:22.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.878][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:22.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:22.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.884][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:22.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:22.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.889][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:22.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:22.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.894][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:22.895][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:22.896][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.897][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.899][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:22.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:22.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.914][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:22.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:22.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.919][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:22.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:22.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.924][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:22.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:22.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.929][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:22.930][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:22.932][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.933][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.934][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:22.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:22.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.950][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:02:22.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:22.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.955][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:22.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:22.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.960][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:22.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:22.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.965][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:02:22.967][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:22.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.969][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.970][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:02:22.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:22.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.986][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:22.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:22.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.991][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:22.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:22.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:22.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:22.996][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:22.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:22.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.002][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:23.003][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:23.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.005][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.007][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:23.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:23.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.022][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:23.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:23.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.028][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:23.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:23.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.033][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:23.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:23.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.039][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:23.040][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:23.041][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.042][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.044][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:23.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:23.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.065][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:23.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:23.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.070][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:23.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:23.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.075][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:23.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:23.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.080][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:23.082][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:23.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.084][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.085][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:23.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:23.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.101][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:02:23.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:23.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.106][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:02:23.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:23.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.111][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:02:23.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:23.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.117][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:02:23.118][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:23.119][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.121][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.122][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:02:23.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:23.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.137][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:23.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:23.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.143][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:23.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:23.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.148][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:23.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:23.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.153][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:23.154][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:23.155][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.157][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.158][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:23.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:23.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.173][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:02:23.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:02:23.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.179][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:02:23.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:02:23.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.184][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:02:23.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:02:23.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.189][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:02:23.191][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:02:23.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.193][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.194][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:02:23.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:02:23.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.210][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:23.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:23.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.217][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:23.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:23.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.222][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:23.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:23.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.227][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:23.229][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:23.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.231][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.233][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:23.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:23.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.247][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:23.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:23.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.252][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:23.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:23.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.257][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:23.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:23.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.262][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:23.263][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:23.265][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.266][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.271][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:23.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:23.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.286][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:23.288][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:23.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.290][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.297][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:23.298][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:23.300][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.301][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.307][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:23.309][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:23.310][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.311][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.318][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:23.319][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:23.320][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.322][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.328][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:23.329][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:23.331][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.332][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.338][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:23.340][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:23.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.342][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.349][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:23.350][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:23.351][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.352][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.359][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:23.360][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:23.361][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.363][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.369][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:02:23.371][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:23.372][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.373][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.379][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:23.381][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:23.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.383][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.389][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:02:23.391][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:02:23.392][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.393][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.400][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-7799-content.xml".
biodb.DEBUG[2024-12-07 16:02:23.402][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:02:23.403][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:02:23.405][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:23.406][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:23.408][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:23.414][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:23.415][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:23.416][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:23.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:23.420][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:23.422][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:23.423][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.424][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:23.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:23.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.430][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:23.432][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:23.433][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.434][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.436][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:23.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:23.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.441][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:23.442][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:23.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.445][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.446][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:23.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:23.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.451][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:23.453][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:23.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.455][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.457][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:23.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:23.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.462][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:23.464][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:23.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.466][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.468][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:23.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:23.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.473][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:23.474][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:23.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.477][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.478][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:23.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:23.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.483][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:02:23.489][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:23.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.492][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.493][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:02:23.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:23.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.498][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:23.499][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:23.501][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.502][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.503][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:23.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:23.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.508][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:23.510][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:23.511][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.512][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.514][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:23.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:23.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.519][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:02:23.520][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:23.521][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.523][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.524][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:02:23.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:23.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.529][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:02:23.531][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:02:23.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.533][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.535][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:02:23.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:02:23.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.540][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:23.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:23.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.545][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:23.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:23.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:23.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:23.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.555][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:23.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:23.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:23.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:23.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:23.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:23.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:23.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:23.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.576][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:23.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:23.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:23.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:23.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:23.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:23.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:23.591][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 7799.
biodb.TRACE[2024-12-07 16:02:23.593][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:23.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:23.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.598][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:23.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:23.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.603][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:23.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:23.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.608][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:23.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:23.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.614][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:23.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:23.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.619][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:23.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:23.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.624][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-07 16:02:23.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-07 16:02:23.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.629][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-07 16:02:23.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-07 16:02:23.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.634][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-12-07 16:02:23.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-12-07 16:02:23.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.639][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-12-07 16:02:23.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-12-07 16:02:23.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.645][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:23.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:23.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.655][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:23.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:23.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:23.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:23.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:23.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:23.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:23.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:23.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.683][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:23.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:23.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.688][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:23.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:23.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:23.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:23.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.702][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:23.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:23.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.707][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:23.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:23.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.712][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:23.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:23.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:23.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:23.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:23.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:23.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:23.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:23.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.741][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:23.742][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:23.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.745][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:23.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:23.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.761][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:02:23.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:02:23.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.767][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:02:23.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:02:23.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.772][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:02:23.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:02:23.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.777][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:02:23.778][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:02:23.779][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.780][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.782][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:02:23.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:02:23.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.797][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:23.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:23.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.802][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:23.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:23.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.807][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:23.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:23.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.812][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:23.814][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:23.815][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.816][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.817][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:23.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:23.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.832][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:23.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:23.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.837][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:23.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:23.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.842][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:23.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:23.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.847][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:23.849][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:23.850][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.851][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.852][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:23.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:23.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.868][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:23.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:23.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.873][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:23.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:23.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.878][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:23.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:23.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.883][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:23.884][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:23.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.887][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.888][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:23.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:23.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.907][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:23.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:23.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.912][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:23.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:23.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.917][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:23.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:23.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.922][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:23.923][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:23.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.926][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.927][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:23.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:23.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.942][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:23.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:23.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.947][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:23.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:23.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.952][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:23.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:23.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.957][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:23.958][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:23.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.961][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.962][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:23.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:23.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.977][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:23.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:23.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.982][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:23.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:23.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.987][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:23.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:23.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.992][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:23.994][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:23.995][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:23.996][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:23.997][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:23.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:24.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:24.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:24.012][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:02:24.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:24.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:24.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:24.018][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:02:24.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:24.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:24.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:24.022][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:02:24.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:24.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:24.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:24.027][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:02:24.029][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:24.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:24.031][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:24.032][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:02:24.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:24.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:24.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:24.047][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:24.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:24.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:24.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:24.052][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:24.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:24.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:24.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:24.057][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:24.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:24.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:24.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:24.062][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:24.064][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:24.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:24.066][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:24.067][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:24.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:24.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:24.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:24.082][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:24.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:24.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:24.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:24.088][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:24.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:24.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:24.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:24.093][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:24.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:24.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:24.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:24.098][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:24.099][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:24.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:24.106][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:24.107][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:24.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:24.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:24.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:24.122][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:24.123][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:24.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:24.126][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:24.132][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:24.133][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:24.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:24.136][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:24.142][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:24.143][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:24.144][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:24.146][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:24.152][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:24.153][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:24.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:24.156][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:24.162][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:24.163][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:24.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:24.165][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:24.172][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:24.173][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:24.174][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:24.175][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:24.182][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:24.183][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:24.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:24.185][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:24.192][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:24.193][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:24.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:24.195][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:24.202][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:02:24.203][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:24.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:24.205][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:24.212][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:24.213][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:24.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:24.216][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:24.222][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:02:24.224][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:02:24.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:24.226][ef$get] fields variable is a list.
biodb.INFO [2024-12-07 16:02:24.236][biodb::testThat]
biodb.INFO [2024-12-07 16:02:24.238][biodb::testThat] Running test function test.rt.unit (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-12-07 16:02:24.239][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:02:24.240][biodb::testThat]
biodb.DEBUG[2024-12-07 16:02:24.243][private$loadEntries] Creating entries from ids [3]: "15440, 2528, 7799".
biodb.DEBUG[2024-12-07 16:02:24.250][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
biodb.TRACE[2024-12-07 16:02:24.256][cch$loadFileContent] Trying to load 3 files from cache: [3]: "15440, 2528, 7799".
biodb.TRACE[2024-12-07 16:02:24.258][cch$loadFileContent] file.exist = [3]: "FALSE, TRUE, TRUE".
biodb.TRACE[2024-12-07 16:02:24.261][loadFileContents] Loaded 2 files from cache: [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2528.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7799.xml".
biodb.DEBUG[2024-12-07 16:02:24.262][conn$getEntryContent] 2 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:02:24.264][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:02:24.265][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:02:24.266][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:02:24.272][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:24.273][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:24.274][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:24.281][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:24.282][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:24.283][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:24.284][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:24.286][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
biodb.DEBUG[2024-12-07 16:02:24.315][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:02:24.317][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:02:24.324][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
biodb.TRACE[2024-12-07 16:02:25.012][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440).
biodb.DEBUG[2024-12-07 16:02:25.549][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:02:25.551][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5c6fb88c946e8568cc03c0d73dc5603e.content"
biodb.TRACE[2024-12-07 16:02:25.625][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5c6fb88c946e8568cc03c0d73dc5603e.request"
biodb.TRACE[2024-12-07 16:02:25.729][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15440.xml"
biodb.DEBUG[2024-12-07 16:02:25.773][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:02:25.774][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2024-12-07 16:02:25.776][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2024-12-07 16:02:25.778][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:25.779][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:25.780][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:25.795][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:25.800][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:25.801][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:25.802][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:25.805][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:25.806][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:25.807][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:25.808][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:25.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:25.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:25.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:25.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:25.815][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:25.816][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:25.817][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:25.819][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:25.820][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:25.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:25.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:25.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:25.825][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:25.827][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:25.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:25.829][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:25.831][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:25.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:25.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:25.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:25.836][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:25.837][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:25.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:25.840][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:25.841][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:25.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:25.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:25.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:25.846][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:25.848][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:25.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:25.850][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:25.851][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:25.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:25.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:25.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:25.856][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:25.858][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:25.859][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:25.860][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:25.862][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:25.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:25.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:25.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:25.867][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:02:25.868][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:25.869][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:25.870][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:25.872][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:02:25.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:25.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:25.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:25.877][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:25.878][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:25.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:25.881][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:25.882][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:25.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:25.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:25.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:25.887][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:25.889][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:25.890][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:25.891][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:25.893][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:25.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:25.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:25.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:25.898][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:02:25.900][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:25.901][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:25.902][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:25.904][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:02:25.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:25.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:25.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:25.909][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:02:25.910][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:02:25.912][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:25.913][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:25.914][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:02:25.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:02:25.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:25.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:25.919][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:25.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:25.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:25.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:25.924][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:25.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:25.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:25.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:25.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:25.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:25.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:25.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:25.935][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:25.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:25.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:25.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:25.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:25.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:25.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:25.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:25.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:25.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:25.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:25.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:25.950][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:25.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:25.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:25.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:25.959][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:25.960][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:25.961][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:25.967][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:25.968][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:25.969][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:25.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:25.973][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:25.975][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:25.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:25.977][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:25.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:25.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:25.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:25.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:25.984][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:25.985][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:25.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:25.987][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:25.989][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:25.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:25.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:25.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:25.994][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:25.995][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:25.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:25.998][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:25.999][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:26.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:26.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.005][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:26.006][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:26.007][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.008][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.010][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:26.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:26.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.015][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:26.016][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:26.018][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.019][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.020][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:26.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:26.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.025][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:26.027][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:26.028][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.029][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.031][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:26.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:26.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.036][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:02:26.037][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:26.038][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.039][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.041][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:02:26.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:26.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.046][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:26.047][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:26.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.049][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.051][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:26.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:26.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.056][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:26.057][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:26.058][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.060][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.061][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:26.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:26.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.066][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:02:26.068][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:26.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.070][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.072][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:02:26.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:26.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.077][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:02:26.078][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:02:26.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.080][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.082][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:02:26.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:02:26.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.087][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:26.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:26.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.092][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:26.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:26.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:26.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:26.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.102][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:26.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:26.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:26.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:26.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.116][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:26.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:26.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:26.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:26.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:26.126][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:26.127][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:26.128][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:26.134][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:26.135][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:26.136][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:26.137][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:26.140][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:26.141][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:26.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.144][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:26.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:26.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.150][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:26.152][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:26.153][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.154][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.155][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:26.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:26.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.160][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:26.162][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:26.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.164][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.166][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:26.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:26.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.171][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:26.172][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:26.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.174][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.176][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:26.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:26.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.181][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:26.182][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:26.183][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.184][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.186][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:26.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:26.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.191][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:26.192][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:26.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.194][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.196][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:26.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:26.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.201][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:02:26.202][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:26.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.204][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.206][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:02:26.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:26.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.211][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:26.212][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:26.213][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.214][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.216][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:26.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:26.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.223][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:26.224][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:26.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.227][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.229][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:26.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:26.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.235][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:02:26.236][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:26.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.239][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.240][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:02:26.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:26.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.245][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:02:26.247][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:02:26.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.249][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.251][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:02:26.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:02:26.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.256][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:26.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:26.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.261][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:26.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:26.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:26.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:26.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.276][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:26.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:26.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:26.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:26.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:26.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:26.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:26.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:26.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:26.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:26.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.302][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:26.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:26.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.307][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:26.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:26.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.312][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:26.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:26.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.317][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:26.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:26.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:26.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:26.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:26.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:26.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:26.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:26.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:26.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:26.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:26.342][self$createEntryFromContent] Accession numbers: 15440, 2528, 7799.
biodb.TRACE[2024-12-07 16:02:26.343][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-12-07 16:02:26.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-12-07 16:02:26.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.348][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-12-07 16:02:26.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-12-07 16:02:26.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.353][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-12-07 16:02:26.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-12-07 16:02:26.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.364][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-12-07 16:02:26.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-12-07 16:02:26.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.369][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-12-07 16:02:26.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-12-07 16:02:26.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.374][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-12-07 16:02:26.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-12-07 16:02:26.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.384][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-12-07 16:02:26.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-12-07 16:02:26.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.389][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-12-07 16:02:26.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-12-07 16:02:26.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.394][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-12-07 16:02:26.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-12-07 16:02:26.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-12-07 16:02:26.408][biodb::testThat]
biodb.INFO [2024-12-07 16:02:26.410][biodb::testThat] Running test function test.searchForEntries (" We can search for an entry by searchable field ").
biodb.INFO [2024-12-07 16:02:26.411][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:02:26.412][biodb::testThat]
biodb.TRACE[2024-12-07 16:02:26.416][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:26.417][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:26.418][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.419][ef$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:26.421][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
biodb.TRACE[2024-12-07 16:02:26.459][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:26.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:26.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.465][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:26.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:26.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:26.469][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:26.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:26.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:26.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:26.478][function(conn, opt)] With value "squalene".
biodb.DEBUG[2024-12-07 16:02:26.508][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2024-12-07 16:02:26.592][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:02:26.613][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2024-12-07 16:02:26.615][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:02:26.674][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2024-12-07 16:02:26.679][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:02:26.701][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:02:26.702][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:02:26.728][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL%20NAMES&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-12-07 16:02:27.469][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL%20NAMES&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-12-07 16:02:28.131][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:02:28.133][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content"
biodb.TRACE[2024-12-07 16:02:28.180][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.request"
biodb.DEBUG[2024-12-07 16:02:28.183][function(conn, opt)] With found IDs [1]: "15440".
biodb.TRACE[2024-12-07 16:02:28.198][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:28.199][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:28.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:28.202][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:28.203][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:28.204][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:28.205][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:28.206][ef$get] fields variable is a list.
biodb.INFO [2024-12-07 16:02:28.212][biodb::testThat]
biodb.INFO [2024-12-07 16:02:28.213][biodb::testThat] Running test function test.searchByName (" We can search for an entry by name. ").
biodb.INFO [2024-12-07 16:02:28.214][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:02:28.215][biodb::testThat]
biodb.TRACE[2024-12-07 16:02:28.247][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:28.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:28.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:28.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:28.253][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:28.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:28.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:28.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:28.257][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:28.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:28.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:28.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:28.344][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:02:28.349][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:02:28.351][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-12-07 16:02:28.352][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:02:28.354][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.INFO [2024-12-07 16:02:28.375][biodb::testThat]
biodb.INFO [2024-12-07 16:02:28.376][biodb::testThat] Running test function testEntryLoading (" We can load an entry from the database. ").
biodb.INFO [2024-12-07 16:02:28.378][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:02:28.379][biodb::testThat]
biodb.TRACE[2024-12-07 16:02:28.392][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:28.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:28.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:28.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:28.397][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:28.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:28.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:28.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:28.402][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:28.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:28.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:28.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:28.406][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:28.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:28.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:28.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:28.411][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:28.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:28.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:28.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:28.416][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:28.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:28.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:28.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:28.421][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-07 16:02:28.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-07 16:02:28.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:28.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:28.426][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-07 16:02:28.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-07 16:02:28.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:28.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:28.431][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-12-07 16:02:28.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-12-07 16:02:28.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:28.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:28.435][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-12-07 16:02:28.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-12-07 16:02:28.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:28.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:28.452][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:28.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:28.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:28.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:28.476][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:28.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:28.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:28.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:28.481][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:28.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:28.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:28.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:28.485][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:28.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:28.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:28.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:28.490][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:28.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:28.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:28.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:28.495][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:28.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:28.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:28.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:28.500][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-07 16:02:28.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-07 16:02:28.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:28.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:28.505][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-07 16:02:28.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-07 16:02:28.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:28.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:28.510][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-12-07 16:02:28.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-12-07 16:02:28.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:28.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:28.515][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-12-07 16:02:28.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-12-07 16:02:28.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:28.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-12-07 16:02:28.527][biodb::testThat]
biodb.INFO [2024-12-07 16:02:28.528][biodb::testThat] Running test function test.entry.page.url (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-12-07 16:02:28.529][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:02:28.530][biodb::testThat]
biodb.INFO [2024-12-07 16:02:28.542][biodb::testThat]
biodb.INFO [2024-12-07 16:02:28.543][biodb::testThat] Running test function test.entry.image.url (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-12-07 16:02:28.544][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:02:28.546][biodb::testThat]
biodb.INFO [2024-12-07 16:02:28.558][biodb::testThat]
biodb.INFO [2024-12-07 16:02:28.560][biodb::testThat] Running test function test.entry.page.url.download (" The entry page URL can be downloaded. ").
biodb.INFO [2024-12-07 16:02:28.561][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:02:28.562][biodb::testThat]
biodb.DEBUG[2024-12-07 16:02:28.566][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
biodb.DEBUG[2024-12-07 16:02:29.378][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440.
biodb.INFO [2024-12-07 16:02:30.472][biodb::testThat]
biodb.INFO [2024-12-07 16:02:30.473][biodb::testThat] Running test function test.entry.image.url.download (" The entry image URL can be downloaded. ").
biodb.INFO [2024-12-07 16:02:30.475][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:02:30.476][biodb::testThat]
biodb.DEBUG[2024-12-07 16:02:30.959][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/displayImage.do?defaultImage=true&imageIndex=0&chebiId=15440&dimensions=400.
biodb.TRACE[2024-12-07 16:02:31.434][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:31.436][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:31.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:31.438][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:31.439][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:31.441][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:31.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:31.443][ef$get] fields variable is a list.
biodb.INFO [2024-12-07 16:02:31.445][biodb::testThat]
biodb.INFO [2024-12-07 16:02:31.447][biodb::testThat] Running test function test.searchCompound (" We can search for a compound ").
biodb.INFO [2024-12-07 16:02:31.448][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:02:31.449][biodb::testThat]
biodb.TRACE[2024-12-07 16:02:31.463][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:31.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:31.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:31.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:31.478][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:31.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:31.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:31.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:31.484][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:31.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:31.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:31.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:31.583][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:02:31.588][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:02:31.589][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-12-07 16:02:31.591][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:02:31.592][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-12-07 16:02:31.678][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:02:31.682][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:02:31.684][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-12-07 16:02:31.685][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:02:31.687][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.TRACE[2024-12-07 16:02:31.705][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-07 16:02:31.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-07 16:02:31.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:31.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:31.716][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:31.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:31.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:31.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:31.721][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:31.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:31.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:31.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:31.726][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:31.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:31.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:31.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:31.731][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:31.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:31.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:31.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:31.736][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:31.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:31.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:31.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:31.748][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:02:31.753][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:02:31.754][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:02:31.756][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-12-07 16:02:32.183][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-12-07 16:02:32.601][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:02:32.603][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content"
biodb.TRACE[2024-12-07 16:02:32.608][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.request"
biodb.DEBUG[2024-12-07 16:02:32.619][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:32.620][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:32.621][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:32.627][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:32.629][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:32.630][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:32.631][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:32.632][private$loadEntries] Creating entries from ids [1]: "192288".
biodb.DEBUG[2024-12-07 16:02:32.697][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:02:32.699][cch$loadFileContent] Trying to load 1 files from cache: [1]: "192288".
biodb.TRACE[2024-12-07 16:02:32.701][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:02:32.702][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:02:32.704][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:02:32.705][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:02:32.706][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:02:32.708][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:02:32.726][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:32.728][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:32.729][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:32.735][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:32.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:32.737][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:32.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:32.740][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=192288".
biodb.DEBUG[2024-12-07 16:02:32.748][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:02:32.749][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:02:32.751][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=192288".
biodb.TRACE[2024-12-07 16:02:33.198][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=192288).
biodb.DEBUG[2024-12-07 16:02:33.618][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:02:33.621][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7e76f7a384ab933ed01801c92c3eec77.content"
biodb.TRACE[2024-12-07 16:02:33.626][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7e76f7a384ab933ed01801c92c3eec77.request"
biodb.TRACE[2024-12-07 16:02:33.629][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/192288.xml"
biodb.DEBUG[2024-12-07 16:02:33.631][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:02:33.633][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:02:33.634][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:02:33.636][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:33.637][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:33.638][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:33.645][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:33.646][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:33.648][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:33.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:33.651][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:33.653][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:33.654][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:33.655][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:33.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:33.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:33.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:33.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:33.662][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:33.663][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:33.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:33.666][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:33.667][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:33.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:33.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:33.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:33.673][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:33.674][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:33.675][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:33.676][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:33.678][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:33.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:33.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:33.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:33.683][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:33.685][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:33.686][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:33.687][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:33.688][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:33.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:33.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:33.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:33.694][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:33.695][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:33.696][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:33.697][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:33.699][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:33.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:33.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:33.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:33.704][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:33.705][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:33.706][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:33.708][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:33.709][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:02:33.711][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:33.712][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:33.713][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:33.714][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:02:33.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:33.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:33.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:33.720][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:33.721][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:33.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:33.723][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:33.725][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:33.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:33.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:33.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:33.730][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:33.732][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:33.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:33.734][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:33.736][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:33.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:33.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:33.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:33.741][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:02:33.742][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:33.744][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:33.745][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:33.747][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:02:33.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:33.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:33.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:33.754][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:02:33.756][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:02:33.765][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:33.772][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:33.774][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:02:33.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:02:33.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:33.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:33.781][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:33.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:33.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:33.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:33.786][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:33.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:33.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:33.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:33.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:33.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:33.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:33.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:33.802][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:33.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:33.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:33.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:33.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:33.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:33.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:33.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:33.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:33.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:33.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:33.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:33.824][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:33.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:33.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:33.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:33.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:33.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:33.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:33.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:33.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:33.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:33.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:33.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:33.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:33.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:33.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:33.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:33.853][self$createEntryFromContent] Accession numbers: 192288.
biodb.TRACE[2024-12-07 16:02:33.866][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:33.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:33.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:33.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:33.871][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:33.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:33.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:33.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:33.876][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:33.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:33.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:33.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:33.882][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:02:33.886][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:02:33.887][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:02:33.890][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-12-07 16:02:34.311][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-12-07 16:02:34.733][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:02:34.736][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content"
biodb.TRACE[2024-12-07 16:02:34.741][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.request"
biodb.DEBUG[2024-12-07 16:02:34.764][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:34.765][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:34.766][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:34.780][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:34.781][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:34.783][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:34.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:34.785][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:34.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:34.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:34.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:34.790][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:34.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:34.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:34.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:34.795][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:34.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:34.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:34.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:34.800][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:34.802][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:34.803][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:34.809][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:34.810][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:34.812][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:34.813][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:34.814][private$loadEntries] Creating entries from ids [1]: "209892".
biodb.DEBUG[2024-12-07 16:02:34.815][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:02:34.817][cch$loadFileContent] Trying to load 1 files from cache: [1]: "209892".
biodb.TRACE[2024-12-07 16:02:34.819][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:02:34.820][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:02:34.822][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:02:34.823][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:02:34.824][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:02:34.826][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:02:34.829][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:34.830][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:34.831][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:34.838][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:34.839][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:34.840][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:34.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:34.843][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=209892".
biodb.DEBUG[2024-12-07 16:02:34.846][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:02:34.848][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:02:34.849][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=209892".
biodb.TRACE[2024-12-07 16:02:35.523][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=209892).
biodb.DEBUG[2024-12-07 16:02:35.947][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:02:35.950][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7a3362365076d47cdf0955cccdd37bcf.content"
biodb.TRACE[2024-12-07 16:02:35.964][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7a3362365076d47cdf0955cccdd37bcf.request"
biodb.TRACE[2024-12-07 16:02:35.968][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/209892.xml"
biodb.DEBUG[2024-12-07 16:02:35.970][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:02:35.971][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:02:35.972][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:02:35.974][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:35.975][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:35.976][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:35.983][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:35.984][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:35.985][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:35.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:35.989][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:35.990][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:35.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:35.992][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:35.994][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:35.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:35.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:35.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:35.999][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:36.000][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:36.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.002][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.004][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:36.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:36.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.009][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:36.010][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:36.012][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.013][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.014][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:36.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:36.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.019][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:36.021][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:36.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.030][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.032][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:36.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:36.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.037][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:36.038][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:36.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.040][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.042][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:36.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:36.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.047][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:36.048][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:36.049][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.051][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.052][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:02:36.053][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:36.055][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.056][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.057][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:02:36.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:36.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.062][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:36.064][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:36.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.066][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.068][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:36.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:36.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.073][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:36.074][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:36.075][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.076][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.078][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:36.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:36.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.083][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:02:36.084][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:36.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.087][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.088][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:02:36.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:36.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.093][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:02:36.094][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:02:36.096][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.097][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.098][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:02:36.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:02:36.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.103][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:36.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:36.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.108][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:36.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:36.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:36.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:36.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.118][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:36.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:36.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:36.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:36.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:36.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:36.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:36.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:36.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:36.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:36.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:36.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:36.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:36.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:36.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:36.153][self$createEntryFromContent] Accession numbers: 209892.
biodb.TRACE[2024-12-07 16:02:36.155][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:36.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:36.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.159][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:36.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:36.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.169][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:36.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:36.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:36.197][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:02:36.201][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:02:36.203][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-12-07 16:02:36.205][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:02:36.207][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-12-07 16:02:36.210][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:36.212][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:36.213][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:36.219][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:36.220][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:36.221][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:36.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:36.224][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:36.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:36.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.229][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:36.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:36.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.234][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:36.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:36.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:36.239][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:36.240][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:36.241][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:36.247][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:36.249][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:36.250][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:36.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:36.252][private$loadEntries] Creating entries from ids [1]: "26747".
biodb.DEBUG[2024-12-07 16:02:36.253][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:02:36.255][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26747".
biodb.TRACE[2024-12-07 16:02:36.257][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:02:36.258][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:02:36.260][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:02:36.261][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:02:36.262][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:02:36.263][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:02:36.266][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:36.267][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:36.269][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:36.275][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:36.276][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:36.277][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:36.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:36.280][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747".
biodb.DEBUG[2024-12-07 16:02:36.283][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:02:36.284][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:02:36.286][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747".
biodb.TRACE[2024-12-07 16:02:36.720][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747).
biodb.DEBUG[2024-12-07 16:02:37.140][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:02:37.143][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/462a35453014388bd90df1c9e4ade520.content"
biodb.TRACE[2024-12-07 16:02:37.147][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/462a35453014388bd90df1c9e4ade520.request"
biodb.TRACE[2024-12-07 16:02:37.151][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26747.xml"
biodb.DEBUG[2024-12-07 16:02:37.153][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:02:37.154][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:02:37.156][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:02:37.158][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:37.159][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:37.160][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:37.174][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:37.175][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:37.176][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:37.178][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:37.180][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:37.182][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:37.183][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:37.184][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:37.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:37.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:37.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:37.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:37.191][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:37.192][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:37.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:37.194][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:37.196][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:37.197][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:37.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:37.199][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:37.201][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:37.203][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:37.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:37.205][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:37.207][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:37.208][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:37.209][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:37.210][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:37.212][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:37.213][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:37.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:37.215][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:37.217][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:02:37.219][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:37.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:37.221][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:37.223][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:37.224][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:37.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:37.226][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:37.228][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:37.229][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:37.231][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:37.232][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:37.234][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:37.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:37.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:37.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:37.239][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:02:37.240][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:37.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:37.243][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:37.244][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:02:37.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:37.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:37.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:37.249][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:02:37.251][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:02:37.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:37.253][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:37.255][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:37.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:37.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:37.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:37.260][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:37.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:37.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:37.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:37.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:37.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:37.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:37.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:37.270][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:37.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:37.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:37.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:37.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:37.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:37.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:37.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:37.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:37.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:37.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:37.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:37.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:37.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:37.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:37.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:37.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:37.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:37.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:37.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:37.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:37.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:37.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:37.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:37.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:37.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:37.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:37.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:37.307][self$createEntryFromContent] Accession numbers: 26747.
biodb.TRACE[2024-12-07 16:02:37.308][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:37.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:37.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:37.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:37.318][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:37.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:37.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:37.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:37.323][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:37.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:37.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:37.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:37.329][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:37.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:37.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:37.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:37.334][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:37.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:37.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:37.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:37.339][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:37.340][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:37.341][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:37.348][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:37.349][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:37.350][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:37.351][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:37.353][private$loadEntries] Creating entries from ids [1]: "59285".
biodb.DEBUG[2024-12-07 16:02:37.354][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:02:37.356][cch$loadFileContent] Trying to load 1 files from cache: [1]: "59285".
biodb.TRACE[2024-12-07 16:02:37.358][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:02:37.359][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:02:37.361][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:02:37.362][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:02:37.363][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:02:37.364][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:02:37.368][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:37.369][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:37.370][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:37.377][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:37.378][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:37.379][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:37.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:37.382][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285".
biodb.DEBUG[2024-12-07 16:02:37.386][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:02:37.387][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:02:37.389][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285".
biodb.TRACE[2024-12-07 16:02:37.843][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285).
biodb.DEBUG[2024-12-07 16:02:38.260][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:02:38.263][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a390fa120be311b7c431851d8d66d5ac.content"
biodb.TRACE[2024-12-07 16:02:38.267][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a390fa120be311b7c431851d8d66d5ac.request"
biodb.TRACE[2024-12-07 16:02:38.271][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/59285.xml"
biodb.DEBUG[2024-12-07 16:02:38.273][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:02:38.275][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:02:38.276][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:02:38.278][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:38.279][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:38.280][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:38.287][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:38.288][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:38.289][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:38.290][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:38.293][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:38.294][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:38.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:38.297][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:38.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:38.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:38.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:38.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:38.304][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:38.305][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:38.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:38.308][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:38.309][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:38.311][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:38.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:38.313][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:38.315][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:38.316][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:38.317][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:38.318][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:38.320][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:38.321][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:38.322][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:38.324][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:38.325][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:38.326][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:38.328][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:38.336][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:38.338][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:02:38.339][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:38.340][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:38.342][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:38.343][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:38.345][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:38.346][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:38.347][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:38.349][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:38.350][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:38.352][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:38.353][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:38.355][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:38.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:38.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:38.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:38.361][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:02:38.362][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:38.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:38.364][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:38.366][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:02:38.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:38.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:38.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:38.371][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:02:38.373][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:02:38.374][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:38.375][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:38.377][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:38.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:38.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:38.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:38.382][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:38.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:38.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:38.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:38.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:38.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:38.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:38.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:38.393][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:38.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:38.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:38.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:38.398][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:38.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:38.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:38.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:38.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:38.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:38.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:38.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:38.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:38.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:38.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:38.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:38.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:38.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:38.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:38.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:38.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:38.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:38.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:38.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:38.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:38.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:38.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:38.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:38.429][self$createEntryFromContent] Accession numbers: 59285.
biodb.TRACE[2024-12-07 16:02:38.430][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:38.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:38.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:38.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:38.435][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:38.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:38.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:38.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:38.440][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:38.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:38.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:38.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:38.445][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:38.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:38.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:38.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:38.450][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:38.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:38.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:38.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:38.455][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:38.456][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:38.457][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:38.463][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:38.464][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:38.465][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:38.466][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:38.468][private$loadEntries] Creating entries from ids [1]: "75174".
biodb.DEBUG[2024-12-07 16:02:38.469][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:02:38.471][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75174".
biodb.TRACE[2024-12-07 16:02:38.473][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:02:38.474][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:02:38.479][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:02:38.481][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:02:38.482][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:02:38.483][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:02:38.486][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:38.487][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:38.489][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:38.495][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:38.496][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:38.497][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:38.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:38.499][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174".
biodb.DEBUG[2024-12-07 16:02:38.503][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:02:38.504][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:02:38.506][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174".
biodb.TRACE[2024-12-07 16:02:38.941][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174).
biodb.DEBUG[2024-12-07 16:02:39.363][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:02:39.365][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/379ec57940c7734782bc4c07c7e15a9b.content"
biodb.TRACE[2024-12-07 16:02:39.370][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/379ec57940c7734782bc4c07c7e15a9b.request"
biodb.TRACE[2024-12-07 16:02:39.373][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75174.xml"
biodb.DEBUG[2024-12-07 16:02:39.375][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:02:39.376][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:02:39.378][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:02:39.380][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:39.381][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:39.382][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:39.388][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:39.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:39.391][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:39.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:39.395][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:39.396][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:39.397][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.398][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:39.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:39.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.405][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:39.406][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:39.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.409][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.410][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:39.412][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:39.413][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.414][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.416][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:39.417][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:39.419][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.420][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.421][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:39.423][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:39.424][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.425][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.426][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:39.428][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:39.429][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.430][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.432][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:02:39.433][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:39.434][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.436][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.437][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:39.438][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:39.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.441][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.442][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:39.444][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:39.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.446][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.448][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:39.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:39.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.454][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:02:39.455][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:39.456][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.457][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.459][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:02:39.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:39.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.464][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:02:39.465][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:02:39.467][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.468][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.469][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:39.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:39.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.482][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:39.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:39.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:39.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:39.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.492][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:39.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:39.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:39.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:39.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:39.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:39.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:39.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:39.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:39.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:39.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:39.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:39.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:39.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:39.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:39.528][self$createEntryFromContent] Accession numbers: 75174.
biodb.TRACE[2024-12-07 16:02:39.529][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:39.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:39.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.534][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:39.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:39.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.540][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:39.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:39.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.545][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:39.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:39.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.550][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:39.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:39.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:39.555][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:39.556][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:39.557][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:39.563][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:39.564][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:39.566][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:39.567][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:39.568][private$loadEntries] Creating entries from ids [1]: "15441".
biodb.DEBUG[2024-12-07 16:02:39.569][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:02:39.571][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15441".
biodb.TRACE[2024-12-07 16:02:39.573][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:02:39.574][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:02:39.575][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:02:39.577][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:02:39.578][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:02:39.579][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:02:39.583][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:39.584][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:39.585][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:39.591][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:39.592][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:39.593][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:39.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:39.596][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441".
biodb.DEBUG[2024-12-07 16:02:39.600][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:02:39.601][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:02:39.603][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441".
biodb.TRACE[2024-12-07 16:02:40.074][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441).
biodb.DEBUG[2024-12-07 16:02:40.496][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:02:40.499][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6d4f93841bd82da498852b3a0a5692d.content"
biodb.TRACE[2024-12-07 16:02:40.503][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6d4f93841bd82da498852b3a0a5692d.request"
biodb.TRACE[2024-12-07 16:02:40.506][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15441.xml"
biodb.DEBUG[2024-12-07 16:02:40.516][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:02:40.517][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:02:40.519][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:02:40.521][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:40.522][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:40.523][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:40.529][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:40.530][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:40.532][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:40.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:40.535][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:40.537][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:40.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.539][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:40.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:40.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.546][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:40.547][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:40.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.550][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.551][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:40.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:40.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.557][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:40.558][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:40.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.560][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.562][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:40.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:40.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.567][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:40.568][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:40.570][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.571][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.572][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:40.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:40.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.577][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:40.579][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:40.580][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.581][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.583][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:40.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:40.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.588][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:40.589][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:40.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.592][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.593][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:40.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:40.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.598][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:02:40.600][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:40.601][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.602][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.604][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:02:40.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:40.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.609][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:40.610][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:40.611][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.612][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.614][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:40.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:40.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.619][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:40.621][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:40.622][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.623][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.625][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:40.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:40.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.630][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:02:40.632][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:40.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.634][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.636][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:02:40.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:40.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.641][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:02:40.642][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:02:40.643][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.644][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.646][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:02:40.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:02:40.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.651][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:40.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:40.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.660][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:40.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:40.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:40.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:40.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.670][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:40.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:40.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:40.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:40.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:40.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:40.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:40.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:40.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.690][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:40.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:40.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.695][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:40.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:40.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:40.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:40.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:40.705][self$createEntryFromContent] Accession numbers: 15441.
biodb.TRACE[2024-12-07 16:02:40.707][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:40.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:40.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.712][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:40.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:40.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.717][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:40.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:40.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:40.722][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:40.723][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:40.724][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:40.730][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:40.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:40.733][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:40.734][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:40.735][private$loadEntries] Creating entries from ids [1]: "15442".
biodb.DEBUG[2024-12-07 16:02:40.736][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:02:40.738][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15442".
biodb.TRACE[2024-12-07 16:02:40.740][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:02:40.741][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:02:40.743][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:02:40.744][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:02:40.745][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:02:40.746][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:02:40.750][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:40.751][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:40.752][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:40.758][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:40.760][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:40.761][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:40.762][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:40.764][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442".
biodb.DEBUG[2024-12-07 16:02:40.767][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:02:40.769][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:02:40.770][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442".
biodb.TRACE[2024-12-07 16:02:41.240][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442).
biodb.DEBUG[2024-12-07 16:02:41.657][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:02:41.659][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4c2c678eeeeb53d29ca6f3663ebee297.content"
biodb.TRACE[2024-12-07 16:02:41.664][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4c2c678eeeeb53d29ca6f3663ebee297.request"
biodb.TRACE[2024-12-07 16:02:41.667][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15442.xml"
biodb.DEBUG[2024-12-07 16:02:41.669][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:02:41.670][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:02:41.671][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:02:41.673][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:41.674][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:41.676][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:41.689][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:41.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:41.691][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:41.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:41.695][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:41.696][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:41.697][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:41.699][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:41.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:41.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:41.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:41.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:41.705][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:41.707][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:41.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:41.709][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:41.710][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:41.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:41.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:41.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:41.716][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:41.717][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:41.718][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:41.719][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:41.721][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:41.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:41.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:41.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:41.726][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:41.728][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:41.729][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:41.730][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:41.732][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:41.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:41.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:41.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:41.737][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:41.738][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:41.739][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:41.741][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:41.742][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:41.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:41.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:41.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:41.747][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:41.749][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:41.750][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:41.751][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:41.753][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:41.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:41.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:41.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:41.758][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:02:41.759][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:41.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:41.762][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:41.763][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:02:41.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:41.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:41.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:41.768][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:41.770][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:41.771][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:41.772][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:41.774][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:41.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:41.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:41.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:41.779][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:41.780][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:41.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:41.783][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:41.784][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:41.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:41.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:41.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:41.789][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:02:41.791][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:41.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:41.793][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:41.795][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:02:41.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:41.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:41.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:41.800][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:02:41.801][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:02:41.803][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:41.804][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:41.805][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:02:41.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:02:41.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:41.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:41.810][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:41.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:41.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:41.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:41.816][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:41.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:41.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:41.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:41.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:41.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:41.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:41.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:41.831][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:41.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:41.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:41.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:41.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:41.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:41.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:41.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:41.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:41.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:41.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:41.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:41.846][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:41.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:41.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:41.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:41.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:41.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:41.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:41.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:41.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:41.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:41.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:41.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:41.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:41.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:41.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:41.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:41.866][self$createEntryFromContent] Accession numbers: 15442.
biodb.TRACE[2024-12-07 16:02:41.867][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:41.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:41.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:41.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:41.872][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:41.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:41.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:41.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:41.877][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:41.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:41.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:41.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:41.882][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:41.883][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:41.884][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:41.891][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:41.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:41.893][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:41.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:41.896][private$loadEntries] Creating entries from ids [1]: "57310".
biodb.DEBUG[2024-12-07 16:02:41.897][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:02:41.899][cch$loadFileContent] Trying to load 1 files from cache: [1]: "57310".
biodb.TRACE[2024-12-07 16:02:41.900][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:02:41.902][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:02:41.903][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:02:41.904][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:02:41.906][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:02:41.907][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:02:41.910][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:41.911][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:41.912][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:41.919][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:41.920][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:41.921][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:41.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:41.924][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310".
biodb.DEBUG[2024-12-07 16:02:41.927][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:02:41.929][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:02:41.930][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310".
biodb.TRACE[2024-12-07 16:02:42.366][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310).
biodb.DEBUG[2024-12-07 16:02:42.784][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:02:42.786][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e616043f98d9256021d0f5715e02d37b.content"
biodb.TRACE[2024-12-07 16:02:42.791][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e616043f98d9256021d0f5715e02d37b.request"
biodb.TRACE[2024-12-07 16:02:42.794][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/57310.xml"
biodb.DEBUG[2024-12-07 16:02:42.796][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:02:42.797][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:02:42.799][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:02:42.801][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:42.802][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:42.803][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:42.809][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:42.810][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:42.811][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:42.813][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:42.823][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:42.824][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:42.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:42.827][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:42.828][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:42.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:42.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:42.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:42.833][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:42.834][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:42.836][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:42.837][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:42.838][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:42.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:42.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:42.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:42.843][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:42.845][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:42.846][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:42.847][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:42.849][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:42.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:42.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:42.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:42.854][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:42.855][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:42.856][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:42.857][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:42.859][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:42.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:42.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:42.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:42.864][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:42.865][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:42.866][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:42.868][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:42.869][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:42.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:42.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:42.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:42.874][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:42.875][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:42.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:42.878][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:42.879][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:02:42.881][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:42.882][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:42.883][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:42.884][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:02:42.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:42.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:42.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:42.889][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:42.891][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:42.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:42.893][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:42.895][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:42.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:42.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:42.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:42.900][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:42.901][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:42.902][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:42.903][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:42.905][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:42.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:42.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:42.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:42.910][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:02:42.911][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:42.912][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:42.914][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:42.915][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:02:42.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:42.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:42.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:42.920][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:02:42.921][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:02:42.923][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:42.924][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:42.925][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:02:42.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:02:42.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:42.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:42.931][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:42.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:42.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:42.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:42.936][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:42.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:42.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:42.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:42.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:42.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:42.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:42.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:42.946][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:42.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:42.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:42.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:42.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:42.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:42.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:42.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:42.962][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:42.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:42.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:42.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:42.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:42.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:42.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:42.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:42.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:42.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:42.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:42.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:42.977][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:42.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:42.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:42.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:42.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:42.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:42.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:42.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:42.987][self$createEntryFromContent] Accession numbers: 57310.
biodb.TRACE[2024-12-07 16:02:42.988][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:42.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:42.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:42.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:42.993][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:42.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:42.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:42.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:42.998][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:42.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:43.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:43.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:43.003][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:43.004][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:43.005][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:43.011][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:43.012][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:43.013][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:43.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:43.016][private$loadEntries] Creating entries from ids [1]: "66216".
biodb.DEBUG[2024-12-07 16:02:43.017][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:02:43.019][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66216".
biodb.TRACE[2024-12-07 16:02:43.020][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:02:43.021][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:02:43.023][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:02:43.024][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:02:43.025][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:02:43.026][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:02:43.030][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:43.031][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:43.032][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:43.038][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:43.039][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:43.040][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:43.041][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:43.042][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216".
biodb.DEBUG[2024-12-07 16:02:43.046][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:02:43.047][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:02:43.049][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216".
biodb.TRACE[2024-12-07 16:02:43.484][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216).
biodb.DEBUG[2024-12-07 16:02:43.902][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:02:43.904][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a59039263bdeb010b063b31b1dcdd109.content"
biodb.TRACE[2024-12-07 16:02:43.909][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a59039263bdeb010b063b31b1dcdd109.request"
biodb.TRACE[2024-12-07 16:02:43.912][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66216.xml"
biodb.DEBUG[2024-12-07 16:02:43.914][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:02:43.916][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:02:43.917][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:02:43.919][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:43.920][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:43.921][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:43.928][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:43.929][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:43.930][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:43.931][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:43.934][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:43.935][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:43.936][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:43.938][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:43.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:43.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:43.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:43.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:43.944][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:43.945][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:43.954][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:43.955][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:43.957][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:43.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:43.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:43.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:43.962][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:43.963][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:43.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:43.966][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:43.967][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:43.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:43.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:43.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:43.972][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:43.974][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:43.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:43.976][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:43.978][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:43.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:43.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:43.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:43.983][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:43.984][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:43.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:43.986][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:43.988][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:43.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:43.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:43.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:43.993][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:43.994][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:43.995][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:43.997][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:43.998][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:02:43.999][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:44.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.002][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.003][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:02:44.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:44.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.009][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:44.010][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:44.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.012][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.014][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:44.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:44.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.019][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:44.020][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:44.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.023][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.024][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:44.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:44.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.030][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:02:44.031][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:44.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.033][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.035][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:02:44.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:44.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.040][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:02:44.041][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:02:44.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.043][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.045][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:02:44.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:02:44.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.050][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:44.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:44.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.055][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:44.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:44.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:44.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:44.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.065][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:44.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:44.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.070][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:44.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:44.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:44.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:44.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:44.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:44.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:44.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:44.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:44.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:44.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:44.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:44.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:44.112][self$createEntryFromContent] Accession numbers: 66216.
biodb.TRACE[2024-12-07 16:02:44.113][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:44.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:44.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.118][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:44.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:44.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.123][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:44.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:44.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:44.129][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:44.130][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:44.131][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:44.137][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:44.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:44.140][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:44.141][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:44.142][private$loadEntries] Creating entries from ids [1]: "70860".
biodb.DEBUG[2024-12-07 16:02:44.143][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:02:44.145][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70860".
biodb.TRACE[2024-12-07 16:02:44.147][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:02:44.148][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:02:44.150][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:02:44.151][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:02:44.152][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:02:44.153][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:02:44.157][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:44.158][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:44.159][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:44.165][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:44.166][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:44.168][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:44.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:44.170][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70860".
biodb.DEBUG[2024-12-07 16:02:44.174][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:02:44.175][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:02:44.177][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70860".
biodb.TRACE[2024-12-07 16:02:44.611][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70860).
biodb.DEBUG[2024-12-07 16:02:45.027][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:02:45.030][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/02f38adb5262f39c1de7b27972a97d3a.content"
biodb.TRACE[2024-12-07 16:02:45.034][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/02f38adb5262f39c1de7b27972a97d3a.request"
biodb.TRACE[2024-12-07 16:02:45.038][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70860.xml"
biodb.DEBUG[2024-12-07 16:02:45.040][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:02:45.041][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:02:45.043][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:02:45.045][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:45.046][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:45.047][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:45.053][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:45.054][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:45.055][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:45.056][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:45.059][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:45.061][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:45.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:45.063][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:45.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:45.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:45.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:45.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:45.069][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:45.071][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:45.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:45.073][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:45.075][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:45.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:45.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:45.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:45.080][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:45.081][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:45.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:45.083][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:45.085][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:45.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:45.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:45.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:45.098][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:45.100][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:45.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:45.102][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:45.104][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:45.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:45.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:45.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:45.109][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:45.110][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:45.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:45.112][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:45.114][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:45.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:45.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:45.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:45.119][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:45.120][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:45.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:45.123][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:45.124][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:02:45.125][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:45.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:45.128][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:45.129][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:02:45.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:45.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:45.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:45.135][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:45.136][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:45.137][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:45.139][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:45.140][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:45.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:45.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:45.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:45.145][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:45.147][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:45.148][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:45.149][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:45.151][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:45.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:45.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:45.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:45.156][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:02:45.157][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:45.158][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:45.160][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:45.161][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:02:45.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:45.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:45.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:45.166][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:02:45.168][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:02:45.169][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:45.170][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:45.172][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:02:45.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:02:45.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:45.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:45.177][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:45.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:45.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:45.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:45.182][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:45.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:45.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:45.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:45.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:45.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:45.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:45.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:45.193][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:45.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:45.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:45.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:45.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:45.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:45.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:45.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:45.203][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:45.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:45.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:45.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:45.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:45.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:45.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:45.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:45.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:45.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:45.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:45.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:45.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:45.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:45.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:45.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:45.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:45.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:45.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:45.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:45.229][self$createEntryFromContent] Accession numbers: 70860.
biodb.TRACE[2024-12-07 16:02:45.230][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:45.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:45.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:45.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:45.240][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:45.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:45.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:45.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:45.245][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:45.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:45.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:45.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:45.251][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:45.252][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:45.253][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:45.259][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:45.260][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:45.261][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:45.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:45.264][private$loadEntries] Creating entries from ids [1]: "70861".
biodb.DEBUG[2024-12-07 16:02:45.265][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:02:45.267][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70861".
biodb.TRACE[2024-12-07 16:02:45.269][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:02:45.270][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:02:45.271][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:02:45.273][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:02:45.274][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:02:45.275][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:02:45.278][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:45.280][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:45.281][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:45.287][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:45.288][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:45.289][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:45.290][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:45.292][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70861".
biodb.DEBUG[2024-12-07 16:02:45.295][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:02:45.297][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:02:45.298][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70861".
biodb.TRACE[2024-12-07 16:02:45.743][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70861).
biodb.DEBUG[2024-12-07 16:02:46.166][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:02:46.169][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2469ce985de4364ded27031736786fb4.content"
biodb.TRACE[2024-12-07 16:02:46.173][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2469ce985de4364ded27031736786fb4.request"
biodb.TRACE[2024-12-07 16:02:46.177][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70861.xml"
biodb.DEBUG[2024-12-07 16:02:46.179][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:02:46.181][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:02:46.183][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:02:46.185][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:46.186][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:46.187][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:46.194][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:46.195][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:46.196][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:46.197][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:46.200][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:46.201][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:46.202][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:46.204][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:46.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:46.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:46.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:46.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:46.210][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:46.211][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:46.213][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:46.214][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:46.215][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:46.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:46.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:46.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:46.221][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:46.222][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:46.223][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:46.224][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:46.226][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:46.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:46.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:46.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:46.231][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:46.232][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:46.233][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:46.235][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:46.236][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:46.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:46.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:46.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:46.241][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:46.243][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:46.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:46.252][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:46.254][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:46.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:46.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:46.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:46.260][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:46.261][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:46.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:46.263][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:46.265][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:02:46.266][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:46.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:46.268][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:46.270][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:02:46.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:46.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:46.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:46.275][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:46.276][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:46.278][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:46.279][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:46.280][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:46.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:46.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:46.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:46.285][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:46.287][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:46.288][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:46.289][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:46.291][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:46.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:46.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:46.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:46.296][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:02:46.297][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:46.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:46.300][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:46.301][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:02:46.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:46.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:46.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:46.306][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:02:46.308][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:02:46.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:46.310][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:46.312][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:02:46.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:02:46.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:46.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:46.317][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:46.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:46.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:46.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:46.322][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:46.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:46.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:46.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:46.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:46.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:46.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:46.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:46.332][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:46.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:46.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:46.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:46.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:46.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:46.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:46.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:46.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:46.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:46.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:46.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:46.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:46.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:46.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:46.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:46.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:46.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:46.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:46.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:46.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:46.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:46.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:46.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:46.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:46.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:46.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:46.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:46.375][self$createEntryFromContent] Accession numbers: 70861.
biodb.TRACE[2024-12-07 16:02:46.377][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:46.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:46.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:46.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:46.382][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:46.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:46.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:46.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:46.386][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:46.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:46.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:46.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:46.391][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:46.392][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:46.394][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:46.404][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:46.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:46.407][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:46.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:46.410][private$loadEntries] Creating entries from ids [1]: "78662".
biodb.DEBUG[2024-12-07 16:02:46.411][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:02:46.413][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78662".
biodb.TRACE[2024-12-07 16:02:46.415][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:02:46.416][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:02:46.417][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:02:46.419][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:02:46.420][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:02:46.421][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:02:46.424][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:46.425][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:46.426][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:46.433][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:46.434][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:46.435][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:46.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:46.438][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78662".
biodb.DEBUG[2024-12-07 16:02:46.441][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:02:46.443][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:02:46.444][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78662".
biodb.TRACE[2024-12-07 16:02:46.882][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78662).
biodb.DEBUG[2024-12-07 16:02:47.298][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:02:47.301][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2a2164b6127ca54c00efe5984f5864a.content"
biodb.TRACE[2024-12-07 16:02:47.305][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2a2164b6127ca54c00efe5984f5864a.request"
biodb.TRACE[2024-12-07 16:02:47.308][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78662.xml"
biodb.DEBUG[2024-12-07 16:02:47.310][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:02:47.312][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:02:47.313][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:02:47.315][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:47.317][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:47.318][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:47.324][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:47.325][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:47.326][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:47.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:47.330][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:47.331][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:47.333][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.334][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:47.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:47.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.340][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:47.342][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:47.343][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.344][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.346][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:47.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:47.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.351][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:47.352][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:47.353][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.354][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.356][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:47.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:47.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.361][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:47.362][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:47.364][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.365][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.366][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:47.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:47.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.371][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:47.373][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:47.374][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.375][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.377][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:47.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:47.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.382][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:47.383][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:47.384][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.385][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.387][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:02:47.388][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:47.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.391][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.396][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:02:47.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:47.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.405][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:47.406][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:47.407][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.409][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.410][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:47.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:47.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.415][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:47.416][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:47.418][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.419][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.421][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:47.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:47.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.426][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:02:47.427][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:47.428][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.429][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.431][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:02:47.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:47.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.436][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:02:47.437][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:02:47.439][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.440][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.441][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:02:47.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:02:47.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.446][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:47.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:47.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.451][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:47.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:47.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.456][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:47.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:47.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.461][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:47.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:47.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:47.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:47.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:47.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:47.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:47.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:47.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:47.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:47.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:47.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:47.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.492][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:47.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:47.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:47.497][self$createEntryFromContent] Accession numbers: 78662.
biodb.TRACE[2024-12-07 16:02:47.498][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:47.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:47.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.503][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:47.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:47.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.508][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:47.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:47.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:47.513][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:47.514][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:47.515][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:47.521][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:47.522][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:47.523][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:47.525][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:47.526][private$loadEntries] Creating entries from ids [1]: "85084".
biodb.DEBUG[2024-12-07 16:02:47.527][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:02:47.529][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85084".
biodb.TRACE[2024-12-07 16:02:47.531][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:02:47.532][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:02:47.534][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:02:47.535][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:02:47.540][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:02:47.542][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:02:47.545][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:47.546][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:47.547][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:47.554][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:47.555][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:47.556][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:47.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:47.558][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85084".
biodb.DEBUG[2024-12-07 16:02:47.562][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:02:47.563][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:02:47.565][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85084".
biodb.TRACE[2024-12-07 16:02:47.987][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85084).
biodb.DEBUG[2024-12-07 16:02:48.403][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:02:48.406][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62216dc29cd0685dbac0a61545bda088.content"
biodb.TRACE[2024-12-07 16:02:48.410][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62216dc29cd0685dbac0a61545bda088.request"
biodb.TRACE[2024-12-07 16:02:48.414][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85084.xml"
biodb.DEBUG[2024-12-07 16:02:48.416][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:02:48.417][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:02:48.419][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:02:48.421][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:48.422][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:48.423][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:48.429][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:48.431][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:48.432][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:48.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:48.436][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:48.437][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:48.438][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.439][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.441][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:48.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:48.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.446][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:48.447][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:48.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.450][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.451][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:48.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:48.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.456][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:48.458][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:48.459][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.460][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.462][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:48.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:48.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.467][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:48.468][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:48.469][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.471][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.472][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:48.474][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:48.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.476][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.477][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:48.479][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:48.480][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.481][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.483][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:02:48.484][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:48.486][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.487][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.488][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:02:48.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:48.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.494][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:48.495][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:48.496][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.498][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.499][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:48.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:48.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.504][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:48.506][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:48.507][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.508][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.510][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:48.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:48.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.523][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:02:48.524][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:48.526][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.527][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.529][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:02:48.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:48.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.534][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:02:48.535][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:02:48.536][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.537][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.539][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:48.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:48.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.544][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:48.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:48.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.549][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:48.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:48.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.554][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:48.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:48.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:48.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:48.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:48.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:48.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:48.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:48.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:48.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:48.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:48.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:48.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.585][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:48.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:48.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:48.591][self$createEntryFromContent] Accession numbers: 85084.
biodb.TRACE[2024-12-07 16:02:48.592][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:48.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:48.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.597][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:48.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:48.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.602][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:48.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:48.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:48.608][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:48.609][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:48.610][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:48.616][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:48.617][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:48.619][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:48.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:48.621][private$loadEntries] Creating entries from ids [1]: "85086".
biodb.DEBUG[2024-12-07 16:02:48.622][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:02:48.624][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85086".
biodb.TRACE[2024-12-07 16:02:48.626][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:02:48.627][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:02:48.629][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:02:48.630][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:02:48.631][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:02:48.632][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:02:48.636][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:48.637][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:48.638][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:48.644][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:48.645][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:48.646][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:48.648][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:48.649][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85086".
biodb.DEBUG[2024-12-07 16:02:48.653][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:02:48.654][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:02:48.656][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85086".
biodb.TRACE[2024-12-07 16:02:49.082][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85086).
biodb.DEBUG[2024-12-07 16:02:49.500][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:02:49.507][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf3472363c4a7effe355d93315025f8b.content"
biodb.TRACE[2024-12-07 16:02:49.515][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf3472363c4a7effe355d93315025f8b.request"
biodb.TRACE[2024-12-07 16:02:49.518][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85086.xml"
biodb.DEBUG[2024-12-07 16:02:49.520][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:02:49.522][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:02:49.523][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:02:49.525][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:49.526][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:49.527][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:49.534][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:49.535][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:49.536][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:49.537][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:49.540][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:49.541][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:49.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:49.544][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:49.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:49.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:49.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:49.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:49.550][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:49.551][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:49.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:49.554][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:49.555][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:49.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:49.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:49.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:49.561][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:49.562][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:49.563][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:49.564][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:49.566][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:49.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:49.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:49.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:49.571][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:49.572][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:49.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:49.575][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:49.576][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:49.577][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:49.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:49.580][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:49.581][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:49.583][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:49.584][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:49.585][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:49.587][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:02:49.588][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:49.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:49.590][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:49.592][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:02:49.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:49.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:49.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:49.597][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:49.598][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:49.599][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:49.601][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:49.602][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:49.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:49.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:49.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:49.607][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:49.609][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:49.610][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:49.611][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:49.613][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:49.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:49.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:49.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:49.618][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:02:49.619][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:49.620][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:49.621][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:49.623][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:02:49.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:49.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:49.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:49.628][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:02:49.629][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:02:49.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:49.632][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:49.633][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:49.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:49.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:49.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:49.638][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:49.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:49.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:49.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:49.643][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:49.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:49.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:49.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:49.653][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:49.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:49.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:49.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:49.659][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:49.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:49.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:49.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:49.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:49.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:49.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:49.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:49.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:49.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:49.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:49.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:49.674][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:49.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:49.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:49.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:49.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:49.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:49.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:49.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:49.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:49.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:49.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:49.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:49.689][self$createEntryFromContent] Accession numbers: 85086.
biodb.TRACE[2024-12-07 16:02:49.690][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:49.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:49.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:49.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:49.695][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:49.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:49.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:49.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:49.700][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:49.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:49.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:49.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:49.705][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:49.706][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:49.707][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:49.713][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:49.715][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:49.716][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:49.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:49.718][private$loadEntries] Creating entries from ids [1]: "88123".
biodb.DEBUG[2024-12-07 16:02:49.719][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:02:49.721][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88123".
biodb.TRACE[2024-12-07 16:02:49.723][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:02:49.724][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:02:49.725][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:02:49.727][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:02:49.728][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:02:49.729][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:02:49.732][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:49.734][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:49.735][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:49.741][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:49.742][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:49.743][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:49.744][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:49.746][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88123".
biodb.DEBUG[2024-12-07 16:02:49.749][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:02:49.750][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:02:49.752][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88123".
biodb.TRACE[2024-12-07 16:02:50.186][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88123).
biodb.DEBUG[2024-12-07 16:02:50.605][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:02:50.607][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e37f256f660b350650d4ca45d7cd291.content"
biodb.TRACE[2024-12-07 16:02:50.611][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e37f256f660b350650d4ca45d7cd291.request"
biodb.TRACE[2024-12-07 16:02:50.615][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88123.xml"
biodb.DEBUG[2024-12-07 16:02:50.617][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:02:50.618][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:02:50.619][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:02:50.621][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:50.622][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:50.624][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:50.630][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:50.631][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:50.632][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:50.633][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:50.636][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:50.637][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:50.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:50.647][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:50.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:50.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:50.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:50.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:50.654][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:50.655][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:50.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:50.658][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:50.659][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:50.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:50.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:50.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:50.664][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:50.666][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:50.667][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:50.668][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:50.670][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:50.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:50.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:50.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:50.675][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:50.676][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:50.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:50.678][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:50.680][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:50.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:50.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:50.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:50.685][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:50.686][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:50.687][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:50.689][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:50.690][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:50.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:50.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:50.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:50.695][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:50.696][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:50.698][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:50.699][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:50.700][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:02:50.702][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:50.703][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:50.704][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:50.705][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:02:50.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:50.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:50.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:50.711][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:50.712][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:50.713][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:50.714][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:50.716][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:50.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:50.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:50.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:50.721][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:50.722][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:50.723][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:50.724][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:50.726][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:50.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:50.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:50.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:50.731][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:02:50.732][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:50.734][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:50.735][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:50.736][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:02:50.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:50.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:50.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:50.741][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:02:50.743][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:02:50.744][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:50.745][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:50.746][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:02:50.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:02:50.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:50.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:50.751][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:50.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:50.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:50.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:50.756][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:50.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:50.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:50.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:50.761][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:50.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:50.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:50.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:50.766][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:50.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:50.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:50.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:50.771][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:50.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:50.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:50.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:50.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:50.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:50.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:50.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:50.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:50.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:50.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:50.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:50.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:50.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:50.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:50.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:50.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:50.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:50.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:50.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:50.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:50.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:50.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:50.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:50.806][self$createEntryFromContent] Accession numbers: 88123.
biodb.TRACE[2024-12-07 16:02:50.807][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:50.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:50.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:50.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:50.812][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:50.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:50.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:50.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:50.817][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:50.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:50.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:50.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:50.822][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:50.823][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:50.824][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:50.831][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:50.832][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:50.833][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:50.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:50.835][private$loadEntries] Creating entries from ids [1]: "134117".
biodb.DEBUG[2024-12-07 16:02:50.837][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:02:50.839][cch$loadFileContent] Trying to load 1 files from cache: [1]: "134117".
biodb.TRACE[2024-12-07 16:02:50.840][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:02:50.841][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:02:50.843][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:02:50.844][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:02:50.845][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:02:50.847][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:02:50.850][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:50.851][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:50.852][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:50.858][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:50.860][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:50.861][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:50.862][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:50.863][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=134117".
biodb.DEBUG[2024-12-07 16:02:50.867][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:02:50.868][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:02:50.870][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=134117".
biodb.TRACE[2024-12-07 16:02:51.312][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=134117).
biodb.DEBUG[2024-12-07 16:02:51.734][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:02:51.737][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8f998f0023bf19b8745b926f0b2992d7.content"
biodb.TRACE[2024-12-07 16:02:51.741][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8f998f0023bf19b8745b926f0b2992d7.request"
biodb.TRACE[2024-12-07 16:02:51.786][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/134117.xml"
biodb.DEBUG[2024-12-07 16:02:51.788][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:02:51.790][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:02:51.791][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:02:51.793][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:51.794][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:51.795][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:51.802][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:51.804][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:51.805][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:51.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:51.808][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:51.810][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:51.811][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.812][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:51.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:51.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.819][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:51.821][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:51.822][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.823][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.825][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:51.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:51.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.838][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:51.839][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:51.841][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.842][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.843][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:51.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:51.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.848][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:51.850][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:51.851][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.852][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.854][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:51.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:51.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.859][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:51.860][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:51.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.863][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.864][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:51.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:51.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.869][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:51.871][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:51.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.873][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.875][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:02:51.876][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:51.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.878][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.880][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:02:51.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:51.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.885][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:51.886][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:51.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.889][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.890][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:51.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:51.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.896][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:51.897][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:51.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.899][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.901][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:51.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:51.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.906][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:02:51.907][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:51.908][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.910][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.911][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:02:51.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:51.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.916][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:02:51.918][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:02:51.919][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.920][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.921][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:02:51.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:02:51.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.927][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:51.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:51.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.931][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:51.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:51.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:51.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:51.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.941][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:51.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:51.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.946][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:51.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:51.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:51.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:51.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:51.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:51.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.962][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:51.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:51.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:51.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:51.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.977][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:51.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:51.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:51.982][self$createEntryFromContent] Accession numbers: 134117.
biodb.TRACE[2024-12-07 16:02:51.983][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:51.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:51.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.988][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:51.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:51.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.993][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:51.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:51.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:51.998][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:51.999][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:52.000][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:52.006][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:52.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:52.009][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:52.010][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:52.011][private$loadEntries] Creating entries from ids [1]: "138307".
biodb.DEBUG[2024-12-07 16:02:52.013][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:02:52.015][cch$loadFileContent] Trying to load 1 files from cache: [1]: "138307".
biodb.TRACE[2024-12-07 16:02:52.016][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:02:52.018][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:02:52.019][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:02:52.020][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:02:52.021][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:02:52.023][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:02:52.026][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:52.027][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:52.028][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:52.034][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:52.036][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:52.037][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:52.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:52.039][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=138307".
biodb.DEBUG[2024-12-07 16:02:52.043][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:02:52.044][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:02:52.046][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=138307".
biodb.TRACE[2024-12-07 16:02:52.476][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=138307).
biodb.DEBUG[2024-12-07 16:02:52.894][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:02:52.897][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a2610bdf009c6327ccf7d519fff16ded.content"
biodb.TRACE[2024-12-07 16:02:52.902][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a2610bdf009c6327ccf7d519fff16ded.request"
biodb.TRACE[2024-12-07 16:02:52.905][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/138307.xml"
biodb.DEBUG[2024-12-07 16:02:52.908][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:02:52.909][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:02:52.911][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:02:52.913][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:52.914][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:52.915][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:52.922][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:52.923][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:52.924][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:52.925][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:52.928][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:52.929][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:52.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:52.932][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:52.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:52.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:52.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:52.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:52.938][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:52.940][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:52.941][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:52.942][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:52.944][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:52.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:52.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:52.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:52.949][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:52.950][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:52.951][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:52.952][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:52.954][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:52.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:52.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:52.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:52.967][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:52.968][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:52.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:52.971][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:52.973][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:52.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:52.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:52.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:52.978][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:52.979][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:52.980][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:52.981][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:52.983][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:52.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:52.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:52.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:52.988][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:52.989][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:52.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:52.992][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:52.993][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:02:52.994][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:52.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:52.997][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:52.998][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:02:53.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:53.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:53.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:53.003][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:53.005][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:53.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:53.007][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:53.009][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:53.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:53.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:53.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:53.014][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:53.015][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:53.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:53.017][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:53.019][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:53.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:53.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:53.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:53.024][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:02:53.026][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:53.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:53.028][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:53.029][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:02:53.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:53.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:53.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:53.035][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:02:53.036][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:02:53.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:53.038][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:53.040][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:02:53.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:02:53.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:53.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:53.045][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:53.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:53.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:53.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:53.050][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:53.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:53.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:53.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:53.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:53.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:53.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:53.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:53.060][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:53.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:53.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:53.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:53.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:53.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:53.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:53.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:53.070][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:53.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:53.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:53.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:53.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:53.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:53.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:53.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:53.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:53.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:53.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:53.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:53.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:53.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:53.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:53.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:53.090][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:53.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:53.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:53.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:53.095][self$createEntryFromContent] Accession numbers: 138307.
biodb.TRACE[2024-12-07 16:02:53.096][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:53.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:53.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:53.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:53.105][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:53.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:53.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:53.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:53.111][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:53.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:53.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:53.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:53.115][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:53.116][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:53.118][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:53.124][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:53.125][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:53.126][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:53.127][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:53.128][private$loadEntries] Creating entries from ids [1]: "176803".
biodb.DEBUG[2024-12-07 16:02:53.129][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:02:53.131][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176803".
biodb.TRACE[2024-12-07 16:02:53.133][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:02:53.134][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:02:53.135][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:02:53.137][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:02:53.138][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:02:53.139][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:02:53.142][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:53.143][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:53.144][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:53.151][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:53.152][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:53.153][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:53.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:53.155][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176803".
biodb.DEBUG[2024-12-07 16:02:53.159][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:02:53.160][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:02:53.162][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176803".
biodb.TRACE[2024-12-07 16:02:53.594][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176803).
biodb.DEBUG[2024-12-07 16:02:54.009][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:02:54.012][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/648921bf283f148f1437569ccee0fc41.content"
biodb.TRACE[2024-12-07 16:02:54.016][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/648921bf283f148f1437569ccee0fc41.request"
biodb.TRACE[2024-12-07 16:02:54.020][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176803.xml"
biodb.DEBUG[2024-12-07 16:02:54.022][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:02:54.023][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:02:54.025][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:02:54.027][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:54.028][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:54.029][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:54.035][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:54.036][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:54.038][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:54.039][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:54.041][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:54.043][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:54.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.045][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.047][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:54.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:54.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.052][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:54.053][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:54.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.055][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.057][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:54.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:54.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.062][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:54.063][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:54.064][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.066][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.067][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:54.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:54.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.072][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:54.074][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:54.075][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.076][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.078][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:54.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:54.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.083][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:54.092][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:54.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.095][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.096][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:54.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:54.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.101][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:54.103][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:54.104][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.105][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.107][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:02:54.108][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:54.109][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.110][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.112][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:02:54.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:54.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.117][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:54.118][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:54.119][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.120][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.122][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:54.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:54.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.127][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:54.128][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:54.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.131][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.133][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:54.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:54.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.138][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:02:54.139][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:54.140][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.141][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.143][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:02:54.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:54.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.148][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:02:54.150][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:02:54.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.152][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.153][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:02:54.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:02:54.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.159][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:54.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:54.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.164][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:54.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:54.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:54.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:54.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.174][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:54.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:54.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:54.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:54.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.184][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:54.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:54.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:54.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:54.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:54.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:54.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:54.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:54.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:54.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:54.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:54.209][self$createEntryFromContent] Accession numbers: 176803.
biodb.TRACE[2024-12-07 16:02:54.210][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:54.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:54.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.215][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:54.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:54.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.220][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:54.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:54.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:54.229][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:54.230][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:54.232][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:54.238][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:54.239][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:54.240][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:54.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:54.243][private$loadEntries] Creating entries from ids [1]: "176962".
biodb.DEBUG[2024-12-07 16:02:54.244][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:02:54.246][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176962".
biodb.TRACE[2024-12-07 16:02:54.248][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:02:54.249][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:02:54.250][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:02:54.251][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:02:54.253][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:02:54.254][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:02:54.257][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:54.258][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:54.259][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:54.266][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:54.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:54.268][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:54.269][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:54.270][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176962".
biodb.DEBUG[2024-12-07 16:02:54.274][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:02:54.275][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:02:54.277][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176962".
biodb.TRACE[2024-12-07 16:02:54.714][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176962).
biodb.DEBUG[2024-12-07 16:02:55.131][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:02:55.134][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/881a0b9df4a64ff0258c2dc68959eb26.content"
biodb.TRACE[2024-12-07 16:02:55.138][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/881a0b9df4a64ff0258c2dc68959eb26.request"
biodb.TRACE[2024-12-07 16:02:55.141][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176962.xml"
biodb.DEBUG[2024-12-07 16:02:55.143][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:02:55.145][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:02:55.146][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:02:55.148][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:55.149][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:55.150][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:55.156][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:55.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:55.159][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:55.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:55.162][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:55.164][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:55.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.166][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:55.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:55.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.174][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:55.175][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:55.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.178][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.180][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:55.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:55.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.186][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:55.187][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:55.188][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.190][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.191][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:55.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:55.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.196][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:55.198][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:55.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.200][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.202][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:55.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:55.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.207][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:55.209][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:55.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.211][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.212][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:55.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:55.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.217][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:55.219][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:55.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.229][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.231][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:02:55.232][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:55.233][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.234][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.236][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:02:55.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:55.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.241][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:55.242][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:55.243][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.245][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.247][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:55.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:55.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.252][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:55.253][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:55.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.256][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.257][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:55.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:55.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.262][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:02:55.264][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:55.265][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.266][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.268][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:02:55.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:55.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.273][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:02:55.274][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:02:55.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.277][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.278][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:02:55.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:02:55.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.284][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:55.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:55.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.289][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:55.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:55.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:55.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:55.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.299][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:55.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:55.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.304][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:55.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:55.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.309][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:55.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:55.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.314][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:55.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:55.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:55.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:55.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:55.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:55.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:55.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:55.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:55.335][self$createEntryFromContent] Accession numbers: 176962.
biodb.TRACE[2024-12-07 16:02:55.337][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:55.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:55.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.342][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:55.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:55.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.347][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:55.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:55.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:55.353][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:55.354][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:55.355][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:55.361][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:55.363][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:55.364][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:55.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:55.371][private$loadEntries] Creating entries from ids [1]: "198655".
biodb.DEBUG[2024-12-07 16:02:55.372][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:02:55.374][cch$loadFileContent] Trying to load 1 files from cache: [1]: "198655".
biodb.TRACE[2024-12-07 16:02:55.376][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:02:55.377][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:02:55.379][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:02:55.380][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:02:55.381][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:02:55.382][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:02:55.386][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:55.387][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:55.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:55.394][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:55.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:55.397][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:55.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:55.399][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=198655".
biodb.DEBUG[2024-12-07 16:02:55.403][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:02:55.404][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:02:55.406][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=198655".
biodb.TRACE[2024-12-07 16:02:55.848][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=198655).
biodb.DEBUG[2024-12-07 16:02:56.268][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:02:56.271][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2e175d021d3c86c1362fa584a90fbad.content"
biodb.TRACE[2024-12-07 16:02:56.275][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2e175d021d3c86c1362fa584a90fbad.request"
biodb.TRACE[2024-12-07 16:02:56.279][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/198655.xml"
biodb.DEBUG[2024-12-07 16:02:56.281][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:02:56.282][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:02:56.283][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:02:56.285][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:56.287][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:56.288][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:56.294][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:56.295][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:56.296][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:56.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:56.300][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.301][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.303][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.304][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.311][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:56.312][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:56.313][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.314][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.316][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:56.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:56.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.321][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:56.322][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:56.324][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.325][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.326][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:56.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:56.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.332][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:56.333][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:56.334][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.335][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.337][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:56.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:56.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.342][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:56.343][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:56.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.346][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.347][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:56.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:56.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.353][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:56.354][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:56.355][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.356][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.358][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:02:56.359][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:56.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.362][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.363][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:02:56.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:56.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.377][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:56.378][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:56.379][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.381][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.382][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:56.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:56.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.387][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:56.389][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:56.390][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.391][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.393][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:56.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:56.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.398][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:02:56.399][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:56.400][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.402][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.403][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:02:56.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:56.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.408][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:02:56.410][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:02:56.411][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.412][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.414][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:02:56.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:02:56.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.419][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:56.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:56.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.424][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:56.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:56.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.434][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:56.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:56.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.449][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:56.469][self$createEntryFromContent] Accession numbers: 198655.
biodb.TRACE[2024-12-07 16:02:56.471][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:56.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:56.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.476][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:56.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:56.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.481][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:56.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:56.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:56.486][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:56.487][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:56.488][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:56.494][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:56.495][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:56.496][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:56.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:56.499][private$loadEntries] Creating entries from ids [1]: "215045".
biodb.DEBUG[2024-12-07 16:02:56.500][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:02:56.502][cch$loadFileContent] Trying to load 1 files from cache: [1]: "215045".
biodb.TRACE[2024-12-07 16:02:56.504][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:02:56.505][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:02:56.506][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:02:56.641][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:02:56.642][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:02:56.643][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:02:56.647][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:56.648][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:56.649][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:56.655][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:56.656][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:56.657][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:56.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:56.660][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=215045".
biodb.DEBUG[2024-12-07 16:02:56.663][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:02:56.665][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:02:56.666][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=215045".
biodb.TRACE[2024-12-07 16:02:57.127][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=215045).
biodb.DEBUG[2024-12-07 16:02:57.551][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:02:57.553][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5fb598055294db64f197c61a6e36b01a.content"
biodb.TRACE[2024-12-07 16:02:57.558][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5fb598055294db64f197c61a6e36b01a.request"
biodb.TRACE[2024-12-07 16:02:57.561][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/215045.xml"
biodb.DEBUG[2024-12-07 16:02:57.563][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:02:57.565][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:02:57.566][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:02:57.568][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:57.569][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:57.570][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:57.577][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:57.578][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:57.579][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:57.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:57.583][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:57.584][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:57.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.587][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:57.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:57.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.593][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:57.594][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:57.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.597][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.598][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:02:57.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:02:57.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.603][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:57.605][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:57.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.607][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.609][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:02:57.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:02:57.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.614][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:57.615][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:57.616][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.617][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.619][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:02:57.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:02:57.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.624][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:57.625][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:57.626][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.627][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.629][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:02:57.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:02:57.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.634][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:57.635][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:02:57.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.637][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.639][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:02:57.640][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:57.641][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.643][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.644][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:02:57.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:57.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.649][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:57.650][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:57.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.653][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.654][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:57.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:57.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.659][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:57.661][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:57.662][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.663][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.665][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:57.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:57.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.670][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:02:57.671][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:57.673][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.674][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.675][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:02:57.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:02:57.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.680][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:02:57.682][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:02:57.683][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.685][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.686][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:02:57.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:02:57.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.692][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:57.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:57.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.698][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:57.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:57.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:57.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:57.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.710][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:02:57.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:02:57.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:57.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:57.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.722][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:57.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:57.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:57.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:57.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:57.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:57.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.740][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:57.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:57.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:57.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:57.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:57.752][self$createEntryFromContent] Accession numbers: 215045.
biodb.TRACE[2024-12-07 16:02:57.754][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:57.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:57.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.760][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:57.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:57.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:57.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:57.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:57.803][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:02:57.808][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:02:57.810][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-12-07 16:02:57.812][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:02:57.814][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-12-07 16:02:57.818][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:57.820][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:57.821][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:57.829][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:57.830][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:57.832][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:57.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:57.835][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:57.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:57.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.841][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:57.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:57.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.847][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:57.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:57.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:57.853][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:57.854][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:57.856][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:57.863][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:57.864][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:57.866][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:57.867][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:57.868][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:57.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:57.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.874][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:57.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:57.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.881][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:57.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:57.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.887][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:57.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:57.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.893][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:57.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:57.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:57.899][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:57.900][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:57.902][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:57.909][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:57.911][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:57.912][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:57.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:57.915][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:57.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:57.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.921][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:57.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:57.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.927][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:57.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:57.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.933][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:57.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:57.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.939][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:57.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:57.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:57.945][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:57.947][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:57.948][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:57.955][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:57.957][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:57.958][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:57.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:57.961][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:57.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:57.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.967][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:57.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:57.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.974][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:57.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:57.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.980][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:57.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:57.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.986][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:57.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:57.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:57.992][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:57.993][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:57.995][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:58.002][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:58.003][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:58.005][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:58.006][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:58.008][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:58.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:58.014][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:58.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:58.020][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:58.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:58.032][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:58.033][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:58.034][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:58.040][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:58.042][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:58.043][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:58.044][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:58.045][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:58.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:58.050][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:58.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:58.055][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:58.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:58.060][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:58.061][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:58.062][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:58.068][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:58.069][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:58.070][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:58.072][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:58.073][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:58.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:58.078][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:58.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:58.083][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:58.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:58.088][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:58.089][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:58.090][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:58.096][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:58.097][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:58.098][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:58.100][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:58.101][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:58.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:58.106][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:58.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:58.111][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:58.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:58.116][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:58.117][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:58.118][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:58.124][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:58.125][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:58.126][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:58.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:58.129][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:58.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:58.134][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:58.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:58.139][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:58.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:58.144][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:58.145][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:58.146][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:58.152][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:58.153][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:58.154][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:58.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:58.157][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:58.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:58.162][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:58.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:58.167][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:58.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:58.172][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:58.173][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:58.174][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:58.180][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:58.182][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:58.183][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:58.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:58.185][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:58.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:58.190][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:58.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:58.196][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:58.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:58.201][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:58.202][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:58.203][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:58.209][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:58.210][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:58.212][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:58.213][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:58.214][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:58.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:58.219][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:58.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:58.224][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:58.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:58.229][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:58.230][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:58.232][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:58.238][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:58.239][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:58.240][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:58.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:58.243][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:58.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:58.248][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:58.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:58.253][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:58.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:58.258][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:58.259][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:58.260][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:58.267][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:58.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:58.269][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:58.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:58.271][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:58.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:58.276][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:58.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:58.282][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:58.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:58.287][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:58.288][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:58.289][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:58.295][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:58.296][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:58.297][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:58.298][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:58.300][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:58.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:58.305][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:58.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:58.310][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:58.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:58.315][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:58.316][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:58.317][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:58.323][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:58.325][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:58.326][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:58.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:58.328][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:58.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:58.334][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:58.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:58.339][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:58.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:58.344][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:58.345][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:58.346][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:58.352][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:58.353][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:58.354][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:58.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:58.357][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:58.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:58.362][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:58.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:58.367][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:58.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:58.372][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:58.373][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:58.374][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:58.380][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:58.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:58.383][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:58.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:58.385][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:58.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:58.390][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:58.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:58.395][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:58.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:58.400][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:58.401][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:58.402][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:58.408][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:58.410][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:58.411][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:58.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:58.413][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:58.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:58.418][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:58.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:58.423][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:58.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:58.428][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:58.429][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:58.430][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:58.437][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:58.438][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:58.439][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:58.440][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:58.441][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:58.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:58.446][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:58.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:58.451][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:02:58.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:58.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:58.479][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:58.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:58.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:58.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:58.484][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:58.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:58.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:58.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:58.489][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:58.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:58.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:58.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:58.494][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:58.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:58.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:58.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:58.499][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:58.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:02:58.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:58.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:58.537][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:02:58.541][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:02:58.542][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:02:58.545][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-12-07 16:02:58.963][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-12-07 16:02:59.378][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:02:59.381][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c5171beada848a87ef2ffa10427d9be3.content"
biodb.TRACE[2024-12-07 16:02:59.386][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c5171beada848a87ef2ffa10427d9be3.request"
biodb.DEBUG[2024-12-07 16:02:59.390][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:02:59.394][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:02:59.395][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:02:59.397][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-12-07 16:02:59.818][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-12-07 16:03:00.236][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:03:00.238][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/750e63ff76a843f016511fa71c89113e.content"
biodb.TRACE[2024-12-07 16:03:00.243][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/750e63ff76a843f016511fa71c89113e.request"
biodb.DEBUG[2024-12-07 16:03:00.247][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:00.248][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:00.249][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:00.255][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:00.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:00.257][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:00.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:00.260][private$loadEntries] Creating entries from ids [1]: "4648".
biodb.DEBUG[2024-12-07 16:03:00.261][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:03:00.263][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4648".
biodb.TRACE[2024-12-07 16:03:00.265][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:03:00.266][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:03:00.267][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:03:00.269][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:03:00.270][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:03:00.271][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:03:00.274][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:00.275][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:00.276][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:00.283][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:00.284][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:00.285][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:00.286][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:00.288][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4648".
biodb.DEBUG[2024-12-07 16:03:00.291][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:03:00.292][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:03:00.294][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4648".
biodb.TRACE[2024-12-07 16:03:00.743][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4648).
biodb.DEBUG[2024-12-07 16:03:01.162][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:03:01.165][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/844829d8afb6d338ebac906e62f6cb8e.content"
biodb.TRACE[2024-12-07 16:03:01.170][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/844829d8afb6d338ebac906e62f6cb8e.request"
biodb.TRACE[2024-12-07 16:03:01.173][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4648.xml"
biodb.DEBUG[2024-12-07 16:03:01.176][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:03:01.177][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:03:01.179][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:03:01.181][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:01.182][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:01.183][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:01.190][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:01.191][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:01.192][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:01.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:01.196][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:01.198][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:01.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:01.200][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:01.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:01.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:01.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:01.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:01.206][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:03:01.208][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:03:01.209][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:01.210][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:01.212][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:03:01.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:03:01.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:01.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:01.217][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:01.218][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:01.219][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:01.221][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:01.222][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:01.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:01.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:01.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:01.227][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:01.229][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:01.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:01.231][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:01.233][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:01.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:01.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:01.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:01.238][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:01.239][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:01.240][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:01.242][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:01.243][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:01.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:01.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:01.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:01.248][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:01.249][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:01.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:01.252][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:01.253][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:01.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:01.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:01.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:01.258][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:03:01.260][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:01.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:01.262][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:01.264][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:03:01.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:01.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:01.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:01.269][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:01.270][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:01.271][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:01.273][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:01.274][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:01.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:01.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:01.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:01.279][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:01.281][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:01.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:01.283][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:01.285][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:01.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:01.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:01.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:01.290][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:03:01.291][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:03:01.292][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:01.294][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:01.295][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:03:01.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:03:01.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:01.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:01.300][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:03:01.301][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:03:01.303][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:01.304][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:01.305][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:03:01.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:03:01.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:01.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:01.311][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:01.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:01.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:01.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:01.316][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:01.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:01.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:01.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:01.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:01.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:01.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:01.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:01.326][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:01.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:01.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:01.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:01.331][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:01.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:01.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:01.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:01.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:01.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:01.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:01.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:01.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:01.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:01.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:01.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:01.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:01.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:01.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:01.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:01.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:01.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:01.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:01.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:01.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:01.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:01.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:01.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:01.361][self$createEntryFromContent] Accession numbers: 4648.
biodb.TRACE[2024-12-07 16:03:01.362][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:01.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:01.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:01.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:01.367][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:01.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:01.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:01.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:01.372][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:01.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:01.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:01.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:01.377][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:01.378][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:01.380][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:01.386][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:01.387][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:01.388][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:01.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:01.391][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:01.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:01.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:01.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:01.397][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:01.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:01.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:01.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:01.402][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:01.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:01.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:01.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:01.407][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:01.409][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:01.410][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:01.418][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:01.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:01.420][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:01.421][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:01.423][private$loadEntries] Creating entries from ids [1]: "62447".
biodb.DEBUG[2024-12-07 16:03:01.424][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:03:01.426][cch$loadFileContent] Trying to load 1 files from cache: [1]: "62447".
biodb.TRACE[2024-12-07 16:03:01.428][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:03:01.429][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:03:01.431][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:03:01.432][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:03:01.433][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:03:01.434][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:03:01.442][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:01.451][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:01.452][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:01.458][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:01.459][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:01.460][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:01.461][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:01.463][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=62447".
biodb.DEBUG[2024-12-07 16:03:01.466][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:03:01.468][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:03:01.469][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=62447".
biodb.TRACE[2024-12-07 16:03:01.905][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=62447).
biodb.DEBUG[2024-12-07 16:03:02.326][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:03:02.329][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ceadc6ac0ce91f601616e22be7c76851.content"
biodb.TRACE[2024-12-07 16:03:02.333][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ceadc6ac0ce91f601616e22be7c76851.request"
biodb.TRACE[2024-12-07 16:03:02.336][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62447.xml"
biodb.DEBUG[2024-12-07 16:03:02.338][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:03:02.340][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:03:02.341][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:03:02.343][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:02.344][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:02.345][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:02.351][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:02.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:02.354][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:02.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:02.357][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:02.359][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:02.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.361][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:02.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:02.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:02.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:02.368][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:03:02.369][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:03:02.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.371][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:02.373][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:03:02.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:03:02.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:02.378][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:02.379][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:02.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.381][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:02.383][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:02.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:02.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:02.388][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:02.389][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:02.390][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.391][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:02.393][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:02.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:02.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:02.398][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:02.399][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:02.400][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.401][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:02.403][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:02.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:02.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:02.408][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:02.409][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:02.410][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.412][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:02.413][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:03:02.414][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:02.416][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.417][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:02.418][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:03:02.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:02.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:02.423][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.424][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.427][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:02.428][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:02.433][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:02.435][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:02.436][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.437][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:02.439][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:02.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:02.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:02.444][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:03:02.445][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:03:02.446][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.447][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:02.449][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:03:02.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:03:02.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:02.454][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:03:02.455][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:03:02.457][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.458][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:02.459][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:03:02.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:03:02.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:02.465][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:02.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:02.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:02.470][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:02.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:02.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:02.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:02.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:02.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:02.480][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:02.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:02.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:02.485][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:02.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:02.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:02.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:02.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:02.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:02.495][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:02.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:02.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:02.501][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:02.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:02.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:02.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:02.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:02.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:02.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:02.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:02.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:02.516][self$createEntryFromContent] Accession numbers: 62447.
biodb.TRACE[2024-12-07 16:03:02.518][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:02.523][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:02.528][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:02.557][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:03:02.562][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:03:02.564][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-12-07 16:03:02.565][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:02.567][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-12-07 16:03:02.571][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:02.572][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:02.573][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:02.579][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:02.581][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:02.582][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:02.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:02.584][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:02.590][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:02.595][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:02.600][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:02.601][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:02.602][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:02.608][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:02.610][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:02.611][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:02.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:02.614][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:02.619][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:02.624][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:02.629][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:02.634][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:02.639][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:02.640][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:02.642][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:02.648][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:02.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:02.650][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:02.652][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:02.653][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:02.658][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:02.664][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:02.669][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:02.674][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:02.680][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:02.681][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:02.682][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:02.688][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:02.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:02.691][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:02.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:02.693][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:02.701][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:02.711][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:02.720][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:02.731][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:02.741][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:02.744][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:02.746][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:02.759][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:02.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:02.763][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:02.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:02.768][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:02.778][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:02.788][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:02.798][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:02.813][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:02.815][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:02.824][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:02.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:02.827][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:02.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:02.830][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:02.836][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:02.841][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:02.847][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:02.849][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:02.851][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:02.857][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:02.859][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:02.860][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:02.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:02.862][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:02.867][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:02.872][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:02.877][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:02.878][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:02.879][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:02.885][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:02.886][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:02.887][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:02.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:02.890][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:02.895][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:02.900][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:02.905][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:02.906][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:02.907][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:02.913][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:02.914][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:02.915][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:02.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:02.918][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:02.923][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:02.928][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:02.933][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:02.934][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:02.935][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:02.941][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:02.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:02.943][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:02.944][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:02.946][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:02.951][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:02.955][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:02.960][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:02.961][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:02.962][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:02.969][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:02.970][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:02.971][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:02.972][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:02.973][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:02.978][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:02.983][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:02.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:02.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:02.988][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:02.989][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:02.990][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:02.996][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:02.998][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:02.999][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:03.000][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:03.001][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.006][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.011][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:03.016][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:03.017][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:03.018][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:03.024][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:03.025][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:03.027][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:03.028][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:03.029][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.034][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.039][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:03.044][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:03.045][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:03.046][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:03.052][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:03.053][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:03.054][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:03.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:03.057][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.062][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.067][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:03.072][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:03.073][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:03.074][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:03.080][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:03.082][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:03.083][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:03.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:03.085][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.090][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.095][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:03.100][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:03.101][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:03.102][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:03.109][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:03.110][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:03.111][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:03.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:03.113][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.118][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.123][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:03.128][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:03.129][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:03.130][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:03.137][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:03.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:03.139][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:03.140][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:03.141][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.146][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.151][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:03.156][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:03.157][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:03.158][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:03.164][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:03.166][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:03.167][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:03.168][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:03.169][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.174][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.179][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:03.184][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:03.185][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:03.186][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:03.192][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:03.193][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:03.195][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:03.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:03.197][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.202][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.207][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:03.212][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:03.213][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:03.214][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:03.220][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:03.221][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:03.222][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:03.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:03.225][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.230][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.235][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:03.266][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:03:03.270][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:03:03.272][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-12-07 16:03:03.273][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:03.275][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-12-07 16:03:03.279][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:03.280][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:03.281][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:03.287][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:03.288][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:03.289][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:03.290][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:03.292][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.297][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.302][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:03.307][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:03.308][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:03.309][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:03.315][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:03.316][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:03.317][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:03.318][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:03.320][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.325][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.330][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.334][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.339][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:03.344][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:03.345][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:03.346][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:03.353][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:03.354][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:03.355][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:03.356][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:03.357][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.362][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.367][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.373][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.380][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:03.385][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:03.386][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:03.387][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:03.394][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:03.395][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:03.396][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:03.397][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:03.398][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.403][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.408][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.413][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.418][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:03.423][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:03.424][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:03.425][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:03.431][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:03.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:03.434][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:03.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:03.436][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.441][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.446][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:03.451][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:03.452][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:03.453][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:03.460][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:03.461][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:03.462][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:03.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:03.465][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.469][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.474][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:03.479][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:03.481][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:03.482][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:03.488][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:03.489][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:03.490][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:03.491][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:03.493][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.498][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.502][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:03.507][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:03.508][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:03.510][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:03.516][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:03.517][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:03.518][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:03.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:03.520][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.525][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.530][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:03.535][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:03.536][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:03.537][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:03.544][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:03.545][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:03.546][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:03.547][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:03.549][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.554][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.559][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:03.564][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:03.565][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:03.566][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:03.572][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:03.574][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:03.575][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:03.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:03.577][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.582][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.587][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:03.592][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:03.593][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:03.594][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:03.601][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:03.602][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:03.603][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:03.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:03.606][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.611][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.616][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:03.621][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:03.622][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:03.623][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:03.630][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:03.631][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:03.632][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:03.633][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:03.635][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.640][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.645][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:03.650][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:03.651][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:03.652][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:03.659][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:03.660][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:03.661][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:03.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:03.664][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.669][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.674][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:03.679][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:03.680][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:03.681][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:03.688][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:03.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:03.690][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:03.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:03.693][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.698][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.708][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:03.713][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:03.714][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:03.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:03.722][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:03.723][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:03.724][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:03.725][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:03.727][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.731][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.736][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:03.741][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:03.742][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:03.744][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:03.750][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:03.751][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:03.752][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:03.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:03.755][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.760][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.765][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:03.770][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:03.771][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:03.772][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:03.778][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:03.779][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:03.780][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:03.782][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:03.783][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.788][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.793][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:03.798][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:03.799][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:03.800][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:03.806][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:03.808][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:03.809][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:03.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:03.811][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.816][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.821][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:03.826][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:03.827][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:03.828][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:03.835][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:03.836][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:03.837][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:03.838][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:03.840][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.845][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.850][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:03.855][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:03.856][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:03.857][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:03.863][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:03.865][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:03.866][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:03.867][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:03.868][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.874][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.879][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:03.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.904][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-12-07 16:03:03.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-12-07 16:03:03.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-12-07 16:03:03.920][biodb::testThat]
biodb.INFO [2024-12-07 16:03:03.922][biodb::testThat] Running test function test_annotateMzValues_input_vector (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2024-12-07 16:03:03.923][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:03:03.924][biodb::testThat]
biodb.TRACE[2024-12-07 16:03:03.928][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-07 16:03:03.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-07 16:03:03.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.933][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-07 16:03:03.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-07 16:03:03.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.938][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-07 16:03:03.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-07 16:03:03.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.943][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:03.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:03.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.948][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:03.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:03.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.953][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:03.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:03.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.958][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:03.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:03.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.963][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:03.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:03.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.968][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:03.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:03.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.973][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:03.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:03.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.978][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:03.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:03.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.983][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:03.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:03.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.988][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:03.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:03.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.993][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:03.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:03.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:03.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:03.998][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:03.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:04.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:04.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:04.006][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:04.007][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:04.008][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:04.015][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:04.016][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:04.017][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:04.018][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:04.022][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:03:04.026][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:03:04.028][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-12-07 16:03:04.029][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:04.031][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-12-07 16:03:04.034][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:04.035][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:04.036][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:04.042][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:04.044][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:04.045][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:04.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:04.047][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:04.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:04.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:04.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:04.052][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:04.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:04.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:04.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:04.058][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:04.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:04.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:04.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:04.064][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:03:04.068][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:03:04.070][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-12-07 16:03:04.072][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:04.073][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-12-07 16:03:04.077][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:04.078][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:04.079][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:04.085][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:04.086][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:04.087][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:04.088][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:04.090][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:04.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:04.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:04.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:04.095][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:04.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:04.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:04.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:04.100][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:04.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:04.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:04.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:04.105][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:04.106][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:04.107][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:04.113][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:04.114][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:04.115][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:04.116][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:04.118][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:04.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:04.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:04.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:04.123][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:04.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:04.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:04.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:04.128][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:04.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:04.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:04.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:04.133][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:03:04.135][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:04.136][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:04.137][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:04.143][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:04.145][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:04.146][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:04.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:04.148][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:04.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:04.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:04.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:04.153][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:04.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:04.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:04.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:04.163][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:04.164][private$selectFields]
biodb.TRACE[2024-12-07 16:03:04.165][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:04.167][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:04.168][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:04.169][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:04.170][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:04.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:04.173][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:04.174][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:04.175][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:04.176][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:04.177][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:04.179][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:04.180][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:04.181][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:04.182][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:04.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:04.185][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:04.186][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:03:04.187][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:04.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:04.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:04.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:04.192][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:04.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:04.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:04.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:04.197][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:04.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:04.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:04.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:04.214][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2024-12-07 16:03:04.215][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:04.216][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:04.217][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:04.223][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:04.225][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:04.226][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:04.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:04.228][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:04.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:04.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:04.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:04.233][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:04.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:04.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:04.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:04.238][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:04.239][private$selectFields]
biodb.TRACE[2024-12-07 16:03:04.240][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:04.241][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:04.243][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:04.244][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:04.245][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:04.246][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:04.247][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:04.249][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:04.250][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:04.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:04.252][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:04.253][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:04.255][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:04.256][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:04.257][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:04.258][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:04.259][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:04.261][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:03:04.262][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:04.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:04.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:04.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:04.267][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:04.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:04.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:04.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:04.272][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:04.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:04.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:04.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:04.277][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-12-07 16:03:04.278][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:04.279][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:04.281][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:04.287][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:04.288][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:04.289][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:04.290][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:04.291][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:04.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:04.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:04.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:04.296][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:04.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:04.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:04.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:04.301][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:04.302][private$selectFields]
biodb.TRACE[2024-12-07 16:03:04.303][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:04.304][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:04.306][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:04.307][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:04.308][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:04.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:04.311][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:04.312][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:04.313][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:04.314][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:04.315][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:04.317][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:04.318][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:04.319][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:04.321][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:04.322][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:04.323][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:04.324][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:03:04.325][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:04.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:04.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:04.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:04.331][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:04.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:04.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:04.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:04.336][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:04.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:04.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:04.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:04.341][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2024-12-07 16:03:04.342][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:03:04.343][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:03:04.347][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:04.348][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:04.349][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:04.355][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:04.356][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:04.358][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:04.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:04.362][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:03:04.366][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:03:04.368][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:03:04.370][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-12-07 16:03:04.793][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-12-07 16:03:05.213][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:03:05.215][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content"
biodb.TRACE[2024-12-07 16:03:05.220][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.request"
biodb.DEBUG[2024-12-07 16:03:05.224][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:05.225][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:05.226][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:05.232][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:05.233][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:05.234][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:05.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:05.237][private$loadEntries] Creating entries from ids [1]: "113227".
biodb.DEBUG[2024-12-07 16:03:05.238][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:03:05.240][cch$loadFileContent] Trying to load 1 files from cache: [1]: "113227".
biodb.TRACE[2024-12-07 16:03:05.242][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:03:05.243][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:03:05.244][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:03:05.245][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:03:05.247][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:03:05.248][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:03:05.251][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:05.252][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:05.253][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:05.259][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:05.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:05.262][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:05.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:05.264][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=113227".
biodb.DEBUG[2024-12-07 16:03:05.268][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:03:05.269][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:03:05.271][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=113227".
biodb.TRACE[2024-12-07 16:03:05.703][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=113227).
biodb.DEBUG[2024-12-07 16:03:06.122][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:03:06.125][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ed496dac459a2ba62e671edbcae22326.content"
biodb.TRACE[2024-12-07 16:03:06.129][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ed496dac459a2ba62e671edbcae22326.request"
biodb.TRACE[2024-12-07 16:03:06.133][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/113227.xml"
biodb.DEBUG[2024-12-07 16:03:06.135][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:03:06.136][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:03:06.138][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:03:06.140][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:06.141][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:06.142][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:06.149][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:06.150][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:06.151][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:06.152][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:06.155][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:06.156][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:06.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:06.158][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:06.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:06.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:06.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:06.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:06.165][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:03:06.166][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:03:06.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:06.169][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:06.170][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:03:06.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:03:06.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:06.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:06.175][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:06.177][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:06.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:06.179][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:06.181][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:06.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:06.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:06.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:06.186][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:06.187][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:06.188][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:06.190][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:06.191][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:06.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:06.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:06.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:06.196][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:06.198][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:06.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:06.200][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:06.201][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:06.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:06.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:06.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:06.207][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:06.208][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:06.209][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:06.210][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:06.212][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:03:06.213][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:06.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:06.216][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:06.217][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:03:06.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:06.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:06.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:06.222][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:06.224][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:06.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:06.226][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:06.228][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:06.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:06.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:06.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:06.233][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:06.234][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:06.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:06.236][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:06.238][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:06.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:06.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:06.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:06.243][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:03:06.245][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:03:06.246][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:06.247][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:06.249][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:03:06.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:03:06.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:06.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:06.254][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:03:06.255][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:03:06.256][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:06.257][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:06.259][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:03:06.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:03:06.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:06.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:06.264][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:06.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:06.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:06.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:06.269][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:06.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:06.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:06.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:06.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:06.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:06.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:06.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:06.290][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:06.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:06.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:06.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:06.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:06.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:06.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:06.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:06.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:06.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:06.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:06.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:06.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:06.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:06.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:06.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:06.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:06.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:06.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:06.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:06.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:06.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:06.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:06.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:06.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:06.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:06.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:06.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:06.325][self$createEntryFromContent] Accession numbers: 113227.
biodb.TRACE[2024-12-07 16:03:06.326][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:06.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:06.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:06.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:06.331][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:06.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:06.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:06.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:06.336][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:06.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:06.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:06.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:06.341][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:06.342][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:06.343][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:06.349][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:06.350][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:06.351][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:06.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:06.354][private$loadEntries] Creating entries from ids [1]: "169712".
biodb.DEBUG[2024-12-07 16:03:06.355][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:03:06.357][cch$loadFileContent] Trying to load 1 files from cache: [1]: "169712".
biodb.TRACE[2024-12-07 16:03:06.358][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:03:06.360][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:03:06.361][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:03:06.362][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:03:06.364][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:03:06.365][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:03:06.368][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:06.369][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:06.370][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:06.376][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:06.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:06.379][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:06.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:06.381][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169712".
biodb.DEBUG[2024-12-07 16:03:06.385][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:03:06.386][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:03:06.388][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169712".
biodb.TRACE[2024-12-07 16:03:06.832][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169712).
biodb.DEBUG[2024-12-07 16:03:07.254][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:03:07.257][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6e52d7b9d801aec68d97cc03bd4acc90.content"
biodb.TRACE[2024-12-07 16:03:07.261][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6e52d7b9d801aec68d97cc03bd4acc90.request"
biodb.TRACE[2024-12-07 16:03:07.265][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169712.xml"
biodb.DEBUG[2024-12-07 16:03:07.273][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:03:07.274][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:03:07.276][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:03:07.310][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:07.312][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:07.313][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:07.324][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:07.325][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:07.326][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:07.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:07.330][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:07.334][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:07.336][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:07.337][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:07.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:07.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:07.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:07.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:07.343][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:03:07.345][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:03:07.346][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:07.347][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:07.348][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:03:07.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:03:07.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:07.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:07.354][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:07.355][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:07.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:07.357][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:07.359][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:07.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:07.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:07.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:07.364][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:07.365][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:07.367][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:07.368][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:07.369][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:07.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:07.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:07.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:07.374][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:07.376][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:07.377][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:07.378][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:07.380][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:07.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:07.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:07.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:07.385][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:07.386][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:07.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:07.388][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:07.390][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:03:07.391][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:07.392][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:07.393][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:07.395][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:03:07.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:07.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:07.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:07.400][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:07.401][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:07.403][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:07.404][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:07.405][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:07.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:07.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:07.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:07.410][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:07.412][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:07.413][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:07.414][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:07.416][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:07.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:07.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:07.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:07.422][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:03:07.423][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:03:07.425][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:07.426][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:07.427][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:03:07.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:03:07.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:07.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:07.432][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:03:07.434][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:03:07.435][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:07.436][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:07.438][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:03:07.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:03:07.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:07.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:07.443][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:07.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:07.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:07.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:07.448][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:07.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:07.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:07.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:07.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:07.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:07.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:07.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:07.458][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:07.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:07.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:07.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:07.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:07.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:07.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:07.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:07.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:07.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:07.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:07.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:07.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:07.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:07.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:07.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:07.478][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:07.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:07.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:07.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:07.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:07.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:07.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:07.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:07.488][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:07.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:07.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:07.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:07.493][self$createEntryFromContent] Accession numbers: 169712.
biodb.TRACE[2024-12-07 16:03:07.494][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:07.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:07.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:07.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:07.499][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:07.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:07.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:07.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:07.504][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:07.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:07.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:07.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:07.510][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:03:07.515][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:03:07.516][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:03:07.518][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-12-07 16:03:07.953][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-12-07 16:03:08.377][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:03:08.379][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content"
biodb.TRACE[2024-12-07 16:03:08.384][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.request"
biodb.DEBUG[2024-12-07 16:03:08.388][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:08.389][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:08.390][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:08.396][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:08.398][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:08.399][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:08.400][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:08.401][private$loadEntries] Creating entries from ids [1]: "4781".
biodb.DEBUG[2024-12-07 16:03:08.402][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:03:08.404][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4781".
biodb.TRACE[2024-12-07 16:03:08.406][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:03:08.407][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:03:08.409][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:03:08.410][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:03:08.411][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:03:08.412][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:03:08.416][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:08.417][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:08.418][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:08.424][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:08.425][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:08.426][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:08.428][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:08.429][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4781".
biodb.DEBUG[2024-12-07 16:03:08.433][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:03:08.434][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:03:08.436][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4781".
biodb.TRACE[2024-12-07 16:03:08.908][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4781).
biodb.DEBUG[2024-12-07 16:03:09.425][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:03:09.427][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e4869054c906476bc1e4ece10c7e53cc.content"
biodb.TRACE[2024-12-07 16:03:09.473][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e4869054c906476bc1e4ece10c7e53cc.request"
biodb.TRACE[2024-12-07 16:03:09.477][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4781.xml"
biodb.DEBUG[2024-12-07 16:03:09.479][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:03:09.480][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:03:09.482][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:03:09.484][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:09.485][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:09.486][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:09.492][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:09.493][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:09.494][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:09.496][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:09.499][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:09.500][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:09.501][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.502][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:09.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:09.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.509][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:03:09.510][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:03:09.524][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.526][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.527][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:03:09.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:03:09.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.532][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:09.534][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:09.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.536][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.538][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:09.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:09.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.543][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:09.544][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:09.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.547][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.548][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:09.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:09.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.553][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:09.554][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:09.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.557][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.558][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:09.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:09.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.563][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:09.565][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:09.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.567][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.569][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:09.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:09.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.574][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:03:09.575][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:09.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.577][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.579][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:03:09.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:09.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.584][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:09.585][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:09.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.587][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.589][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:09.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:09.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.594][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:09.595][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:09.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.598][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.599][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:09.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:09.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.605][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:03:09.606][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:03:09.607][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.608][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.610][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:03:09.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:03:09.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.615][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:03:09.616][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:03:09.617][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.618][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.620][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:03:09.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:03:09.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:09.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:09.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.630][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:09.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:09.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:09.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:09.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.640][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:09.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:09.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.645][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:09.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:09.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:09.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:09.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:09.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:09.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:09.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:09.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:09.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:09.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:09.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:09.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:09.675][self$createEntryFromContent] Accession numbers: 4781.
biodb.TRACE[2024-12-07 16:03:09.677][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:09.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:09.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.682][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:09.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:09.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.687][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:09.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:09.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:09.692][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:09.693][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:09.695][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:09.701][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:09.702][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:09.703][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:09.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:09.706][private$loadEntries] Creating entries from ids [1]: "16587".
biodb.DEBUG[2024-12-07 16:03:09.707][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:03:09.709][cch$loadFileContent] Trying to load 1 files from cache: [1]: "16587".
biodb.TRACE[2024-12-07 16:03:09.711][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:03:09.712][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:03:09.713][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:03:09.715][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:03:09.716][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:03:09.717][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:03:09.720][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:09.722][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:09.723][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:09.729][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:09.730][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:09.731][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:09.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:09.734][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=16587".
biodb.DEBUG[2024-12-07 16:03:09.737][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:03:09.739][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:03:09.740][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=16587".
biodb.TRACE[2024-12-07 16:03:10.157][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=16587).
biodb.DEBUG[2024-12-07 16:03:10.579][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:03:10.582][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6012905c0932919c069ecb5afc0b487b.content"
biodb.TRACE[2024-12-07 16:03:10.586][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6012905c0932919c069ecb5afc0b487b.request"
biodb.TRACE[2024-12-07 16:03:10.589][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/16587.xml"
biodb.DEBUG[2024-12-07 16:03:10.592][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:03:10.593][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:03:10.594][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:03:10.597][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:10.598][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:10.599][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:10.605][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:10.606][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:10.607][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:10.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:10.611][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:10.612][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:10.613][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.615][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:10.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:10.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.621][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:03:10.622][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:03:10.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.625][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.626][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:03:10.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:03:10.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.631][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:10.632][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:10.634][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.635][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.637][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:10.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:10.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.642][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:10.643][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:10.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.645][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.647][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:10.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:10.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.652][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:10.653][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:10.654][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.655][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.657][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:10.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:10.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.662][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:10.663][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:10.664][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.665][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.667][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:10.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:10.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.672][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:03:10.673][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:10.674][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.675][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.677][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:03:10.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:10.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.682][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:10.683][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:10.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.686][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.687][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:10.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:10.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.692][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:10.693][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:10.694][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.696][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.697][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:10.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:10.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.703][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:03:10.704][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:03:10.705][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.706][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.708][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:03:10.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:03:10.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.713][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:03:10.714][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:03:10.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.716][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.718][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:03:10.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:03:10.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.723][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:10.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:10.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.728][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:10.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:10.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:10.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:10.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.738][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:10.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:10.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:10.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:10.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:10.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:10.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:10.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:10.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:10.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:10.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:10.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:10.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.768][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:10.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:10.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:10.773][self$createEntryFromContent] Accession numbers: 16587.
biodb.TRACE[2024-12-07 16:03:10.774][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:10.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:10.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.779][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:10.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:10.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.784][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:10.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:10.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:10.796][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:10.797][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:10.799][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:10.805][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:10.806][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:10.807][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:10.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:10.809][private$loadEntries] Creating entries from ids [1]: "19804".
biodb.DEBUG[2024-12-07 16:03:10.810][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:03:10.812][cch$loadFileContent] Trying to load 1 files from cache: [1]: "19804".
biodb.TRACE[2024-12-07 16:03:10.814][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:03:10.815][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:03:10.816][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:03:10.818][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:03:10.819][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:03:10.820][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:03:10.823][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:10.824][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:10.825][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:10.831][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:10.833][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:10.834][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:10.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:10.836][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=19804".
biodb.DEBUG[2024-12-07 16:03:10.840][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:03:10.841][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:03:10.843][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=19804".
biodb.TRACE[2024-12-07 16:03:11.278][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=19804).
biodb.DEBUG[2024-12-07 16:03:11.698][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:03:11.701][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef7e014212775cbaa9299e60f32b2bcd.content"
biodb.TRACE[2024-12-07 16:03:11.705][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef7e014212775cbaa9299e60f32b2bcd.request"
biodb.TRACE[2024-12-07 16:03:11.708][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/19804.xml"
biodb.DEBUG[2024-12-07 16:03:11.710][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:03:11.712][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:03:11.713][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:03:11.715][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:11.716][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:11.717][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:11.724][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:11.725][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:11.726][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:11.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:11.730][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:11.731][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:11.732][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.733][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:11.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:11.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.740][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:03:11.741][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:03:11.742][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.744][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.745][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:03:11.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:03:11.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.750][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:11.752][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:11.753][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.754][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.755][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:11.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:11.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.760][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:11.762][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:11.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.764][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.766][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:11.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:11.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.771][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:11.772][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:11.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.775][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.776][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:11.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:11.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.781][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:11.783][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:11.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.785][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.787][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:03:11.788][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:11.789][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.790][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.792][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:03:11.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:11.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.797][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:11.798][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:11.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.801][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.802][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:11.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:11.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.807][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:11.809][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:11.810][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.811][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.813][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:11.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:11.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.818][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:03:11.819][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:03:11.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.821][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.823][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:03:11.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:03:11.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.828][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:03:11.830][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:03:11.831][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.832][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.834][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:03:11.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:03:11.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.839][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:11.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:11.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.844][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:11.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:11.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:11.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:11.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.854][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:11.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:11.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:11.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:11.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:11.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:11.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:11.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:11.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:11.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:11.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:11.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:11.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:11.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:11.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:11.888][self$createEntryFromContent] Accession numbers: 19804.
biodb.TRACE[2024-12-07 16:03:11.889][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:11.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:11.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.894][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:11.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:11.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.899][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:11.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:11.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:11.935][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:03:11.968][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:11.969][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:11.970][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:11.976][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:11.977][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:11.978][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:11.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:11.981][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:11.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:11.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.986][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:11.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:11.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.990][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:11.992][private$selectFields]
biodb.TRACE[2024-12-07 16:03:11.993][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:11.994][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:11.995][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:11.996][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:11.998][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:11.999][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:12.000][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:12.001][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:12.002][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:12.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:12.005][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:12.006][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:12.007][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:12.008][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:12.010][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:12.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:12.012][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:12.013][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:03:12.014][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:12.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:12.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:12.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:12.019][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:12.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:12.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:12.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:12.024][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:12.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:12.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:12.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:12.030][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-12-07 16:03:12.031][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:12.032][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:12.033][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:12.039][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:12.040][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:12.041][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:12.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:12.044][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:12.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:12.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:12.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:12.049][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:12.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:12.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:12.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:12.054][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:12.055][private$selectFields]
biodb.TRACE[2024-12-07 16:03:12.056][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:12.065][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:12.066][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:12.067][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:12.068][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:12.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:12.071][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:12.072][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:12.073][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:12.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:12.076][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:12.077][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:12.078][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:12.079][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:12.080][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:12.081][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:12.083][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:12.084][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:03:12.085][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:12.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:12.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:12.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:12.090][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:12.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:12.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:12.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:12.095][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:12.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:12.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:12.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:12.100][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2024-12-07 16:03:12.101][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:12.102][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:12.103][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:12.109][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:12.110][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:12.112][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:12.113][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:12.114][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:12.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:12.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:12.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:12.119][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:12.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:12.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:12.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:12.124][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:12.125][private$selectFields]
biodb.TRACE[2024-12-07 16:03:12.126][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:12.127][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:12.128][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:12.129][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:12.131][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:12.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:12.133][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:12.134][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:12.135][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:12.137][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:12.138][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:12.139][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:12.140][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:12.141][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:12.143][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:12.144][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:12.145][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:12.146][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:03:12.147][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:12.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:12.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:12.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:12.152][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:12.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:12.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:12.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:12.157][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:12.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:12.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:12.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:12.163][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2024-12-07 16:03:12.164][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:03:12.165][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:03:12.167][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:12.168][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:12.170][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:12.175][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:12.177][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:12.178][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:12.179][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:12.182][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:03:12.186][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:03:12.188][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:03:12.190][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-12-07 16:03:12.613][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-12-07 16:03:13.030][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:03:13.032][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content"
biodb.TRACE[2024-12-07 16:03:13.038][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.request"
biodb.DEBUG[2024-12-07 16:03:13.041][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:13.043][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:13.044][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:13.050][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:13.052][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:13.053][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:13.054][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:13.055][private$loadEntries] Creating entries from ids [1]: "159630".
biodb.DEBUG[2024-12-07 16:03:13.057][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:03:13.059][cch$loadFileContent] Trying to load 1 files from cache: [1]: "159630".
biodb.TRACE[2024-12-07 16:03:13.061][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:03:13.062][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:03:13.063][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:03:13.065][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:03:13.066][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:03:13.067][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:03:13.071][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:13.072][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:13.073][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:13.080][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:13.081][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:13.082][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:13.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:13.085][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=159630".
biodb.DEBUG[2024-12-07 16:03:13.088][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:03:13.089][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:03:13.091][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=159630".
biodb.TRACE[2024-12-07 16:03:13.540][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=159630).
biodb.DEBUG[2024-12-07 16:03:13.958][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:03:13.960][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f9497c6792bdb2528746e6a81b02589e.content"
biodb.TRACE[2024-12-07 16:03:13.965][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f9497c6792bdb2528746e6a81b02589e.request"
biodb.TRACE[2024-12-07 16:03:13.968][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/159630.xml"
biodb.DEBUG[2024-12-07 16:03:13.970][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:03:13.972][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:03:13.973][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:03:13.975][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:13.976][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:13.977][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:13.984][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:13.985][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:13.986][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:13.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:13.990][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:13.991][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:13.993][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:13.994][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:13.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:13.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:13.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:13.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.000][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:03:14.002][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:03:14.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.004][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.006][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:03:14.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:03:14.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.011][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:14.012][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:14.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.014][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.016][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:14.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:14.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.021][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:14.023][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:14.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.025][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.027][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:14.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:14.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.032][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:14.033][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:14.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.035][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.037][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:14.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:14.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.042][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:14.043][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:14.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.046][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.048][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:03:14.049][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:14.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.051][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.053][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:03:14.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:14.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.058][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:14.059][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:14.061][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.062][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.063][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:14.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:14.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.068][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:14.070][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:14.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.072][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.074][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:14.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:14.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.079][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:03:14.080][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:03:14.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.083][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.084][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:03:14.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:03:14.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.089][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:03:14.091][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:03:14.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.093][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.095][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:03:14.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:03:14.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.100][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:14.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:14.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.105][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:14.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:14.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:14.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:14.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.116][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:14.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:14.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:14.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:14.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:14.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:14.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.132][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:14.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:14.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:14.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:14.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:14.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:14.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:14.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:14.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:14.153][self$createEntryFromContent] Accession numbers: 159630.
biodb.TRACE[2024-12-07 16:03:14.154][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:14.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:14.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.159][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:14.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:14.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.164][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:14.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:14.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:14.169][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:14.170][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:14.171][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:14.178][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:14.179][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:14.180][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:14.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:14.183][private$loadEntries] Creating entries from ids [1]: "160202".
biodb.DEBUG[2024-12-07 16:03:14.184][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:03:14.186][cch$loadFileContent] Trying to load 1 files from cache: [1]: "160202".
biodb.TRACE[2024-12-07 16:03:14.188][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:03:14.189][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:03:14.190][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:03:14.192][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:03:14.193][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:03:14.194][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:03:14.208][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:14.209][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:14.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:14.217][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:14.218][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:14.219][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:14.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:14.222][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160202".
biodb.DEBUG[2024-12-07 16:03:14.225][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:03:14.227][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:03:14.228][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160202".
biodb.TRACE[2024-12-07 16:03:14.681][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160202).
biodb.DEBUG[2024-12-07 16:03:15.107][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:03:15.109][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1de9586ccaafdf8e637928dc3e313d63.content"
biodb.TRACE[2024-12-07 16:03:15.113][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1de9586ccaafdf8e637928dc3e313d63.request"
biodb.TRACE[2024-12-07 16:03:15.117][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160202.xml"
biodb.DEBUG[2024-12-07 16:03:15.119][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:03:15.120][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:03:15.122][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:03:15.123][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:15.124][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:15.126][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:15.132][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:15.133][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:15.134][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:15.135][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:15.138][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:15.139][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:15.140][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.142][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:15.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:15.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.148][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:03:15.149][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:03:15.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.151][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.153][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:03:15.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:03:15.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.158][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:15.159][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:15.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.161][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.163][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:15.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:15.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.168][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:15.169][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:15.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.172][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.173][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:15.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:15.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.178][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:15.179][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:15.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.182][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.183][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:15.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:15.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.188][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:15.189][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:15.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.192][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.193][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:03:15.195][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:15.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.197][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.198][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:03:15.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:15.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.203][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:15.205][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:15.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.207][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.209][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:15.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:15.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.214][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:15.215][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:15.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.217][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.219][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:15.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:15.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.224][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:03:15.225][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:03:15.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.228][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.229][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:03:15.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:03:15.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.234][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:03:15.235][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:03:15.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.238][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.239][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:03:15.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:03:15.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.244][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:15.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:15.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.249][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:15.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:15.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.254][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:15.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:15.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.259][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:15.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:15.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:15.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:15.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:15.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:15.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:15.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:15.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:15.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:15.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:15.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:15.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:15.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:15.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:15.294][self$createEntryFromContent] Accession numbers: 160202.
biodb.TRACE[2024-12-07 16:03:15.296][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:15.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:15.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.301][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:15.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:15.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.306][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:15.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:15.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:15.311][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:15.312][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:15.313][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:15.319][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:15.321][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:15.322][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:15.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:15.324][private$loadEntries] Creating entries from ids [1]: "160393".
biodb.DEBUG[2024-12-07 16:03:15.326][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:03:15.328][cch$loadFileContent] Trying to load 1 files from cache: [1]: "160393".
biodb.TRACE[2024-12-07 16:03:15.329][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:03:15.331][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:03:15.332][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:03:15.333][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:03:15.335][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:03:15.336][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:03:15.339][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:15.340][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:15.341][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:15.348][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:15.349][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:15.350][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:15.351][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:15.353][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160393".
biodb.DEBUG[2024-12-07 16:03:15.356][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:03:15.357][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:03:15.359][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160393".
biodb.TRACE[2024-12-07 16:03:16.017][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160393).
biodb.DEBUG[2024-12-07 16:03:16.439][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:03:16.441][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e0266c32050b31cda3d5e01c2d907fcd.content"
biodb.TRACE[2024-12-07 16:03:16.446][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e0266c32050b31cda3d5e01c2d907fcd.request"
biodb.TRACE[2024-12-07 16:03:16.449][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160393.xml"
biodb.DEBUG[2024-12-07 16:03:16.452][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:03:16.453][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:03:16.455][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:03:16.457][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:16.458][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:16.459][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:16.465][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:16.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:16.468][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:16.469][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:16.472][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:16.473][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:16.474][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.476][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:16.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:16.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.482][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:03:16.484][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:03:16.485][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.486][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.487][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:03:16.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:03:16.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.493][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:16.494][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:16.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.496][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.498][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:16.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:16.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.503][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:16.504][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:16.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.507][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.508][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:16.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:16.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.513][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:16.515][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:16.516][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.517][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.519][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:16.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:16.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.524][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:16.525][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:16.527][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.528][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.529][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:03:16.531][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:16.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.533][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.535][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:03:16.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:16.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.540][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:16.541][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:16.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.543][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.545][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:16.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:16.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.550][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:16.552][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:16.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.554][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.556][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:16.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:16.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.561][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:03:16.562][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:03:16.563][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.565][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.566][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:03:16.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:03:16.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.571][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:03:16.573][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:03:16.574][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.575][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.576][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:03:16.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:03:16.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.582][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:16.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:16.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.587][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:16.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:16.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:16.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:16.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.607][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:16.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:16.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:16.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:16.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:16.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:16.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:16.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:16.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:16.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:16.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:16.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:16.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:16.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:16.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:16.642][self$createEntryFromContent] Accession numbers: 160393.
biodb.TRACE[2024-12-07 16:03:16.643][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:16.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:16.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.648][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:16.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:16.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.653][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:16.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:16.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:16.658][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:16.659][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:16.660][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:16.666][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:16.667][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:16.668][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:16.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:16.671][private$loadEntries] Creating entries from ids [1]: "160991".
biodb.DEBUG[2024-12-07 16:03:16.672][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:03:16.674][cch$loadFileContent] Trying to load 1 files from cache: [1]: "160991".
biodb.TRACE[2024-12-07 16:03:16.676][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:03:16.677][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:03:16.678][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:03:16.680][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:03:16.681][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:03:16.682][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:03:16.685][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:16.686][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:16.687][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:16.694][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:16.695][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:16.696][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:16.697][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:16.699][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160991".
biodb.DEBUG[2024-12-07 16:03:16.703][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:03:16.704][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:03:16.706][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160991".
biodb.TRACE[2024-12-07 16:03:17.140][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160991).
biodb.DEBUG[2024-12-07 16:03:17.556][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:03:17.559][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6bad8d3e957240d90a71edc1329f8f37.content"
biodb.TRACE[2024-12-07 16:03:17.563][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6bad8d3e957240d90a71edc1329f8f37.request"
biodb.TRACE[2024-12-07 16:03:17.567][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160991.xml"
biodb.DEBUG[2024-12-07 16:03:17.569][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:03:17.570][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:03:17.571][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:03:17.573][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:17.575][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:17.576][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:17.582][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:17.583][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:17.584][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:17.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:17.588][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:17.590][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:17.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.592][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.594][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:17.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:17.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.599][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:03:17.600][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:03:17.601][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.602][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.604][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:03:17.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:03:17.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.609][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:17.611][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:17.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.613][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.615][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:17.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:17.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.620][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:17.621][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:17.622][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.623][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.625][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:17.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:17.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.630][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:17.631][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:17.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.634][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.635][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:17.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:17.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.640][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:17.642][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:17.643][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.644][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.646][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:03:17.647][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:17.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.649][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.651][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:03:17.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:17.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.656][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:17.657][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:17.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.659][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.661][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:17.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:17.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.666][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:17.667][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:17.669][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.670][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.672][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:17.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:17.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.677][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:03:17.678][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:03:17.679][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.680][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.682][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:03:17.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:03:17.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.687][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:03:17.688][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:03:17.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.690][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.692][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:03:17.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:03:17.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.697][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:17.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:17.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.702][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:17.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:17.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:17.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:17.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.712][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:17.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:17.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:17.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:17.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.722][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:17.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:17.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:17.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:17.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:17.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:17.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:17.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:17.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:17.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:17.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:17.747][self$createEntryFromContent] Accession numbers: 160991.
biodb.TRACE[2024-12-07 16:03:17.748][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:17.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:17.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.753][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:17.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:17.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.758][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:17.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:17.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:17.763][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:17.764][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:17.765][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:17.772][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:17.773][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:17.774][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:17.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:17.776][private$loadEntries] Creating entries from ids [1]: "164975".
biodb.DEBUG[2024-12-07 16:03:17.778][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:03:17.780][cch$loadFileContent] Trying to load 1 files from cache: [1]: "164975".
biodb.TRACE[2024-12-07 16:03:17.781][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:03:17.783][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:03:17.784][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:03:17.785][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:03:17.787][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:03:17.788][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:03:17.791][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:17.792][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:17.794][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:17.800][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:17.801][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:17.802][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:17.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:17.805][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164975".
biodb.DEBUG[2024-12-07 16:03:17.808][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:03:17.810][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:03:17.811][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164975".
biodb.TRACE[2024-12-07 16:03:18.250][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164975).
biodb.DEBUG[2024-12-07 16:03:18.664][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:03:18.667][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b1cbfaf7aef2d62dc8db3306c1521943.content"
biodb.TRACE[2024-12-07 16:03:18.671][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b1cbfaf7aef2d62dc8db3306c1521943.request"
biodb.TRACE[2024-12-07 16:03:18.674][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/164975.xml"
biodb.DEBUG[2024-12-07 16:03:18.676][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:03:18.678][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:03:18.679][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:03:18.681][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:18.682][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:18.683][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:18.690][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:18.691][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:18.692][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:18.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:18.696][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:18.697][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:18.698][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.699][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:18.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:18.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.706][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:03:18.707][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:03:18.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.709][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.711][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:03:18.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:03:18.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.716][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:18.717][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:18.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.720][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.721][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:18.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:18.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.737][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:18.738][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:18.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.741][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.742][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:18.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:18.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.747][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:18.749][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:18.750][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.751][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.753][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:18.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:18.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.758][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:18.759][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:18.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.762][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.763][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:03:18.764][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:18.766][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.767][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.768][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:03:18.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:18.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.773][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:18.775][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:18.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.777][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.778][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:18.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:18.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.783][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:18.785][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:18.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.787][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.789][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:18.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:18.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.794][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:03:18.795][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:03:18.796][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.798][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.799][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:03:18.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:03:18.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.804][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:03:18.805][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:03:18.807][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.808][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.809][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:03:18.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:03:18.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.814][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:18.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:18.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.819][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:18.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:18.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.824][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:18.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:18.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.829][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:18.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:18.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.834][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:18.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:18.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.839][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:18.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:18.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:18.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:18.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:18.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:18.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:18.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:18.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:18.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:18.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:18.864][self$createEntryFromContent] Accession numbers: 164975.
biodb.TRACE[2024-12-07 16:03:18.865][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:18.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:18.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.870][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:18.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:18.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.875][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:18.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:18.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:18.880][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:18.881][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:18.882][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:18.888][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:18.890][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:18.891][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:18.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:18.893][private$loadEntries] Creating entries from ids [1]: "164994".
biodb.DEBUG[2024-12-07 16:03:18.894][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:03:18.896][cch$loadFileContent] Trying to load 1 files from cache: [1]: "164994".
biodb.TRACE[2024-12-07 16:03:18.898][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:03:18.899][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:03:18.901][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:03:18.902][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:03:18.903][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:03:18.904][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:03:18.908][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:18.909][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:18.910][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:18.916][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:18.917][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:18.918][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:18.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:18.921][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164994".
biodb.DEBUG[2024-12-07 16:03:18.925][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:03:18.926][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:03:18.928][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164994".
biodb.TRACE[2024-12-07 16:03:19.359][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164994).
biodb.DEBUG[2024-12-07 16:03:19.778][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:03:19.781][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c2789f33696a1a62a1d6cd81e3041cd1.content"
biodb.TRACE[2024-12-07 16:03:19.785][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c2789f33696a1a62a1d6cd81e3041cd1.request"
biodb.TRACE[2024-12-07 16:03:19.789][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/164994.xml"
biodb.DEBUG[2024-12-07 16:03:19.790][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:03:19.792][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:03:19.793][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:03:19.795][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:19.796][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:19.798][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:19.804][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:19.805][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:19.806][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:19.807][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:19.810][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:19.811][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:19.813][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.814][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:19.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:19.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.820][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:03:19.822][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:03:19.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.824][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.825][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:03:19.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:03:19.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.830][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:19.832][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:19.833][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.834][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.836][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:19.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:19.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.841][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:19.842][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:19.843][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.845][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.846][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:19.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:19.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.851][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:19.852][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:19.854][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.855][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.856][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:19.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:19.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.861][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:19.863][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:19.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.865][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.867][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:03:19.868][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:19.869][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.870][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.872][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:03:19.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:19.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.877][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:19.878][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:19.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.881][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.882][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:19.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:19.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.887][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:19.888][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:19.890][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.891][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.893][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:19.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:19.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.898][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:03:19.899][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:03:19.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.901][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.903][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:03:19.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:03:19.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.908][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:03:19.909][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:03:19.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.911][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.913][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:03:19.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:03:19.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.918][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:19.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:19.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.923][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:19.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:19.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:19.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:19.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.933][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:19.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:19.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:19.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:19.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.943][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:19.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:19.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:19.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:19.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.953][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:19.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:19.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:19.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:19.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:19.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:19.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:19.968][self$createEntryFromContent] Accession numbers: 164994.
biodb.TRACE[2024-12-07 16:03:19.970][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:19.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:19.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.975][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:19.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:19.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.980][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:19.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:19.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:19.984][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:19.986][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:19.987][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:19.993][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:19.994][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:19.995][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:19.996][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:19.998][private$loadEntries] Creating entries from ids [1]: "169251".
biodb.DEBUG[2024-12-07 16:03:19.999][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:03:20.001][cch$loadFileContent] Trying to load 1 files from cache: [1]: "169251".
biodb.TRACE[2024-12-07 16:03:20.003][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:03:20.004][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:03:20.005][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:03:20.007][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:03:20.016][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:03:20.017][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:03:20.020][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:20.022][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:20.023][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:20.029][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:20.031][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:20.032][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:20.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:20.034][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169251".
biodb.DEBUG[2024-12-07 16:03:20.038][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:03:20.039][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:03:20.041][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169251".
biodb.TRACE[2024-12-07 16:03:20.561][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169251).
biodb.DEBUG[2024-12-07 16:03:20.980][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:03:20.982][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/06c85ce8d5c9a410c27ad425a575abe7.content"
biodb.TRACE[2024-12-07 16:03:20.987][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/06c85ce8d5c9a410c27ad425a575abe7.request"
biodb.TRACE[2024-12-07 16:03:20.990][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169251.xml"
biodb.DEBUG[2024-12-07 16:03:20.992][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:03:20.994][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:03:20.995][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:03:20.997][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:20.998][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:20.999][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:21.005][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:21.006][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:21.007][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:21.008][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:21.011][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:21.013][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:21.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.015][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:21.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:21.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.021][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:03:21.023][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:03:21.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.025][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.027][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:03:21.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:03:21.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.032][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:21.033][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:21.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.035][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.037][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:21.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:21.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.042][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:21.043][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:21.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.046][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.047][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:21.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:21.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.052][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:21.053][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:21.055][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.056][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.057][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:21.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:21.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.062][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:21.064][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:21.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.066][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.067][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:03:21.069][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:21.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.071][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.073][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:03:21.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:21.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.078][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:21.079][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:21.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.081][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.083][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:21.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:21.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.088][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:21.089][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:21.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.091][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.093][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:21.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:21.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.098][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:03:21.100][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:03:21.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.102][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.103][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:03:21.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:03:21.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.109][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:03:21.110][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:03:21.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.112][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.114][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:03:21.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:03:21.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.119][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:21.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:21.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.124][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:21.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:21.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.129][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:21.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:21.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:21.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:21.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:21.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:21.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:21.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:21.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:21.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:21.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.154][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:21.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:21.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:21.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:21.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:21.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:21.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:21.169][self$createEntryFromContent] Accession numbers: 169251.
biodb.TRACE[2024-12-07 16:03:21.171][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:21.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:21.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.176][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:21.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:21.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.181][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:21.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:21.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:21.186][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:21.187][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:21.188][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:21.194][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:21.195][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:21.196][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:21.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:21.199][private$loadEntries] Creating entries from ids [1]: "224261".
biodb.DEBUG[2024-12-07 16:03:21.200][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:03:21.202][cch$loadFileContent] Trying to load 1 files from cache: [1]: "224261".
biodb.TRACE[2024-12-07 16:03:21.204][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:03:21.205][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:03:21.206][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:03:21.208][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:03:21.209][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:03:21.210][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:03:21.213][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:21.214][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:21.216][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:21.222][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:21.223][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:21.224][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:21.225][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:21.227][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=224261".
biodb.DEBUG[2024-12-07 16:03:21.230][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:03:21.232][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:03:21.233][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=224261".
biodb.TRACE[2024-12-07 16:03:21.689][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=224261).
biodb.DEBUG[2024-12-07 16:03:22.107][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:03:22.110][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7ba99c29fa5d3888a543698650c3997e.content"
biodb.TRACE[2024-12-07 16:03:22.114][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7ba99c29fa5d3888a543698650c3997e.request"
biodb.TRACE[2024-12-07 16:03:22.117][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/224261.xml"
biodb.DEBUG[2024-12-07 16:03:22.119][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:03:22.121][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:03:22.122][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:03:22.124][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:22.125][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:22.126][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:22.132][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:22.134][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:22.135][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:22.136][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:22.138][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:22.140][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:22.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.142][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:22.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:22.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.148][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:03:22.150][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:03:22.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.152][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.153][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:03:22.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:03:22.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.158][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:22.160][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:22.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.162][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.164][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:22.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:22.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.168][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:22.170][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:22.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.172][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.174][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:22.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:22.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.178][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:22.180][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:22.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.182][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.183][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:22.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:22.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.188][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:22.190][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:22.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.192][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.193][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:03:22.195][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:22.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.197][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.198][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:03:22.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:22.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.203][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:22.205][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:22.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.207][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.208][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:22.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:22.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.213][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:22.215][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:22.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.217][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.219][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:22.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:22.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.224][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:03:22.226][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:03:22.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.228][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.229][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:03:22.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:03:22.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.234][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:03:22.236][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:03:22.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.238][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.239][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:03:22.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:03:22.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.245][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:22.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:22.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.259][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:22.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:22.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:22.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:22.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.269][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:22.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:22.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:22.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:22.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:22.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:22.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:22.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:22.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:22.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:22.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:22.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:22.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.298][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:22.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:22.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:22.303][self$createEntryFromContent] Accession numbers: 224261.
biodb.TRACE[2024-12-07 16:03:22.304][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:22.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:22.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.309][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:22.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:22.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.314][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:22.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:22.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:22.320][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:03:22.324][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:03:22.325][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:03:22.327][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-12-07 16:03:22.750][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-12-07 16:03:23.164][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:03:23.166][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content"
biodb.TRACE[2024-12-07 16:03:23.171][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.request"
biodb.DEBUG[2024-12-07 16:03:23.175][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:23.176][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:23.177][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:23.184][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:23.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:23.186][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:23.187][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:23.188][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:23.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:23.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.194][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:23.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:23.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.199][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:23.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:23.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:23.204][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:23.205][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:23.206][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:23.212][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:23.213][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:23.215][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:23.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:23.217][private$loadEntries] Creating entries from ids [1]: "71954".
biodb.DEBUG[2024-12-07 16:03:23.218][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:03:23.220][cch$loadFileContent] Trying to load 1 files from cache: [1]: "71954".
biodb.TRACE[2024-12-07 16:03:23.222][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:03:23.223][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:03:23.224][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:03:23.226][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:03:23.227][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:03:23.228][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:03:23.231][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:23.232][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:23.234][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:23.240][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:23.241][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:23.242][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:23.243][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:23.245][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71954".
biodb.DEBUG[2024-12-07 16:03:23.249][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:03:23.250][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:03:23.252][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71954".
biodb.TRACE[2024-12-07 16:03:23.694][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71954).
biodb.DEBUG[2024-12-07 16:03:24.111][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:03:24.114][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58f24f0de3d9b6c69a2b349522c5c9b3.content"
biodb.TRACE[2024-12-07 16:03:24.118][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58f24f0de3d9b6c69a2b349522c5c9b3.request"
biodb.TRACE[2024-12-07 16:03:24.122][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/71954.xml"
biodb.DEBUG[2024-12-07 16:03:24.124][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:03:24.125][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:03:24.127][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:03:24.129][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:24.130][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:24.131][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:24.137][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:24.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:24.139][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:24.141][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:24.143][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:24.145][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:24.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.147][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:24.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:24.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.154][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:03:24.155][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:03:24.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.158][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.159][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:03:24.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:03:24.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.164][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:24.166][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:24.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.168][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.170][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:24.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:24.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.175][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:24.176][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:24.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.178][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.180][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:24.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:24.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.185][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:24.186][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:24.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.189][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.190][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:24.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:24.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.195][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:24.197][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:24.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.199][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.201][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:03:24.202][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:24.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.204][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.206][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:03:24.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:24.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.211][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:24.212][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:24.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.215][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.216][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:24.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:24.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.222][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:24.223][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:24.224][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.225][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.227][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:24.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:24.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.232][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:03:24.234][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:03:24.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.236][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.238][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:03:24.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:03:24.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.243][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:03:24.244][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:03:24.245][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.246][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.248][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:03:24.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:03:24.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.253][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:24.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:24.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.258][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:24.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:24.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:24.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:24.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:24.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:24.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:24.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:24.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:24.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:24.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:24.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:24.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:24.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:24.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:24.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:24.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.298][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:24.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:24.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:24.303][self$createEntryFromContent] Accession numbers: 71954.
biodb.TRACE[2024-12-07 16:03:24.304][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:24.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:24.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.309][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:24.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:24.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.314][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:24.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:24.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:24.320][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:24.321][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:24.322][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:24.328][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:24.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:24.331][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:24.332][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:24.334][private$loadEntries] Creating entries from ids [1]: "197612".
biodb.DEBUG[2024-12-07 16:03:24.335][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:03:24.337][cch$loadFileContent] Trying to load 1 files from cache: [1]: "197612".
biodb.TRACE[2024-12-07 16:03:24.339][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:03:24.340][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:03:24.342][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:03:24.343][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:03:24.344][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:03:24.345][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:03:24.348][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:24.350][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:24.351][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:24.357][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:24.358][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:24.359][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:24.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:24.362][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=197612".
biodb.DEBUG[2024-12-07 16:03:24.366][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:03:24.367][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:03:24.369][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=197612".
biodb.TRACE[2024-12-07 16:03:24.814][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=197612).
biodb.DEBUG[2024-12-07 16:03:25.237][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:03:25.244][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d602b140c80212c04a1a2ba98ef7dc4f.content"
biodb.TRACE[2024-12-07 16:03:25.256][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d602b140c80212c04a1a2ba98ef7dc4f.request"
biodb.TRACE[2024-12-07 16:03:25.260][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/197612.xml"
biodb.DEBUG[2024-12-07 16:03:25.261][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:03:25.263][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:03:25.264][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:03:25.266][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:25.267][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:25.268][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:25.275][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:25.276][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:25.277][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:25.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:25.281][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:25.282][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:25.283][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.284][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:25.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:25.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.291][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:03:25.292][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:03:25.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.294][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.296][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:03:25.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:03:25.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.301][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:25.302][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:25.303][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.304][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.306][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:25.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:25.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.311][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:25.312][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:25.313][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.314][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.316][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:25.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:25.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.321][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:25.322][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:25.323][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.324][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.326][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:25.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:25.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.331][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:25.332][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:25.333][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.334][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.336][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:03:25.337][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:25.338][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.339][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.341][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:03:25.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:25.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.346][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:25.347][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:25.348][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.349][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.351][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:25.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:25.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.355][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:25.357][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:25.358][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.359][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.361][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:25.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:25.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.366][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:03:25.367][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:03:25.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.369][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.371][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:03:25.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:03:25.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.375][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:03:25.377][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:03:25.378][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.379][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.380][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:03:25.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:03:25.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.385][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.390][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:25.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:25.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.400][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:25.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:25.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:25.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:25.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:25.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:25.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:25.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:25.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:25.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:25.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:25.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:25.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:25.434][self$createEntryFromContent] Accession numbers: 197612.
biodb.TRACE[2024-12-07 16:03:25.435][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:25.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:25.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.440][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:25.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:25.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.445][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:25.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:25.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:25.450][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:03:25.452][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:25.453][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:25.454][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:25.460][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:25.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:25.463][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:25.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:25.466][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.471][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.476][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:25.477][private$selectFields]
biodb.TRACE[2024-12-07 16:03:25.478][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:25.479][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:25.481][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:25.482][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.483][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.486][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.487][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.488][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.489][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.490][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.492][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:25.493][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:25.494][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.495][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.497][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.498][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.499][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:03:25.500][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.505][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.510][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.516][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-12-07 16:03:25.517][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:25.518][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:25.519][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:25.526][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:25.527][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:25.528][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:25.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:25.531][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.536][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.541][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:25.542][private$selectFields]
biodb.TRACE[2024-12-07 16:03:25.543][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:25.544][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:25.545][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:25.547][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.548][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.549][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.550][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.552][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.553][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.554][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.556][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.557][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:25.558][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:25.559][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.561][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.563][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.564][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:03:25.565][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.570][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.575][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.581][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2024-12-07 16:03:25.582][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:25.583][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:25.584][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:25.591][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:25.592][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:25.593][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:25.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:25.595][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.600][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.605][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:25.607][private$selectFields]
biodb.TRACE[2024-12-07 16:03:25.608][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:25.609][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:25.610][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:25.611][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.613][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.615][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.616][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.618][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.620][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.621][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:25.622][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:25.624][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.625][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.626][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.627][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.629][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:03:25.630][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.635][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.640][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.645][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2024-12-07 16:03:25.647][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:03:25.648][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-12-07 16:03:25.658][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:25.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:25.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.664][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:25.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:25.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.669][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:25.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:25.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.679][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:25.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:25.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.684][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:25.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:25.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.689][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:25.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:25.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.694][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:25.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:25.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.699][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:25.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:25.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.704][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:25.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:25.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.709][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:25.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:25.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.714][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:25.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:25.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.719][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:25.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:25.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:25.797][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:25.798][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:25.800][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:25.806][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:25.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:25.808][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:25.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:25.813][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:03:25.817][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:03:25.819][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-12-07 16:03:25.820][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:25.822][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-12-07 16:03:25.826][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:03:25.830][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:03:25.831][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-12-07 16:03:25.833][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:25.835][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-12-07 16:03:25.838][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:25.839][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:25.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:25.846][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:25.847][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:25.848][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:25.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:25.851][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:25.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:25.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.856][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:25.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:25.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.861][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:25.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:25.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:25.866][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:25.867][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:25.868][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:25.874][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:25.875][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:25.876][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:25.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:25.879][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:25.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:25.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.884][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:25.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:25.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.888][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:25.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:25.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:25.893][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:25.894][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:25.896][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:25.902][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:25.903][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:25.904][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:25.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:25.906][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:25.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:25.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.911][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:25.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:25.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.916][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:25.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:25.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:25.921][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:03:25.923][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:25.924][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:25.925][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:25.932][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:25.933][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:25.934][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:25.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:25.937][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.941][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.947][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:25.948][private$selectFields]
biodb.TRACE[2024-12-07 16:03:25.949][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:25.950][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:25.951][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:25.953][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.954][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.956][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.958][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.959][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.961][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.962][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:25.964][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:25.965][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.966][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.969][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.970][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:03:25.971][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.976][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.981][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:25.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.987][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-12-07 16:03:25.988][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:25.989][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:25.990][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:25.996][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:25.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:25.998][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:26.000][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:26.017][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:26.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:26.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.022][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:26.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:26.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.056][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:26.057][private$selectFields]
biodb.TRACE[2024-12-07 16:03:26.059][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:26.060][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:26.061][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:26.062][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:26.064][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:26.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.066][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.067][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:26.069][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:26.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.071][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.072][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:26.092][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:26.093][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:26.094][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:26.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.097][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.098][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:03:26.099][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:26.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:26.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.104][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:26.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:26.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.109][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:26.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:26.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.114][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-12-07 16:03:26.116][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:26.117][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:26.118][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:26.124][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:26.125][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:26.127][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:26.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:26.129][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:26.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:26.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:26.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:26.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.139][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:26.140][private$selectFields]
biodb.TRACE[2024-12-07 16:03:26.141][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:26.142][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:26.144][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:26.145][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:26.146][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:26.147][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.148][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.150][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:26.151][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:26.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.153][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.155][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:26.156][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:26.157][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:26.158][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:26.159][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.161][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.162][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:03:26.163][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:26.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:26.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.168][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:26.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:26.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.173][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:26.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:26.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.178][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-12-07 16:03:26.180][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:03:26.181][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:03:26.183][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:26.184][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:26.185][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:26.192][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:26.193][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:26.194][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:26.195][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:26.199][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:03:26.203][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:03:26.204][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:03:26.207][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-12-07 16:03:26.632][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-12-07 16:03:27.048][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:03:27.051][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content"
biodb.TRACE[2024-12-07 16:03:27.056][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.request"
biodb.DEBUG[2024-12-07 16:03:27.059][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:27.061][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:27.062][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:27.068][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:27.069][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:27.070][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:27.072][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:27.073][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:27.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:27.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:27.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:27.078][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:27.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:27.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:27.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:27.083][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:27.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:27.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:27.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:27.088][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:27.089][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:27.090][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:27.097][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:27.098][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:27.099][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:27.100][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:27.102][private$loadEntries] Creating entries from ids [1]: "91601".
biodb.DEBUG[2024-12-07 16:03:27.103][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:03:27.105][cch$loadFileContent] Trying to load 1 files from cache: [1]: "91601".
biodb.TRACE[2024-12-07 16:03:27.106][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:03:27.108][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:03:27.109][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:03:27.110][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:03:27.112][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:03:27.113][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:03:27.116][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:27.117][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:27.118][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:27.125][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:27.126][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:27.127][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:27.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:27.130][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=91601".
biodb.DEBUG[2024-12-07 16:03:27.133][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:03:27.135][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:03:27.137][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=91601".
biodb.TRACE[2024-12-07 16:03:27.570][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=91601).
biodb.DEBUG[2024-12-07 16:03:27.988][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:03:27.991][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/aa7bc0b3048e5fb322307698a3f56fa6.content"
biodb.TRACE[2024-12-07 16:03:27.995][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/aa7bc0b3048e5fb322307698a3f56fa6.request"
biodb.TRACE[2024-12-07 16:03:27.998][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/91601.xml"
biodb.DEBUG[2024-12-07 16:03:28.000][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:03:28.002][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:03:28.003][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:03:28.005][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:28.006][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:28.007][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:28.014][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:28.015][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:28.016][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:28.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:28.020][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:28.021][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:28.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.024][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:28.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:28.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.030][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:03:28.031][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:03:28.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.034][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.035][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:03:28.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:03:28.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.040][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:28.042][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:28.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.044][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.046][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:28.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:28.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.051][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:28.052][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:28.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.055][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.056][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:28.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:28.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.061][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:28.063][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:28.064][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.065][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.067][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:28.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:28.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.072][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:28.073][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:28.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.075][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.077][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:03:28.078][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:28.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.081][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.082][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:03:28.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:28.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.087][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:28.088][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:28.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.091][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.092][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:28.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:28.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.097][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:28.099][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:28.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.101][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.103][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:28.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:28.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.108][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:03:28.109][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:03:28.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.112][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.113][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:03:28.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:03:28.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.118][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:03:28.120][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:03:28.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.122][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.124][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:03:28.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:03:28.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.129][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:28.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:28.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:28.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:28.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:28.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:28.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.144][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:28.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:28.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:28.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:28.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:28.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:28.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:28.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:28.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:28.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:28.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:28.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:28.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:28.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:28.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:28.178][self$createEntryFromContent] Accession numbers: 91601.
biodb.TRACE[2024-12-07 16:03:28.179][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:28.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:28.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.184][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:28.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:28.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.188][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:28.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:28.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:28.203][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:28.204][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:28.205][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:28.211][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:28.213][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:28.214][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:28.215][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:28.216][private$loadEntries] Creating entries from ids [1]: "95147".
biodb.DEBUG[2024-12-07 16:03:28.217][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:03:28.219][cch$loadFileContent] Trying to load 1 files from cache: [1]: "95147".
biodb.TRACE[2024-12-07 16:03:28.221][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:03:28.222][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:03:28.223][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:03:28.224][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:03:28.226][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:03:28.227][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:03:28.230][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:28.231][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:28.232][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:28.238][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:28.239][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:28.240][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:28.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:28.242][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=95147".
biodb.DEBUG[2024-12-07 16:03:28.246][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:03:28.247][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:03:28.249][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=95147".
biodb.TRACE[2024-12-07 16:03:28.680][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=95147).
biodb.DEBUG[2024-12-07 16:03:29.095][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:03:29.098][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5dbc153d74635342b8ea0e83790c39e.content"
biodb.TRACE[2024-12-07 16:03:29.102][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5dbc153d74635342b8ea0e83790c39e.request"
biodb.TRACE[2024-12-07 16:03:29.105][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/95147.xml"
biodb.DEBUG[2024-12-07 16:03:29.107][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:03:29.109][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:03:29.110][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:03:29.112][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:29.113][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:29.114][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:29.121][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:29.122][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:29.123][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:29.124][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:29.127][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:29.128][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:29.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.130][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.132][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:29.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:29.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.137][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:03:29.138][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:03:29.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.140][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.142][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:03:29.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:03:29.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.147][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:29.148][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:29.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.150][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.152][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:29.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:29.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.157][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:29.158][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:29.159][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.161][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.162][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:29.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:29.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.167][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:29.168][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:29.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.171][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.172][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:29.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:29.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.177][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:29.179][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:29.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.181][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.182][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:03:29.184][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:29.185][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.186][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.188][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:03:29.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:29.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.193][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:29.194][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:29.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.197][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.198][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:29.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:29.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.203][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:29.205][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:29.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.207][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.209][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:29.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:29.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.214][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:03:29.215][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:03:29.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.218][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.219][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:03:29.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:03:29.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.224][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:03:29.225][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:03:29.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.228][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.229][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:03:29.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:03:29.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.234][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:29.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:29.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.239][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:29.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:29.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:29.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:29.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.249][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:29.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:29.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.254][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:29.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:29.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.259][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:29.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:29.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:29.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:29.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:29.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:29.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:29.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:29.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:29.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:29.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:29.284][self$createEntryFromContent] Accession numbers: 95147.
biodb.TRACE[2024-12-07 16:03:29.286][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:29.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:29.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.290][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:29.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:29.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.295][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:29.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:29.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:29.301][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:03:29.302][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:29.304][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:29.305][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:29.311][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:29.312][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:29.313][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:29.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:29.316][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:29.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:29.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.321][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:29.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:29.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.326][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:29.327][private$selectFields]
biodb.TRACE[2024-12-07 16:03:29.328][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:29.329][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:29.331][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:29.332][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:29.333][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:29.334][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.335][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.337][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:29.338][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:29.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.340][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.342][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:29.343][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:29.344][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:29.345][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:29.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.348][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.349][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:03:29.350][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:29.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:29.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.355][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:29.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:29.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.361][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:29.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:29.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.366][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-12-07 16:03:29.368][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:29.369][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:29.370][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:29.376][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:29.378][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:29.379][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:29.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:29.381][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:29.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:29.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.386][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:29.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:29.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.391][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:29.393][private$selectFields]
biodb.TRACE[2024-12-07 16:03:29.394][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:29.395][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:29.396][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:29.398][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:29.399][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:29.400][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.401][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.403][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:29.404][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:29.405][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.406][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.408][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:29.409][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:29.410][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:29.411][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:29.413][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.414][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.415][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:03:29.416][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:29.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:29.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.421][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:29.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:29.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.426][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:29.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:29.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.432][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2024-12-07 16:03:29.433][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:29.434][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:29.436][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:29.442][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:29.443][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:29.444][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:29.445][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:29.447][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:29.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:29.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.452][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:29.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:29.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.457][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:29.458][private$selectFields]
biodb.TRACE[2024-12-07 16:03:29.459][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:29.461][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:29.462][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:29.463][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:29.464][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:29.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.479][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.481][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:29.482][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:29.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.485][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.486][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:29.487][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:29.489][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:29.490][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:29.491][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.492][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.493][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:03:29.495][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:29.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:29.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.500][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:29.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:29.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.505][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:29.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:29.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.510][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2024-12-07 16:03:29.511][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:03:29.513][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:03:29.515][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:29.516][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:29.517][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:29.523][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:29.524][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:29.526][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:29.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:29.530][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:03:29.534][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:03:29.535][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:03:29.538][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-12-07 16:03:29.971][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-12-07 16:03:30.391][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:03:30.394][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content"
biodb.TRACE[2024-12-07 16:03:30.399][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.request"
biodb.DEBUG[2024-12-07 16:03:30.404][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:30.405][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:30.406][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:30.412][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:30.413][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:30.414][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:30.416][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:30.417][private$loadEntries] Creating entries from ids [1]: "636".
biodb.DEBUG[2024-12-07 16:03:30.418][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:03:30.420][cch$loadFileContent] Trying to load 1 files from cache: [1]: "636".
biodb.TRACE[2024-12-07 16:03:30.422][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:03:30.423][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:03:30.424][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:03:30.426][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:03:30.427][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:03:30.428][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:03:30.431][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:30.432][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:30.433][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:30.440][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:30.441][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:30.442][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:30.443][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:30.444][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=636".
biodb.DEBUG[2024-12-07 16:03:30.448][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:03:30.449][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:03:30.451][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=636".
biodb.TRACE[2024-12-07 16:03:30.888][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=636).
biodb.DEBUG[2024-12-07 16:03:31.304][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:03:31.306][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ccb008951a89970d7f0e2dfe6ae3860d.content"
biodb.TRACE[2024-12-07 16:03:31.311][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ccb008951a89970d7f0e2dfe6ae3860d.request"
biodb.TRACE[2024-12-07 16:03:31.314][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/636.xml"
biodb.DEBUG[2024-12-07 16:03:31.316][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:03:31.317][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:03:31.319][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:03:31.321][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:31.322][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:31.323][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:31.329][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:31.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:31.331][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:31.332][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:31.335][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:31.336][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:31.338][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.339][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:31.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:31.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.345][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:03:31.347][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:03:31.348][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.349][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.351][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:03:31.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:03:31.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.356][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:31.357][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:31.358][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.359][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.361][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:31.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:31.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.366][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:31.367][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:31.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.370][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.371][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:31.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:31.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.376][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:31.378][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:31.379][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.380][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.382][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:31.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:31.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.387][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:31.388][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:31.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.390][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.392][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:31.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:31.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.397][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:03:31.398][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:31.400][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.401][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.402][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:03:31.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:31.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.407][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:31.409][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:31.410][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.411][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.413][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:31.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:31.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.418][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:31.419][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:31.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.421][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.423][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:31.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:31.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.428][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:03:31.430][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:03:31.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.432][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.434][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:03:31.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:03:31.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.439][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:03:31.440][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:03:31.441][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.443][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.444][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:03:31.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:03:31.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.449][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:31.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:31.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.454][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:31.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:31.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:31.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:31.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.465][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:31.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:31.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:31.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:31.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:31.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:31.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:31.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:31.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.485][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:31.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:31.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:31.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:31.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.495][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:31.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:31.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:31.500][self$createEntryFromContent] Accession numbers: 636.
biodb.TRACE[2024-12-07 16:03:31.502][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:31.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:31.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.507][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:31.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:31.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.512][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:31.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:31.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:31.517][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:31.518][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:31.519][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:31.526][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:31.527][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:31.528][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:31.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:31.531][private$loadEntries] Creating entries from ids [1]: "64199".
biodb.DEBUG[2024-12-07 16:03:31.532][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:03:31.534][cch$loadFileContent] Trying to load 1 files from cache: [1]: "64199".
biodb.TRACE[2024-12-07 16:03:31.535][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:03:31.537][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:03:31.538][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:03:31.540][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:03:31.541][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:03:31.542][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:03:31.545][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:31.546][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:31.548][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:31.554][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:31.555][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:31.556][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:31.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:31.559][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64199".
biodb.DEBUG[2024-12-07 16:03:31.563][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:03:31.564][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:03:31.566][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64199".
biodb.TRACE[2024-12-07 16:03:32.012][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64199).
biodb.DEBUG[2024-12-07 16:03:32.434][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:03:32.437][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a31cc2b07404761abdda19d4ffeaa880.content"
biodb.TRACE[2024-12-07 16:03:32.442][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a31cc2b07404761abdda19d4ffeaa880.request"
biodb.TRACE[2024-12-07 16:03:32.445][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64199.xml"
biodb.DEBUG[2024-12-07 16:03:32.447][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:03:32.449][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:03:32.450][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:03:32.452][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:32.453][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:32.455][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:32.461][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:32.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:32.463][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:32.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:32.467][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:32.469][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:32.470][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.471][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:32.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:32.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.478][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:03:32.484][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:03:32.494][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.496][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.498][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:03:32.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:03:32.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.503][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:32.504][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:32.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.507][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.508][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:32.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:32.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.513][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:32.515][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:32.516][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.517][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.519][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:32.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:32.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.524][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:32.525][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:32.526][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.528][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.529][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:32.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:32.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.534][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:32.536][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:32.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.538][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.539][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:03:32.541][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:32.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.543][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.545][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:03:32.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:32.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.550][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:32.551][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:32.552][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.553][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.555][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:32.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:32.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.560][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:32.561][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:32.563][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.564][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.565][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:32.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:32.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.570][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:03:32.572][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:03:32.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.574][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.576][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:03:32.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:03:32.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.581][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:03:32.582][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:03:32.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.584][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.586][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:03:32.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:03:32.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.591][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:32.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:32.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.596][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:32.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:32.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:32.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:32.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.606][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:32.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:32.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:32.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:32.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:32.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:32.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.621][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:32.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:32.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:32.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:32.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:32.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:32.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:32.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:32.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:32.642][self$createEntryFromContent] Accession numbers: 64199.
biodb.TRACE[2024-12-07 16:03:32.643][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:32.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:32.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.648][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:32.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:32.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.653][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:32.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:32.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:32.658][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:32.659][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:32.660][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:32.667][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:32.668][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:32.669][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:32.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:32.672][private$loadEntries] Creating entries from ids [1]: "65648".
biodb.DEBUG[2024-12-07 16:03:32.673][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:03:32.675][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65648".
biodb.TRACE[2024-12-07 16:03:32.677][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:03:32.678][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:03:32.680][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:03:32.681][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:03:32.682][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:03:32.683][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:03:32.687][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:32.688][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:32.689][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:32.695][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:32.697][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:32.698][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:32.699][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:32.700][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65648".
biodb.DEBUG[2024-12-07 16:03:32.704][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:03:32.705][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:03:32.707][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65648".
biodb.TRACE[2024-12-07 16:03:33.147][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65648).
biodb.DEBUG[2024-12-07 16:03:33.562][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:03:33.565][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4176d017d73a3b7cdd77f889aa9b1b1d.content"
biodb.TRACE[2024-12-07 16:03:33.569][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4176d017d73a3b7cdd77f889aa9b1b1d.request"
biodb.TRACE[2024-12-07 16:03:33.573][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65648.xml"
biodb.DEBUG[2024-12-07 16:03:33.575][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:03:33.576][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:03:33.578][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:03:33.579][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:33.581][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:33.582][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:33.588][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:33.589][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:33.590][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:33.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:33.594][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:33.595][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:33.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.598][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:33.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:33.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.604][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:03:33.605][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:03:33.607][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.608][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.609][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:03:33.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:03:33.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.614][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:33.616][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:33.617][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.618][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.619][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:33.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:33.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.625][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:33.626][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:33.627][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.628][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.630][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:33.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:33.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.635][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:33.636][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:33.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.638][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.640][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:33.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:33.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.645][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:33.646][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:33.647][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.649][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.650][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:03:33.651][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:33.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.654][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.655][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:03:33.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:33.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.660][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:33.662][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:33.663][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.664][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.666][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:33.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:33.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.671][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:33.672][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:33.674][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.675][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.676][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:33.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:33.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.681][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:03:33.683][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:03:33.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.685][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.687][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:03:33.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:03:33.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.692][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:03:33.693][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:03:33.694][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.695][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.697][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:03:33.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:03:33.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.702][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:33.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:33.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.707][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:33.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:33.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:33.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:33.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.716][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:33.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:33.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:33.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:33.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:33.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:33.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:33.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:33.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:33.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:33.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:33.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:33.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:33.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:33.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:33.751][self$createEntryFromContent] Accession numbers: 65648.
biodb.TRACE[2024-12-07 16:03:33.752][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:33.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:33.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.757][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:33.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:33.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.762][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:33.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:33.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:33.767][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:03:33.769][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:33.770][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:33.771][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:33.785][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:33.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:33.788][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:33.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:33.790][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:33.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:33.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.795][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:33.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:33.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.800][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:33.801][private$selectFields]
biodb.TRACE[2024-12-07 16:03:33.802][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:33.803][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:33.804][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:33.806][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:33.807][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:33.808][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.809][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.810][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:33.812][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:33.813][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.814][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.815][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:33.816][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:33.818][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:33.819][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:33.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.821][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.822][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:03:33.824][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:33.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:33.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.828][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:33.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:33.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.833][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:33.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:33.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.839][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2024-12-07 16:03:33.840][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:33.841][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:33.842][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:33.848][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:33.849][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:33.850][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:33.851][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:33.853][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:33.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:33.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.858][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:33.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:33.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.862][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:33.864][private$selectFields]
biodb.TRACE[2024-12-07 16:03:33.865][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:33.866][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:33.867][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:33.868][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:33.869][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:33.871][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.872][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.873][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:33.874][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:33.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.877][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.878][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:33.879][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:33.880][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:33.882][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:33.883][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.884][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.885][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:03:33.886][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:33.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:33.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.891][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:33.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:33.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.896][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:33.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:33.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.901][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2024-12-07 16:03:33.903][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:33.904][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:33.905][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:33.911][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:33.912][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:33.913][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:33.914][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:33.916][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:33.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:33.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.921][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:33.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:33.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.926][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:33.927][private$selectFields]
biodb.TRACE[2024-12-07 16:03:33.928][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:33.929][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:33.930][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:33.932][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:33.933][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:33.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.935][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.936][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:33.938][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:33.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.940][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.941][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:33.943][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:33.944][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:33.945][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:33.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.947][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.949][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:03:33.950][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:33.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:33.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:33.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:33.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.960][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:33.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:33.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.965][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2024-12-07 16:03:33.966][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:03:33.967][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-12-07 16:03:33.978][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-12-07 16:03:33.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-12-07 16:03:33.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.983][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-12-07 16:03:33.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-12-07 16:03:33.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.988][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-12-07 16:03:33.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-12-07 16:03:33.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-12-07 16:03:33.998][biodb::testThat]
biodb.INFO [2024-12-07 16:03:33.999][biodb::testThat] Running test function test_annotateMzValues_ppm_tol (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2024-12-07 16:03:34.000][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:03:34.001][biodb::testThat]
biodb.TRACE[2024-12-07 16:03:34.005][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-07 16:03:34.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-07 16:03:34.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.010][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-07 16:03:34.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-07 16:03:34.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.015][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-07 16:03:34.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-07 16:03:34.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.020][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.025][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.030][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.035][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.040][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.045][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.050][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.055][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.060][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.065][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.070][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.075][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:34.083][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:34.084][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:34.085][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:34.091][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:34.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:34.094][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:34.095][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:34.098][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:03:34.103][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:03:34.105][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-12-07 16:03:34.106][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:34.108][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-12-07 16:03:34.111][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:34.112][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:34.113][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:34.119][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:34.120][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:34.121][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:34.122][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:34.124][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.129][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.134][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:34.140][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:03:34.144][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:03:34.145][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-12-07 16:03:34.147][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:34.149][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-12-07 16:03:34.152][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:34.153][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:34.154][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:34.160][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:34.161][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:34.162][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:34.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:34.165][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.175][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:34.180][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:34.181][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:34.182][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:34.189][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:34.190][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:34.191][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:34.192][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:34.194][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.199][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.204][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:34.214][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:03:34.216][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:34.217][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:34.218][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:34.225][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:34.226][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:34.227][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:34.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:34.229][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.234][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.239][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:34.240][private$selectFields]
biodb.TRACE[2024-12-07 16:03:34.241][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:34.242][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:34.244][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:34.245][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.246][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.248][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.250][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.251][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.253][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.254][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:34.256][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:34.257][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.258][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.259][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.260][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.262][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:03:34.263][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.273][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.278][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2024-12-07 16:03:34.279][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:34.280][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:34.281][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:34.287][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:34.288][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:34.289][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:34.291][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:34.292][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.297][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.302][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:34.303][private$selectFields]
biodb.TRACE[2024-12-07 16:03:34.304][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:34.305][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:34.306][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:34.307][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.309][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.310][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.311][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.312][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.314][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.315][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.316][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.317][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:34.318][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:34.319][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.321][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.322][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.323][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.324][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:03:34.325][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.330][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.335][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.341][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-12-07 16:03:34.342][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:34.343][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:34.344][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:34.350][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:34.351][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:34.352][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:34.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:34.355][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.360][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.365][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:34.366][private$selectFields]
biodb.TRACE[2024-12-07 16:03:34.367][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:34.368][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:34.370][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:34.371][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.372][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.373][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.375][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.376][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.377][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.378][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.379][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.381][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:34.382][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:34.383][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.384][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.386][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.387][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.388][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:03:34.389][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.394][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.399][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.405][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2024-12-07 16:03:34.406][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:03:34.407][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:03:34.410][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:34.411][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:34.412][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:34.418][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:34.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:34.420][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:34.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:34.425][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:03:34.429][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:03:34.431][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2024-12-07 16:03:34.432][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:34.434][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2024-12-07 16:03:34.437][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:34.438][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:34.439][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:34.445][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:34.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:34.448][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:34.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:34.450][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.455][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.460][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:34.465][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:34.466][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:34.467][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:34.473][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:34.475][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:34.476][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:34.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:34.478][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.483][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.488][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:34.494][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:03:34.498][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:03:34.500][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2024-12-07 16:03:34.501][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:34.503][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2024-12-07 16:03:34.506][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:34.508][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:34.509][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:34.516][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:34.517][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:34.518][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:34.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:34.521][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.526][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.531][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:34.536][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:34.537][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:34.538][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:34.545][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:34.546][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:34.547][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:34.548][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:34.550][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.555][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.560][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:34.565][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:34.566][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:34.567][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:34.573][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:34.574][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:34.575][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:34.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:34.578][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.583][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.588][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:34.593][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:03:34.595][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:34.596][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:34.597][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:34.603][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:34.605][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:34.606][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:34.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:34.608][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.613][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.618][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:34.619][private$selectFields]
biodb.TRACE[2024-12-07 16:03:34.620][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:34.622][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:34.623][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:34.624][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.625][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.626][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.628][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.629][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.630][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.631][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.632][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.634][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:34.635][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:34.636][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.637][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.645][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.647][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:03:34.648][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.653][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.658][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.663][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-12-07 16:03:34.664][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:34.665][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:34.666][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:34.673][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:34.674][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:34.675][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:34.676][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:34.677][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.682][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.687][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:34.688][private$selectFields]
biodb.TRACE[2024-12-07 16:03:34.689][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:34.691][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:34.692][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:34.693][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.694][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.697][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.698][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.699][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.700][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.701][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.703][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:34.704][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:34.705][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.706][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.707][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.708][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.710][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:03:34.711][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.716][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.720][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.725][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2024-12-07 16:03:34.727][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:34.728][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:34.729][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:34.735][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:34.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:34.737][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:34.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:34.739][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.744][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.749][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:34.750][private$selectFields]
biodb.TRACE[2024-12-07 16:03:34.751][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:34.752][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:34.753][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:34.755][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.756][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.757][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.758][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.759][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.761][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.762][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.763][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.764][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:34.765][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:34.766][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.768][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.770][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.771][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:03:34.772][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.777][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.782][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:34.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.787][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2024-12-07 16:03:34.788][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:03:34.790][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:03:34.792][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:34.793][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:34.794][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:34.800][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:34.801][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:34.802][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:34.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:34.807][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:03:34.811][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:03:34.812][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2024-12-07 16:03:34.814][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:34.815][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2024-12-07 16:03:34.818][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:34.819][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:34.820][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:34.826][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:34.828][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:34.829][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:34.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:34.831][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.836][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.841][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:34.846][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:34.847][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:34.848][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:34.854][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:34.855][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:34.856][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:34.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:34.859][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.863][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.868][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:34.873][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:34.875][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:34.876][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:34.882][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:34.883][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:34.884][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:34.885][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:34.887][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.891][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.896][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:34.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:34.902][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:03:34.907][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:03:34.908][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:03:34.910][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-12-07 16:03:35.376][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-12-07 16:03:35.922][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:03:35.924][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dd9d19fb78fcc7453eff2e9dd7ba5702.content"
biodb.TRACE[2024-12-07 16:03:35.930][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dd9d19fb78fcc7453eff2e9dd7ba5702.request"
biodb.DEBUG[2024-12-07 16:03:35.938][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:35.939][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:35.940][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:35.946][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:35.947][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:35.948][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:35.949][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:35.951][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:35.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:35.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.956][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:35.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:35.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.960][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:35.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:35.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:35.965][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:35.966][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:35.967][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:35.973][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:35.975][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:35.976][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:35.977][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:35.978][private$loadEntries] Creating entries from ids [1]: "3017".
biodb.DEBUG[2024-12-07 16:03:35.979][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:03:35.981][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3017".
biodb.TRACE[2024-12-07 16:03:35.983][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:03:35.984][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:03:35.985][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:03:35.987][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:03:35.988][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:03:35.989][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:03:35.992][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:35.993][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:35.994][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:36.001][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:36.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:36.003][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:36.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:36.006][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3017".
biodb.DEBUG[2024-12-07 16:03:36.009][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:03:36.010][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:03:36.012][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3017".
biodb.TRACE[2024-12-07 16:03:36.460][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3017).
biodb.DEBUG[2024-12-07 16:03:36.879][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:03:36.882][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a0d2dadbafdef2154bb32b0db7e287ac.content"
biodb.TRACE[2024-12-07 16:03:36.886][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a0d2dadbafdef2154bb32b0db7e287ac.request"
biodb.TRACE[2024-12-07 16:03:36.889][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3017.xml"
biodb.DEBUG[2024-12-07 16:03:36.891][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:03:36.892][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:03:36.894][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:03:36.896][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:36.897][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:36.898][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:36.904][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:36.905][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:36.906][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:36.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:36.911][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:36.912][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:36.913][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.914][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.916][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:36.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:36.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.921][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:03:36.922][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:03:36.923][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.925][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.926][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:03:36.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:03:36.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.931][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:36.932][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:36.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.935][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.947][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:36.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:36.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.953][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:36.954][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:36.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.957][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.958][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:36.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:36.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.963][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:36.965][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:36.966][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.967][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.968][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:36.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:36.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.973][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:36.975][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:36.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.977][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.978][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:36.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:36.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.983][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:03:36.985][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:36.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.987][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.988][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:03:36.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:36.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.993][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:36.995][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:36.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.997][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.998][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:37.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:37.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.003][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:37.005][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:37.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.007][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.009][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:37.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:37.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.014][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:03:37.015][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:03:37.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.017][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.019][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:03:37.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:03:37.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.024][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:03:37.025][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:03:37.026][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.027][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.029][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:03:37.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:03:37.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.034][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:37.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:37.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.039][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:37.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:37.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:37.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:37.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.048][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:37.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:37.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:37.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:37.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:37.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:37.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:37.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:37.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:37.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:37.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.073][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:37.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:37.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:37.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:37.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:37.082][self$createEntryFromContent] Accession numbers: 3017.
biodb.TRACE[2024-12-07 16:03:37.084][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:37.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:37.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.089][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:37.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:37.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.093][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:37.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:37.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:37.098][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:37.099][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:37.100][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:37.107][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:37.108][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:37.109][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:37.110][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:37.111][private$loadEntries] Creating entries from ids [1]: "3510".
biodb.DEBUG[2024-12-07 16:03:37.112][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:03:37.114][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3510".
biodb.TRACE[2024-12-07 16:03:37.116][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:03:37.117][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:03:37.119][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:03:37.120][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:03:37.121][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:03:37.122][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:03:37.125][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:37.126][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:37.128][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:37.134][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:37.135][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:37.136][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:37.137][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:37.139][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3510".
biodb.DEBUG[2024-12-07 16:03:37.142][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:03:37.143][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:03:37.145][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3510".
biodb.TRACE[2024-12-07 16:03:37.607][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3510).
biodb.DEBUG[2024-12-07 16:03:38.034][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:03:38.036][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58362fa70b44eecb6a87afbf9b6dfd8b.content"
biodb.TRACE[2024-12-07 16:03:38.041][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58362fa70b44eecb6a87afbf9b6dfd8b.request"
biodb.TRACE[2024-12-07 16:03:38.044][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3510.xml"
biodb.DEBUG[2024-12-07 16:03:38.046][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:03:38.048][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:03:38.049][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:03:38.052][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:38.053][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:38.054][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:38.060][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:38.061][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:38.063][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:38.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:38.066][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:38.068][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:38.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.070][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:38.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:38.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.077][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:03:38.078][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:03:38.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.081][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.082][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:03:38.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:03:38.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.088][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:38.089][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:38.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.092][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.094][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:38.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:38.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.099][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:38.100][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:38.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.103][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.105][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:38.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:38.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.110][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:38.111][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:38.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.114][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.115][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:38.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:38.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.121][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:38.122][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:38.123][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.125][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.126][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:38.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:38.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.132][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:03:38.133][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:38.134][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.136][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.137][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:03:38.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:38.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.143][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:38.144][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:38.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.146][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.148][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:38.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:38.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.153][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:38.154][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:38.156][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.157][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.159][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:38.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:38.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.164][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:03:38.165][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:03:38.166][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.167][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.169][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:03:38.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:03:38.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.174][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:03:38.176][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:03:38.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.178][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.179][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:03:38.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:03:38.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.185][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:38.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:38.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.190][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:38.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:38.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:38.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:38.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.199][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:38.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:38.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:38.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:38.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:38.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:38.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:38.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:38.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:38.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:38.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:38.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:38.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:38.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:38.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:38.234][self$createEntryFromContent] Accession numbers: 3510.
biodb.TRACE[2024-12-07 16:03:38.235][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:38.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:38.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.240][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:38.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:38.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.245][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:38.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:38.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:38.250][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:38.251][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:38.252][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:38.267][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:38.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:38.269][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:38.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:38.272][private$loadEntries] Creating entries from ids [1]: "7554".
biodb.DEBUG[2024-12-07 16:03:38.273][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:03:38.275][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7554".
biodb.TRACE[2024-12-07 16:03:38.276][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:03:38.278][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:03:38.279][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:03:38.280][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:03:38.282][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:03:38.283][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:03:38.286][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:38.287][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:38.288][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:38.294][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:38.296][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:38.297][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:38.298][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:38.299][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7554".
biodb.DEBUG[2024-12-07 16:03:38.303][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:03:38.304][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:03:38.306][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7554".
biodb.TRACE[2024-12-07 16:03:38.745][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7554).
biodb.DEBUG[2024-12-07 16:03:39.165][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:03:39.168][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66bd6c2472b2485e58ad424b4505cbea.content"
biodb.TRACE[2024-12-07 16:03:39.172][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66bd6c2472b2485e58ad424b4505cbea.request"
biodb.TRACE[2024-12-07 16:03:39.176][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7554.xml"
biodb.DEBUG[2024-12-07 16:03:39.178][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:03:39.180][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:03:39.181][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:03:39.183][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:39.184][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:39.185][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:39.192][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:39.193][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:39.194][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:39.195][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:39.198][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:39.199][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:39.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.201][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.203][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:39.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:39.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.208][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:03:39.209][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:03:39.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.211][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.213][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:03:39.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:03:39.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.218][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:39.219][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:39.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.221][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.223][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:39.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:39.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.228][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:39.229][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:39.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.231][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.233][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:39.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:39.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.238][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:39.239][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:39.240][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.241][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.243][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:39.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:39.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.248][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:39.249][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:39.250][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.251][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.253][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:39.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:39.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.258][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:03:39.259][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:39.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.261][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.263][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:03:39.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:39.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.268][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.269][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.270][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.272][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.273][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.278][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:39.279][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:39.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.282][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.283][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:39.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:39.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.288][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:03:39.290][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:03:39.291][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.292][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.293][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:03:39.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:03:39.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.298][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:03:39.300][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:03:39.301][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.302][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.304][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:03:39.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:03:39.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.309][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.313][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:39.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:39.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.323][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:39.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:39.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:39.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:39.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:39.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:39.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:39.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:39.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:39.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:39.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:39.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:39.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:39.358][self$createEntryFromContent] Accession numbers: 7554.
biodb.TRACE[2024-12-07 16:03:39.359][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:39.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:39.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.364][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:39.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:39.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.369][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:39.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:39.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:39.374][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:03:39.376][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:39.377][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:39.378][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:39.384][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:39.385][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:39.386][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:39.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:39.389][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.394][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.399][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:39.400][private$selectFields]
biodb.TRACE[2024-12-07 16:03:39.401][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:39.402][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:39.403][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:39.405][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.406][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.407][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.408][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.409][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.411][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.412][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.413][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.414][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:39.416][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:39.417][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.418][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.419][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.420][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.422][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:03:39.423][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.428][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.433][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.438][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-12-07 16:03:39.439][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:39.440][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:39.441][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:39.447][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:39.449][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:39.450][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:39.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:39.452][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.457][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.462][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:39.463][private$selectFields]
biodb.TRACE[2024-12-07 16:03:39.464][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:39.465][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:39.467][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:39.468][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.469][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.470][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.471][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.473][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.474][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.476][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.478][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:39.479][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:39.480][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.481][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.483][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.484][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.485][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:03:39.486][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.491][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.496][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.501][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3017].
biodb.DEBUG[2024-12-07 16:03:39.503][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:39.504][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:39.505][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:39.511][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:39.512][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:39.513][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:39.514][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:39.516][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.521][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.526][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:39.527][private$selectFields]
biodb.TRACE[2024-12-07 16:03:39.528][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:39.529][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:39.530][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:39.531][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.533][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.534][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.535][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.536][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.538][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.547][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.548][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.549][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:39.551][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:39.552][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.553][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.554][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.555][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.557][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:03:39.558][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.563][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.568][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.573][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7554].
biodb.DEBUG[2024-12-07 16:03:39.574][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:03:39.575][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-12-07 16:03:39.585][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.591][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.595][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.600][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.605][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.610][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.615][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.620][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.625][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.630][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.634][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.639][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:39.647][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:39.648][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:39.649][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:39.655][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:39.656][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:39.657][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:39.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:39.661][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:03:39.666][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:03:39.667][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-12-07 16:03:39.669][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:39.670][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-12-07 16:03:39.674][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:03:39.678][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:03:39.680][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-12-07 16:03:39.681][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:39.683][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-12-07 16:03:39.686][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:39.687][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:39.688][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:39.694][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:39.695][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:39.696][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:39.697][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:39.699][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.704][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.709][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:39.714][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:39.715][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:39.716][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:39.722][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:39.724][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:39.725][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:39.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:39.727][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.732][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.737][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:39.742][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:39.743][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:39.744][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:39.750][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:39.752][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:39.753][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:39.754][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:39.755][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.760][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.765][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:39.770][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:03:39.772][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:39.773][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:39.774][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:39.781][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:39.782][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:39.783][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:39.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:39.786][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.790][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.795][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:39.797][private$selectFields]
biodb.TRACE[2024-12-07 16:03:39.798][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:39.799][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:39.800][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:39.801][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.803][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.805][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.806][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.808][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.810][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.811][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:39.812][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:39.814][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.815][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.817][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.819][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:03:39.820][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.825][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.830][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.835][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-12-07 16:03:39.837][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:39.838][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:39.839][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:39.845][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:39.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:39.847][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:39.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:39.850][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.855][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.860][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:39.861][private$selectFields]
biodb.TRACE[2024-12-07 16:03:39.862][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:39.863][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:39.864][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:39.866][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.867][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.868][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.869][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.871][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.872][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.874][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.875][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:39.877][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:39.878][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.879][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.882][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.883][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:03:39.884][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.889][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.894][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.899][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-12-07 16:03:39.901][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:39.902][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:39.903][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:39.909][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:39.910][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:39.911][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:39.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:39.914][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.919][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.924][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:39.925][private$selectFields]
biodb.TRACE[2024-12-07 16:03:39.926][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:39.927][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:39.928][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:39.930][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.931][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.932][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.933][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.935][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.936][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.938][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.940][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:39.941][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:39.942][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.944][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.946][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.947][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:03:39.949][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.954][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.959][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:39.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.964][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-12-07 16:03:39.965][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:03:39.967][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:03:39.974][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:39.976][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:39.977][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:39.983][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:39.984][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:39.985][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:39.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:39.990][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:03:39.994][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:03:39.995][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:03:39.998][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-12-07 16:03:40.424][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-12-07 16:03:40.862][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:03:40.864][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f88afce5e7bcb0842d474b04c0bef37a.content"
biodb.TRACE[2024-12-07 16:03:40.869][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f88afce5e7bcb0842d474b04c0bef37a.request"
biodb.DEBUG[2024-12-07 16:03:40.874][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:40.875][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:40.876][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:40.882][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:40.883][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:40.884][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:40.885][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:40.887][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:40.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:40.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.892][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:40.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:40.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.897][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:40.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:40.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:40.902][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:40.903][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:40.904][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:40.910][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:40.911][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:40.913][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:40.914][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:40.915][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:40.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:40.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.920][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:40.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:40.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.925][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:40.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:40.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:40.930][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:40.931][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:40.932][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:40.939][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:40.940][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:40.941][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:40.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:40.943][private$loadEntries] Creating entries from ids [1]: "27495".
biodb.DEBUG[2024-12-07 16:03:40.945][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:03:40.947][cch$loadFileContent] Trying to load 1 files from cache: [1]: "27495".
biodb.TRACE[2024-12-07 16:03:40.948][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:03:40.949][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:03:40.951][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:03:40.952][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:03:40.953][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:03:40.955][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:03:40.958][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:40.959][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:40.960][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:40.967][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:40.968][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:40.969][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:40.970][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:40.972][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=27495".
biodb.DEBUG[2024-12-07 16:03:40.975][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:03:40.976][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:03:40.978][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=27495".
biodb.TRACE[2024-12-07 16:03:41.445][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=27495).
biodb.DEBUG[2024-12-07 16:03:41.870][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:03:41.873][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/edda5d46cbbeda6cad9b4593b6925e01.content"
biodb.TRACE[2024-12-07 16:03:41.877][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/edda5d46cbbeda6cad9b4593b6925e01.request"
biodb.TRACE[2024-12-07 16:03:41.881][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/27495.xml"
biodb.DEBUG[2024-12-07 16:03:41.883][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:03:41.885][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:03:41.886][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:03:41.888][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:41.889][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:41.890][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:41.897][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:41.898][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:41.899][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:41.900][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:41.903][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:41.905][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:41.906][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.907][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.909][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:41.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:41.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.914][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:03:41.915][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:03:41.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.918][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.920][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:03:41.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:03:41.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.925][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:41.926][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:41.927][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.928][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.930][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:41.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:41.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.936][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:41.937][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:41.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.939][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.941][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:41.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:41.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.946][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:41.947][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:41.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.950][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.951][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:41.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:41.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.957][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:41.958][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:41.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.960][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.962][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:41.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:41.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.967][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:03:41.969][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:41.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.971][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.973][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:03:41.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:41.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.978][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:41.979][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:41.980][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.981][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.983][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:41.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:41.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.988][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:41.990][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:41.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.992][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.994][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:41.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:41.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.999][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:03:42.000][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:03:42.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.003][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.004][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:03:42.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:03:42.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.009][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:03:42.011][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:03:42.012][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.014][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.015][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:03:42.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:03:42.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.020][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:42.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:42.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.026][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:42.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:42.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:42.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:42.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.036][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:42.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:42.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:42.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:42.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:42.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:42.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:42.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:42.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.057][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:42.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:42.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.062][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:42.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:42.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:42.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:42.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:42.072][self$createEntryFromContent] Accession numbers: 27495.
biodb.TRACE[2024-12-07 16:03:42.073][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:42.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:42.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.078][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:42.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:42.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.083][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:42.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:42.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:42.088][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:03:42.090][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:42.091][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:42.092][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:42.099][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:42.100][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:42.101][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:42.102][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:42.104][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:42.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:42.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.109][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:42.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:42.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.114][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:42.115][private$selectFields]
biodb.TRACE[2024-12-07 16:03:42.116][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:42.117][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:42.118][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:42.120][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:42.121][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:42.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.123][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.124][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:42.126][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:42.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.128][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.129][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:42.131][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:42.132][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:42.133][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:42.134][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.136][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.137][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:03:42.138][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:42.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:42.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.143][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:42.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:42.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.148][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:42.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:42.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.164][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2024-12-07 16:03:42.166][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:42.167][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:42.168][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:42.175][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:42.176][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:42.177][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:42.178][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:42.180][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:42.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:42.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.184][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:42.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:42.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.189][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:42.191][private$selectFields]
biodb.TRACE[2024-12-07 16:03:42.192][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:42.193][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:42.194][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:42.195][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:42.197][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:42.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.199][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.200][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:42.202][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:42.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.204][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.205][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:42.206][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:42.208][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:42.209][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:42.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.211][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.212][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:03:42.214][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:42.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:42.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.219][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:42.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:42.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.224][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:42.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:42.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.229][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2024-12-07 16:03:42.230][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:42.231][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:42.232][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:42.239][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:42.240][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:42.241][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:42.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:42.243][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:42.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:42.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.248][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:42.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:42.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.253][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:42.255][private$selectFields]
biodb.TRACE[2024-12-07 16:03:42.256][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:42.257][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:42.258][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:42.260][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:42.261][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:42.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.263][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.264][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:42.266][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:42.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.268][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.269][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:42.271][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:42.272][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:42.273][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:42.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.275][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.277][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:03:42.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:42.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:42.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.283][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:42.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:42.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.288][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:42.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:42.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.293][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [27495].
biodb.DEBUG[2024-12-07 16:03:42.295][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:03:42.296][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:03:42.298][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:42.299][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:42.300][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:42.307][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:42.308][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:42.309][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:42.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:42.313][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:03:42.318][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:03:42.319][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2024-12-07 16:03:42.321][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:42.323][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2024-12-07 16:03:42.326][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:42.327][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:42.329][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:42.335][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:42.336][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:42.337][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:42.338][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:42.340][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:42.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:42.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.345][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:42.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:42.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.350][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:42.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:42.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:42.356][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:42.357][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:42.358][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:42.364][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:42.366][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:42.367][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:42.368][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:42.369][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:42.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:42.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.375][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:42.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:42.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.380][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:42.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:42.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:42.385][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:42.387][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:42.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:42.394][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:42.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:42.397][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:42.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:42.400][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:42.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:42.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.405][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:42.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:42.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.410][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:42.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:42.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:42.415][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:42.416][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:42.417][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:42.423][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:42.424][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:42.425][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:42.427][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:42.428][private$loadEntries] Creating entries from ids [1]: "65675".
biodb.DEBUG[2024-12-07 16:03:42.429][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:03:42.431][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65675".
biodb.TRACE[2024-12-07 16:03:42.433][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:03:42.434][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:03:42.435][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:03:42.437][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:03:42.438][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:03:42.439][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:03:42.442][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:42.443][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:42.444][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:42.451][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:42.452][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:42.453][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:42.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:42.456][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65675".
biodb.DEBUG[2024-12-07 16:03:42.459][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:03:42.461][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:03:42.464][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65675".
biodb.TRACE[2024-12-07 16:03:49.092][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65675).
biodb.DEBUG[2024-12-07 16:03:49.515][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:03:49.517][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5e9eb5601826c5f1539c216fc81b6e57.content"
biodb.TRACE[2024-12-07 16:03:49.521][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5e9eb5601826c5f1539c216fc81b6e57.request"
biodb.TRACE[2024-12-07 16:03:49.525][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65675.xml"
biodb.DEBUG[2024-12-07 16:03:49.527][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:03:49.528][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:03:49.529][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:03:49.531][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:49.533][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:49.534][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:49.540][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:49.541][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:49.542][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:49.543][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:49.546][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:49.547][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:49.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.550][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:49.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:49.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.556][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:03:49.557][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:03:49.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.560][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.561][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:03:49.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:03:49.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.566][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:49.568][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:49.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.570][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.572][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:49.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:49.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.577][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:49.578][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:49.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.580][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.582][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:49.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:49.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.587][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:49.588][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:49.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.590][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.592][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:49.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:49.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.597][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:49.598][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:49.599][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.600][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.602][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:03:49.603][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:49.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.606][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.607][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:03:49.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:49.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.612][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:49.613][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:49.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.616][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.617][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:49.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:49.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.622][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:49.624][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:49.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.626][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.628][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:49.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:49.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.633][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:03:49.634][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:03:49.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.637][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.638][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:03:49.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:03:49.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.651][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:03:49.652][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:03:49.654][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.655][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.656][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:03:49.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:03:49.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.661][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:49.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:49.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.666][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:49.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:49.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:49.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:49.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.676][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:49.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:49.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:49.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:49.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:49.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:49.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:49.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:49.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:49.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:49.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:49.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:49.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:49.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:49.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:49.710][self$createEntryFromContent] Accession numbers: 65675.
biodb.TRACE[2024-12-07 16:03:49.712][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:49.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:49.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.716][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:49.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:49.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.721][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:49.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:49.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:49.726][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:49.727][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:49.728][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:49.734][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:49.735][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:49.736][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:49.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:49.739][private$loadEntries] Creating entries from ids [1]: "66318".
biodb.DEBUG[2024-12-07 16:03:49.740][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:03:49.742][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66318".
biodb.TRACE[2024-12-07 16:03:49.744][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:03:49.745][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:03:49.746][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:03:49.747][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:03:49.749][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:03:49.750][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:03:49.753][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:49.754][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:49.755][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:49.761][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:49.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:49.764][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:49.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:49.766][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66318".
biodb.DEBUG[2024-12-07 16:03:49.770][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:03:49.771][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:03:49.773][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66318".
biodb.TRACE[2024-12-07 16:03:50.209][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66318).
biodb.DEBUG[2024-12-07 16:03:50.624][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:03:50.627][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f7af403e0af2ad309d5e7b7572ad9eab.content"
biodb.TRACE[2024-12-07 16:03:50.632][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f7af403e0af2ad309d5e7b7572ad9eab.request"
biodb.TRACE[2024-12-07 16:03:50.636][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66318.xml"
biodb.DEBUG[2024-12-07 16:03:50.638][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:03:50.639][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:03:50.641][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:03:50.643][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:50.644][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:50.645][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:50.652][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:50.653][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:50.654][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:50.655][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:50.658][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:50.659][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:50.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.662][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:50.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:50.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.669][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:03:50.670][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:03:50.671][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.673][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.674][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:03:50.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:03:50.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.680][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:50.681][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:50.682][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.684][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.685][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:50.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:50.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.691][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:50.692][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:50.693][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.694][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.696][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:50.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:50.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.701][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:50.703][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:50.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.705][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.707][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:50.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:50.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.712][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:50.713][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:50.714][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.715][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.717][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:03:50.718][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:50.720][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.721][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.722][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:03:50.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:50.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.728][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:50.729][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:50.730][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.731][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.733][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:50.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:50.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.738][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:50.740][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:50.741][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.742][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.744][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:50.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:50.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.749][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:03:50.750][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:03:50.752][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.753][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.755][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:03:50.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:03:50.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.760][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:03:50.761][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:03:50.762][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.763][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.765][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:03:50.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:03:50.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.770][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:50.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:50.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.775][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:50.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:50.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:50.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:50.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.785][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:50.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:50.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:50.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:50.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:50.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:50.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:50.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:50.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.806][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:50.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:50.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:50.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:50.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:50.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:50.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:50.822][self$createEntryFromContent] Accession numbers: 66318.
biodb.TRACE[2024-12-07 16:03:50.823][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:50.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:50.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.828][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:50.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:50.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.833][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:50.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:50.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:50.838][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:50.839][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:50.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:50.846][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:50.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:50.849][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:50.850][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:50.851][private$loadEntries] Creating entries from ids [1]: "67547".
biodb.DEBUG[2024-12-07 16:03:50.853][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:03:50.855][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67547".
biodb.TRACE[2024-12-07 16:03:50.856][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:03:50.858][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:03:50.859][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:03:50.860][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:03:50.862][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:03:50.863][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:03:50.866][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:50.867][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:50.868][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:50.875][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:50.876][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:50.877][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:50.878][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:50.880][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67547".
biodb.DEBUG[2024-12-07 16:03:50.884][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:03:50.885][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:03:50.887][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67547".
biodb.TRACE[2024-12-07 16:03:51.340][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67547).
biodb.DEBUG[2024-12-07 16:03:51.855][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:03:51.858][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5dcb6d289b29a3e5a91ef3f664ac8354.content"
biodb.TRACE[2024-12-07 16:03:51.862][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5dcb6d289b29a3e5a91ef3f664ac8354.request"
biodb.TRACE[2024-12-07 16:03:51.865][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67547.xml"
biodb.DEBUG[2024-12-07 16:03:51.867][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:03:51.869][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:03:51.870][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:03:51.872][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:51.873][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:51.875][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:51.881][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:51.882][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:51.883][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:51.884][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:51.887][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:51.889][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:51.890][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.891][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:51.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:51.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.909][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:03:51.910][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:03:51.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.912][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.914][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:03:51.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:03:51.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.919][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:51.920][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:51.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.923][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.924][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:51.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:51.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.929][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:51.931][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:51.932][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.933][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.935][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:51.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:51.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.940][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:51.941][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:51.942][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.943][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.945][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:51.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:51.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.950][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:51.951][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:51.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.954][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.955][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:51.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:51.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.960][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:03:51.962][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:51.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.964][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.966][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:03:51.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:51.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.971][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:51.972][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:51.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.974][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.976][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:51.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:51.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.981][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:51.982][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:51.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.984][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.986][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:51.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:51.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.991][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:03:51.992][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:03:51.993][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.995][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.996][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:03:51.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:03:51.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.001][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:03:52.002][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:03:52.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.005][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.006][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:03:52.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:03:52.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.011][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:52.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:52.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.016][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:52.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:52.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:52.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:52.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.026][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:52.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:52.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:52.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:52.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:52.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:52.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:52.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:52.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.047][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:52.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:52.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:52.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:52.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.057][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:52.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:52.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:52.062][self$createEntryFromContent] Accession numbers: 67547.
biodb.TRACE[2024-12-07 16:03:52.063][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:52.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:52.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.068][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:52.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:52.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.073][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:52.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:52.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:52.078][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:52.079][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:52.080][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:52.086][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:52.087][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:52.088][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:52.089][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:52.091][private$loadEntries] Creating entries from ids [1]: "69550".
biodb.DEBUG[2024-12-07 16:03:52.092][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:03:52.094][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69550".
biodb.TRACE[2024-12-07 16:03:52.096][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:03:52.097][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:03:52.098][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:03:52.100][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:03:52.101][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:03:52.102][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:03:52.105][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:52.106][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:52.107][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:52.113][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:52.115][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:52.116][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:52.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:52.118][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69550".
biodb.DEBUG[2024-12-07 16:03:52.122][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:03:52.123][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:03:52.125][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69550".
biodb.TRACE[2024-12-07 16:03:52.662][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69550).
biodb.DEBUG[2024-12-07 16:03:53.082][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:03:53.084][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/05703421c7bf99b1d8473c1de6165168.content"
biodb.TRACE[2024-12-07 16:03:53.089][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/05703421c7bf99b1d8473c1de6165168.request"
biodb.TRACE[2024-12-07 16:03:53.092][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69550.xml"
biodb.DEBUG[2024-12-07 16:03:53.094][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:03:53.095][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:03:53.097][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:03:53.099][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:53.100][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:53.101][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:53.107][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:53.109][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:53.110][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:53.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:53.113][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:53.115][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:53.116][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.117][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:53.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:53.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.124][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:03:53.125][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:03:53.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.127][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.129][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:03:53.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:03:53.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.134][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:53.135][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:53.137][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.138][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.139][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:53.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:53.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.144][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:53.146][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:53.147][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.148][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.150][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:53.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:53.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.155][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:53.156][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:53.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.158][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.160][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:53.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:53.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.165][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:53.166][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:53.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.169][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.170][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:03:53.172][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:53.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.174][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.176][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:03:53.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:53.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.181][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:53.182][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:53.183][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.184][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.186][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:53.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:53.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.191][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:53.192][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:53.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.195][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.197][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:53.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:53.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.202][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:03:53.203][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:03:53.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.205][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.207][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:03:53.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:03:53.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.212][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:03:53.213][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:03:53.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.216][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.217][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:03:53.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:03:53.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.223][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:53.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:53.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.228][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:53.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:53.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:53.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:53.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.238][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:53.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:53.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:53.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:53.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:53.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:53.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:53.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:53.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:53.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:53.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:53.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:53.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.268][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:53.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:53.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:53.273][self$createEntryFromContent] Accession numbers: 69550.
biodb.TRACE[2024-12-07 16:03:53.274][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:53.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:53.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.284][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:53.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:53.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.292][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:53.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:53.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:53.297][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:53.298][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:53.299][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:53.306][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:53.307][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:53.308][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:53.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:53.310][private$loadEntries] Creating entries from ids [1]: "71520".
biodb.DEBUG[2024-12-07 16:03:53.312][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:03:53.314][cch$loadFileContent] Trying to load 1 files from cache: [1]: "71520".
biodb.TRACE[2024-12-07 16:03:53.315][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:03:53.316][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:03:53.318][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:03:53.319][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:03:53.320][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:03:53.321][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:03:53.325][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:53.326][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:53.327][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:53.333][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:53.334][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:53.335][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:53.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:53.338][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71520".
biodb.DEBUG[2024-12-07 16:03:53.341][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:03:53.342][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:03:53.344][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71520".
biodb.TRACE[2024-12-07 16:03:53.785][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71520).
biodb.DEBUG[2024-12-07 16:03:54.202][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:03:54.205][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7ceab0ba86590faa4ea87df2e390610.content"
biodb.TRACE[2024-12-07 16:03:54.210][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7ceab0ba86590faa4ea87df2e390610.request"
biodb.TRACE[2024-12-07 16:03:54.213][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/71520.xml"
biodb.DEBUG[2024-12-07 16:03:54.215][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:03:54.216][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:03:54.218][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:03:54.219][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:54.221][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:54.222][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:54.228][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:54.229][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:54.230][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:54.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:54.234][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:54.235][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:54.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.238][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:54.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:54.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:54.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:54.244][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:03:54.245][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:03:54.246][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.248][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:54.249][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:03:54.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:03:54.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:54.254][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:54.255][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:54.257][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.258][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:54.259][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:54.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:54.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:54.264][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:54.265][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:54.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.268][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:54.269][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:54.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:54.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:54.274][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:54.276][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:54.277][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.278][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:54.279][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:54.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:54.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:54.285][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:54.286][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:54.287][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.288][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:54.290][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:03:54.291][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:54.292][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.293][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:54.295][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:03:54.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:54.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:54.300][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:54.301][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:54.303][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.304][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:54.305][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:54.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:54.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:54.310][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:54.312][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:54.313][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.314][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:54.316][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:54.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:54.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:54.321][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:03:54.322][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:03:54.323][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.325][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:54.326][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:03:54.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:03:54.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:54.331][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:03:54.332][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:03:54.334][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.335][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:54.336][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:03:54.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:03:54.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:54.341][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:54.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:54.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:54.347][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:54.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:54.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:54.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:54.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:54.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:54.358][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:54.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:54.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:54.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:54.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:54.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:54.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:54.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:54.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:54.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:54.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:54.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:54.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:54.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:54.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:54.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:54.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:54.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:54.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:54.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:54.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:54.414][self$createEntryFromContent] Accession numbers: 71520.
biodb.TRACE[2024-12-07 16:03:54.416][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:54.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:54.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:54.425][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:54.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:54.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:54.433][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:54.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:54.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:54.441][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:54.443][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:54.445][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:54.456][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:54.458][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:54.460][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:54.462][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:54.464][private$loadEntries] Creating entries from ids [1]: "77600".
biodb.DEBUG[2024-12-07 16:03:54.467][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:03:54.470][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77600".
biodb.TRACE[2024-12-07 16:03:54.473][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:03:54.476][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:03:54.479][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:03:54.481][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:03:54.483][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:03:54.485][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:03:54.491][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:54.493][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:54.495][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:54.506][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:54.508][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:54.510][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:54.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:54.514][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77600".
biodb.DEBUG[2024-12-07 16:03:54.520][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:03:54.522][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:03:54.525][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77600".
biodb.TRACE[2024-12-07 16:03:54.989][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77600).
biodb.DEBUG[2024-12-07 16:03:55.408][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:03:55.410][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/91aa415bb91d90afd912e94b5d252faa.content"
biodb.TRACE[2024-12-07 16:03:55.414][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/91aa415bb91d90afd912e94b5d252faa.request"
biodb.TRACE[2024-12-07 16:03:55.418][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77600.xml"
biodb.DEBUG[2024-12-07 16:03:55.419][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:03:55.421][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:03:55.422][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:03:55.424][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:55.425][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:55.426][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:55.433][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:55.434][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:55.435][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:55.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:55.439][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:55.440][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:55.441][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.442][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:55.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:55.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:55.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:55.449][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:03:55.450][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:03:55.451][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.452][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:55.454][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:03:55.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:03:55.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:55.459][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:55.460][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:55.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.463][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:55.464][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:55.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:55.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:55.469][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:55.471][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:55.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.473][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:55.474][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:55.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:55.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:55.479][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:55.481][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:55.482][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.483][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:55.485][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:55.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:55.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:55.490][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:55.491][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:55.492][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.493][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:55.495][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:03:55.496][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:55.497][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.499][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:55.500][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:03:55.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:55.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:55.505][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:55.506][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:55.508][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.509][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:55.510][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:55.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:55.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:55.526][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:55.528][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:55.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.530][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:55.532][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:55.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:55.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:55.537][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:03:55.538][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:03:55.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.540][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:55.542][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:03:55.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:03:55.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:55.547][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:03:55.548][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:03:55.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.551][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:55.552][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:03:55.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:03:55.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:55.557][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:55.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:55.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:55.562][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:55.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:55.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:55.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:55.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:55.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:55.572][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:55.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:55.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:55.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:55.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:55.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:55.582][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:55.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:55.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:55.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:55.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:55.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:55.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:55.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:55.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:55.597][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:55.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:55.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:55.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:55.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:55.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:55.606][self$createEntryFromContent] Accession numbers: 77600.
biodb.TRACE[2024-12-07 16:03:55.608][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:55.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:55.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:55.613][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:55.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:55.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:55.617][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:55.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:55.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:55.622][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:55.623][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:55.624][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:55.630][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:55.632][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:55.633][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:55.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:55.635][private$loadEntries] Creating entries from ids [1]: "77601".
biodb.DEBUG[2024-12-07 16:03:55.636][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:03:55.638][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77601".
biodb.TRACE[2024-12-07 16:03:55.640][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:03:55.641][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:03:55.642][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:03:55.644][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:03:55.645][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:03:55.646][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:03:55.649][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:55.650][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:55.651][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:55.658][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:55.659][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:55.660][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:55.661][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:55.662][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77601".
biodb.DEBUG[2024-12-07 16:03:55.666][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:03:55.667][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:03:55.669][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77601".
biodb.TRACE[2024-12-07 16:03:56.121][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77601).
biodb.DEBUG[2024-12-07 16:03:56.538][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:03:56.540][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ff0e48db0e5117b4127b12d15d1485a8.content"
biodb.TRACE[2024-12-07 16:03:56.544][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ff0e48db0e5117b4127b12d15d1485a8.request"
biodb.TRACE[2024-12-07 16:03:56.547][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77601.xml"
biodb.DEBUG[2024-12-07 16:03:56.549][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:03:56.551][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:03:56.552][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:03:56.554][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:56.555][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:56.556][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:56.562][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:56.564][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:56.565][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:56.566][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:56.569][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:56.570][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:56.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:56.572][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:56.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:56.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:56.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:56.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:56.579][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:03:56.580][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:03:56.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:56.583][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:56.584][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:03:56.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:03:56.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:56.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:56.589][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:56.591][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:56.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:56.593][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:56.595][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:56.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:56.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:56.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:56.600][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:56.601][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:56.602][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:56.603][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:56.605][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:56.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:56.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:56.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:56.610][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:56.611][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:56.613][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:56.614][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:56.615][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:56.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:56.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:56.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:56.620][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:56.622][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:03:56.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:56.624][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:56.626][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:03:56.627][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:56.628][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:56.629][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:56.631][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:03:56.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:56.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:56.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:56.636][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:56.637][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:56.638][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:56.640][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:56.641][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:56.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:56.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:56.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:56.646][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:56.647][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:56.649][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:56.650][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:56.652][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:56.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:56.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:56.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:56.657][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:03:56.658][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:03:56.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:56.660][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:56.662][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:03:56.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:03:56.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:56.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:56.667][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:03:56.668][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:03:56.669][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:56.671][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:56.672][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:03:56.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:03:56.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:56.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:56.677][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:56.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:56.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:56.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:56.682][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:56.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:56.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:56.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:56.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:56.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:56.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:56.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:56.692][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:56.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:56.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:56.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:56.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:56.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:56.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:56.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:56.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:56.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:56.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:56.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:56.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:56.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:56.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:56.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:56.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:56.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:56.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:56.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:56.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:56.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:56.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:56.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:56.722][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:56.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:56.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:56.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:56.727][self$createEntryFromContent] Accession numbers: 77601.
biodb.TRACE[2024-12-07 16:03:56.729][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:56.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:56.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:56.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:56.734][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:56.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:56.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:56.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:56.739][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:56.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:56.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:56.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:56.744][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:03:56.746][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:56.747][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:56.748][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:56.754][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:56.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:56.756][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:56.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:56.759][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:56.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:56.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:56.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:56.764][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:56.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:56.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:56.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:56.769][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:56.770][private$selectFields]
biodb.TRACE[2024-12-07 16:03:56.772][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:56.773][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:56.774][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:56.775][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:56.777][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:56.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:56.779][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:56.780][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:56.782][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:56.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:56.784][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:56.785][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:56.787][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:56.788][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:56.789][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:56.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:56.792][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:56.793][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:03:56.794][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:56.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:56.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:56.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:56.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:56.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:56.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:56.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:56.804][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:56.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:56.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:56.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:56.817][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2024-12-07 16:03:56.819][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:56.820][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:56.821][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:56.827][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:56.828][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:56.829][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:56.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:56.831][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:56.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:56.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:56.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:56.836][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:56.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:56.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:56.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:56.841][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:56.842][private$selectFields]
biodb.TRACE[2024-12-07 16:03:56.844][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:56.845][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:56.846][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:56.847][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:56.849][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:56.850][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:56.851][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:56.852][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:56.854][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:56.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:56.856][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:56.857][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:56.858][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:56.859][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:56.861][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:56.862][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:56.863][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:56.864][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:03:56.866][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:56.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:56.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:56.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:56.871][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:56.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:56.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:56.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:56.876][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:56.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:56.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:56.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:56.881][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [77600].
biodb.DEBUG[2024-12-07 16:03:56.882][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:56.883][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:56.884][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:56.890][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:56.891][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:56.892][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:56.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:56.895][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:56.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:56.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:56.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:56.900][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:56.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:56.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:56.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:56.905][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:56.906][private$selectFields]
biodb.TRACE[2024-12-07 16:03:56.907][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:56.908][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:56.909][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:56.911][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:56.912][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:56.913][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:56.914][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:56.915][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:56.917][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:56.918][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:56.919][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:56.920][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:56.921][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:56.923][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:56.924][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:56.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:56.926][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:56.927][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:03:56.929][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:56.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:56.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:56.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:56.934][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:56.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:56.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:56.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:56.938][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:56.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:56.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:56.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:56.944][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [77601].
biodb.DEBUG[2024-12-07 16:03:56.945][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:03:56.946][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-12-07 16:03:56.957][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-12-07 16:03:56.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-12-07 16:03:56.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:56.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:56.962][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-12-07 16:03:56.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-12-07 16:03:56.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:56.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:56.966][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-12-07 16:03:56.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-12-07 16:03:56.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:56.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-12-07 16:03:56.976][biodb::testThat]
biodb.INFO [2024-12-07 16:03:56.977][biodb::testThat] Running test function test_annotateMzValues_input_dataframe_untouched (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2024-12-07 16:03:56.978][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:03:56.979][biodb::testThat]
biodb.TRACE[2024-12-07 16:03:56.983][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-07 16:03:56.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-07 16:03:56.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:56.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:56.988][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-07 16:03:56.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-07 16:03:56.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:56.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:56.993][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-07 16:03:56.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-07 16:03:56.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:56.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:56.998][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:56.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.003][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.008][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.013][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.018][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.024][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.029][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.034][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.039][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.044][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.049][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.054][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:57.064][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:57.065][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:57.066][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:57.072][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:57.073][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:57.075][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:57.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:57.079][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:03:57.083][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:03:57.085][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-12-07 16:03:57.086][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:57.088][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-12-07 16:03:57.091][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:57.092][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:57.093][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:57.099][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:57.100][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:57.101][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:57.102][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:57.104][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.109][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.114][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:57.119][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:03:57.123][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:03:57.125][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-12-07 16:03:57.126][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:57.128][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-12-07 16:03:57.131][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:57.132][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:57.133][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:57.139][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:57.140][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:57.141][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:57.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:57.144][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.149][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.153][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:57.158][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:57.160][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:57.161][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:57.167][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:57.168][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:57.169][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:57.170][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:57.172][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.177][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.182][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:57.187][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:03:57.189][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:57.190][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:57.191][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:57.197][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:57.198][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:57.199][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:57.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:57.202][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.207][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.212][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:57.213][private$selectFields]
biodb.TRACE[2024-12-07 16:03:57.214][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:57.215][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:57.216][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:57.218][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.219][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.221][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.223][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.225][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.230][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.232][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:57.235][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:57.237][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.240][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.242][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.254][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.256][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:03:57.259][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.288][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2024-12-07 16:03:57.290][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:57.292][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:57.294][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:57.305][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:57.307][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:57.309][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:57.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:57.313][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.322][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.331][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:57.333][private$selectFields]
biodb.TRACE[2024-12-07 16:03:57.335][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:57.337][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:57.339][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:57.341][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.343][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.347][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.349][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.351][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.353][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.354][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.356][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:57.359][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:57.360][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.362][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.364][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.366][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:03:57.367][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.372][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.377][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.382][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-12-07 16:03:57.383][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:57.384][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:57.385][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:57.391][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:57.392][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:57.393][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:57.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:57.396][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.401][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.406][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:57.407][private$selectFields]
biodb.TRACE[2024-12-07 16:03:57.408][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:57.409][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:57.410][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:57.411][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.413][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.414][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.415][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.416][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.418][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.419][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.420][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.421][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:57.422][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:57.423][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.425][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.427][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.428][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:03:57.430][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.434][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.439][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.445][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2024-12-07 16:03:57.446][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:03:57.447][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:03:57.450][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:57.451][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:57.452][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:57.458][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:57.459][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:57.460][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:57.461][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:57.465][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:03:57.469][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:03:57.470][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2024-12-07 16:03:57.472][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:57.473][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2024-12-07 16:03:57.476][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:57.477][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:57.478][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:57.484][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:57.485][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:57.487][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:57.488][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:57.489][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.494][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.499][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:57.504][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:57.505][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:57.506][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:57.512][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:57.514][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:57.515][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:57.516][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:57.517][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.522][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.527][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:57.533][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:03:57.537][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:03:57.539][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2024-12-07 16:03:57.540][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:57.542][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2024-12-07 16:03:57.545][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:57.546][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:57.547][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:57.553][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:57.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:57.556][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:57.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:57.558][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.563][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.568][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:57.573][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:57.574][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:57.575][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:57.582][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:57.583][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:57.584][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:57.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:57.587][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.592][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.597][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:57.602][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:57.603][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:57.604][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:57.610][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:57.611][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:57.612][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:57.613][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:57.615][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.620][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.625][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:57.630][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:03:57.632][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:57.633][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:57.635][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:57.641][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:57.642][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:57.643][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:57.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:57.646][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.651][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.656][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:57.657][private$selectFields]
biodb.TRACE[2024-12-07 16:03:57.659][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:57.660][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:57.661][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:57.662][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.664][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.666][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.667][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.669][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.671][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.672][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:57.674][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:57.675][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.676][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.679][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.680][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:03:57.681][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.686][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.691][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.697][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-12-07 16:03:57.698][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:57.699][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:57.700][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:57.706][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:57.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:57.708][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:57.710][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:57.711][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.716][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.726][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:57.728][private$selectFields]
biodb.TRACE[2024-12-07 16:03:57.729][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:57.730][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:57.731][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:57.733][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.734][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.735][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.736][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.737][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.739][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.741][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.742][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:57.744][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:57.745][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.746][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.749][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.750][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:03:57.751][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.756][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.761][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.766][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2024-12-07 16:03:57.768][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:57.769][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:57.770][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:57.776][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:57.777][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:57.779][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:57.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:57.781][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.786][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.791][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:57.792][private$selectFields]
biodb.TRACE[2024-12-07 16:03:57.794][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:57.795][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:57.796][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:57.797][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.799][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.801][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.802][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.804][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.805][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.806][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.807][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:57.808][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:57.810][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.811][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.813][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.815][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:03:57.816][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.821][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.826][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:57.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.831][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2024-12-07 16:03:57.833][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:03:57.834][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:03:57.836][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:57.837][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:57.838][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:57.845][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:57.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:57.847][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:57.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:57.852][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:03:57.859][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:03:57.862][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2024-12-07 16:03:57.864][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:57.867][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2024-12-07 16:03:57.872][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:57.873][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:57.875][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:57.881][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:57.883][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:57.884][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:57.885][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:57.886][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.893][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.899][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:57.905][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:57.906][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:57.908][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:57.915][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:57.917][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:57.918][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:57.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:57.921][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.927][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.933][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:57.938][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:57.939][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:57.940][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:57.947][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:57.948][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:57.949][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:57.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:57.951][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.956][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.962][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:57.967][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:57.968][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:57.970][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:57.977][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:57.978][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:57.979][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:57.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:57.981][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.986][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:57.991][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:57.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:57.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:57.996][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:57.997][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:57.998][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:58.004][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:58.006][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:58.007][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:58.008][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:58.009][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:58.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:58.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.014][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:58.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:58.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.019][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:58.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:58.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:58.024][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:58.025][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:58.026][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:58.032][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:58.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:58.034][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:58.036][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:58.037][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:58.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:58.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.042][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:58.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:58.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.047][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:58.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:58.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:58.052][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:58.053][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:58.054][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:58.060][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:58.061][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:58.062][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:58.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:58.065][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:58.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:58.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.070][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:58.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:58.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.075][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:58.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:58.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:58.080][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:58.081][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:58.082][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:58.088][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:58.089][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:58.090][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:58.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:58.093][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:58.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:58.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.098][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:58.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:58.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.103][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:58.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:58.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:58.109][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:03:58.113][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:03:58.114][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2024-12-07 16:03:58.116][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:58.117][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2024-12-07 16:03:58.120][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:58.122][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:58.123][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:58.129][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:58.130][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:58.131][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:58.132][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:58.133][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:58.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:58.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.138][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:58.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:58.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.143][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:58.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:58.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:58.148][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:58.149][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:58.151][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:58.157][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:58.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:58.159][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:58.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:58.161][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:58.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:58.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.166][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:58.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:58.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.177][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:58.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:58.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:58.182][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:58.183][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:58.184][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:58.190][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:58.191][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:58.192][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:58.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:58.195][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:58.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:58.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.200][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:58.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:58.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.205][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:58.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:58.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:58.210][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:03:58.212][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:58.213][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:58.214][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:58.220][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:58.221][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:58.222][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:58.223][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:58.225][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.230][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.234][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:58.236][private$selectFields]
biodb.TRACE[2024-12-07 16:03:58.237][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:58.238][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:58.239][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:58.240][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.242][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.243][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.244][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.245][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.247][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.249][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.250][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:58.251][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:58.252][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.254][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.256][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.257][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:03:58.259][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.263][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.274][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-12-07 16:03:58.275][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:58.276][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:58.277][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:58.283][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:58.284][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:58.285][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:58.286][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:58.288][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.293][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.298][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:58.299][private$selectFields]
biodb.TRACE[2024-12-07 16:03:58.300][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:58.301][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:58.302][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:58.304][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.305][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.306][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.307][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.308][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.310][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.311][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.312][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.313][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:58.315][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:58.316][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.317][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.319][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.321][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:03:58.322][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.327][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.332][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.337][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2024-12-07 16:03:58.339][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:58.340][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:58.341][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:58.347][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:58.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:58.349][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:58.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:58.352][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.357][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.362][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:58.363][private$selectFields]
biodb.TRACE[2024-12-07 16:03:58.364][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:58.365][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:58.366][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:58.368][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.369][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.371][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.372][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.374][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.375][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.376][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.377][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:58.379][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:58.380][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.381][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.383][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.385][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:03:58.386][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.391][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.396][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.401][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2024-12-07 16:03:58.402][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:03:58.403][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-12-07 16:03:58.428][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:58.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:58.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.433][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:58.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:58.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.438][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:58.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:58.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.443][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:58.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:58.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.448][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:58.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:58.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.453][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:58.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:58.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.458][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:58.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:58.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.462][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:58.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:58.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.467][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:58.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:58.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.472][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:58.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:58.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.477][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:58.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:58.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.482][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:58.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:58.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:58.491][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:58.493][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:58.494][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:58.500][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:58.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:58.502][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:58.503][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:58.506][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:03:58.511][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:03:58.512][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-12-07 16:03:58.515][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:58.517][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-12-07 16:03:58.520][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:03:58.525][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:03:58.527][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-12-07 16:03:58.529][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:58.531][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-12-07 16:03:58.534][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:58.535][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:58.536][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:58.543][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:58.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:58.545][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:58.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:58.548][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:58.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:58.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.553][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:58.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:58.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.558][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:58.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:58.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:58.563][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:58.564][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:58.565][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:58.571][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:58.572][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:58.573][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:58.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:58.576][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:58.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:58.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.584][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:58.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:58.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.589][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:58.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:58.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:58.594][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:58.596][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:58.597][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:58.610][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:58.612][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:58.613][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:58.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:58.616][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:58.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:58.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.626][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:58.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:58.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.636][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:58.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:58.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:58.648][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:03:58.652][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:58.654][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:58.656][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:58.668][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:58.670][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:58.672][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:58.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:58.678][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.686][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.694][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:58.696][private$selectFields]
biodb.TRACE[2024-12-07 16:03:58.697][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:58.698][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:58.700][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:58.701][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.702][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.703][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.705][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.706][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.707][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.709][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.711][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.714][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:58.716][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:58.717][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.718][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.720][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.721][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.722][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:03:58.723][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.728][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.733][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.739][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-12-07 16:03:58.740][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:58.741][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:58.742][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:58.749][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:58.750][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:58.751][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:58.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:58.754][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.759][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.764][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:58.765][private$selectFields]
biodb.TRACE[2024-12-07 16:03:58.766][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:58.767][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:58.768][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:58.769][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.771][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.772][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.773][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.774][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.776][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.777][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.778][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.779][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:58.780][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:58.782][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.783][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.785][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.787][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:03:58.788][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.798][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.803][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-12-07 16:03:58.804][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:58.805][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:58.806][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:58.813][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:58.814][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:58.815][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:58.816][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:58.817][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.822][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.828][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:58.829][private$selectFields]
biodb.TRACE[2024-12-07 16:03:58.830][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:58.831][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:58.833][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:58.834][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.835][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.836][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.837][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.839][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.840][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.841][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.842][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.844][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:58.845][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:58.846][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.847][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.850][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.851][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:03:58.852][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.857][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.862][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:58.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.868][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-12-07 16:03:58.869][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:03:58.870][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:03:58.873][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:58.874][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:58.875][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:58.881][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:58.882][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:58.883][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:58.884][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:58.888][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:03:58.892][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:03:58.893][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2024-12-07 16:03:58.895][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:58.897][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2024-12-07 16:03:58.900][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:58.901][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:58.902][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:58.908][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:58.909][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:58.910][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:58.911][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:58.913][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:58.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:58.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.918][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:58.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:58.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.923][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:58.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:58.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:58.928][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:58.929][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:58.930][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:58.936][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:58.937][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:58.938][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:58.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:58.941][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:58.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:58.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.946][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:58.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:58.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.950][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:58.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:58.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:58.955][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:58.957][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:58.958][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:58.964][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:58.965][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:58.966][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:58.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:58.968][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:58.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:58.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.973][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:58.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:58.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:58.978][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:58.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:58.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:58.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:58.984][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:03:58.986][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:58.987][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:58.988][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:58.994][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:58.995][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:58.997][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:58.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:58.999][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.004][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.009][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:59.010][private$selectFields]
biodb.TRACE[2024-12-07 16:03:59.012][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:59.013][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:59.014][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:59.015][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.016][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.018][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.019][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.020][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.021][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.024][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.025][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:59.026][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:59.027][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.028][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.031][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.032][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:03:59.033][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.038][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.043][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.049][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-12-07 16:03:59.050][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:59.051][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:59.052][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:59.058][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:59.059][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:59.060][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:59.062][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:59.063][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.073][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.078][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:59.080][private$selectFields]
biodb.TRACE[2024-12-07 16:03:59.081][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:59.082][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:59.083][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:59.084][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.086][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.087][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.088][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.089][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.090][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.093][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.094][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:59.095][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:59.096][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.098][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.099][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.100][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.101][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:03:59.103][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.108][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.112][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.118][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2024-12-07 16:03:59.119][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:59.120][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:59.121][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:59.127][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:59.128][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:59.129][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:59.131][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:59.132][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.137][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.142][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:59.143][private$selectFields]
biodb.TRACE[2024-12-07 16:03:59.144][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:59.145][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:59.147][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:59.148][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.149][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.152][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.155][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.157][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.159][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.161][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.163][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:59.165][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:59.167][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.170][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.174][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.175][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:03:59.178][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.187][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.196][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.204][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2024-12-07 16:03:59.206][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:03:59.208][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:03:59.213][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:59.215][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:59.217][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:59.227][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:59.229][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:59.231][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:59.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:59.237][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:03:59.243][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:03:59.245][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2024-12-07 16:03:59.247][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:59.250][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2024-12-07 16:03:59.253][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:59.255][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:59.256][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:59.264][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:59.266][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:59.268][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:59.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:59.272][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:59.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:59.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.280][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:59.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:59.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.288][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:59.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:59.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:59.297][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:59.299][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:59.302][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:59.312][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:59.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:59.316][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:59.318][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:59.321][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:59.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:59.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.330][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:59.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:59.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.340][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:59.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:59.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:59.349][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:59.351][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:59.353][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:59.364][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:59.367][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:59.369][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:59.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:59.373][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:59.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:59.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.382][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:59.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:59.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.390][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:59.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:59.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:59.400][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:03:59.402][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:59.404][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:59.405][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:59.415][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:59.418][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:59.420][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:59.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:59.425][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.434][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.444][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:59.446][private$selectFields]
biodb.TRACE[2024-12-07 16:03:59.449][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:59.451][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:59.454][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:59.456][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.459][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.463][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.466][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.469][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.474][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.476][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:59.479][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:59.481][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.484][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.486][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.488][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.491][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:03:59.494][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.504][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.513][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.519][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2024-12-07 16:03:59.521][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:59.522][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:59.523][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:59.529][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:59.530][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:59.531][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:59.532][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:59.534][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.538][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.543][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:59.544][private$selectFields]
biodb.TRACE[2024-12-07 16:03:59.546][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:59.547][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:59.548][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:59.549][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.550][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.552][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.553][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.554][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.555][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.557][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.558][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.559][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:59.560][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:59.561][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.563][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.565][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.566][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:03:59.567][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.572][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.577][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.583][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2024-12-07 16:03:59.584][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:59.585][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:59.586][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:59.592][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:59.593][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:59.594][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:59.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:59.597][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.602][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.607][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:59.608][private$selectFields]
biodb.TRACE[2024-12-07 16:03:59.609][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:59.610][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:59.611][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:59.612][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.614][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.616][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.617][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.619][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.620][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.621][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.622][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:59.623][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:03:59.624][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.626][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.627][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.628][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.629][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:03:59.631][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.635][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.640][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:03:59.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.651][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2024-12-07 16:03:59.652][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:03:59.653][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-12-07 16:03:59.677][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-12-07 16:03:59.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-12-07 16:03:59.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.682][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-12-07 16:03:59.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-12-07 16:03:59.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.687][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-12-07 16:03:59.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-12-07 16:03:59.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.695][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:59.697][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:59.698][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.699][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.700][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:59.701][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:59.703][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.704][ef$get] fields variable is a list.
biodb.INFO [2024-12-07 16:03:59.706][biodb::testThat]
biodb.INFO [2024-12-07 16:03:59.707][biodb::testThat] Running test function test.annotateMzValues_real_values (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2024-12-07 16:03:59.708][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:03:59.709][biodb::testThat]
biodb.TRACE[2024-12-07 16:03:59.712][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-07 16:03:59.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-07 16:03:59.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.717][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-07 16:03:59.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-07 16:03:59.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.722][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-07 16:03:59.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-07 16:03:59.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.727][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:59.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:59.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.732][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:59.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:59.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.737][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:59.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:59.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.742][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:59.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:59.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.746][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:59.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:59.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.751][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:59.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:59.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.756][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:59.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:59.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.761][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:59.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:59.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:59.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:59.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.771][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:59.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:59.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.776][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:59.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:59.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:59.781][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:59.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:59.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:59.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:59.788][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:59.790][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:59.791][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:59.797][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:59.798][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:59.799][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:59.800][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:59.804][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:03:59.808][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:03:59.810][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:03:59.812][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-12-07 16:04:00.281][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-12-07 16:04:00.811][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:04:00.813][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ebf8c17fa19fb0caf99d83ca8441a2ac.content"
biodb.TRACE[2024-12-07 16:04:00.819][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ebf8c17fa19fb0caf99d83ca8441a2ac.request"
biodb.DEBUG[2024-12-07 16:04:00.827][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:00.828][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:00.829][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:00.835][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:00.837][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:00.838][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:00.839][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:00.840][private$loadEntries] Creating entries from ids [1]: "3014".
biodb.DEBUG[2024-12-07 16:04:00.841][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:04:00.843][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3014".
biodb.TRACE[2024-12-07 16:04:00.845][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:04:00.846][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:04:00.848][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:04:00.849][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:04:00.850][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:04:00.851][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:04:00.855][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:00.856][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:00.857][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:00.863][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:00.864][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:00.866][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:00.867][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:00.868][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3014".
biodb.DEBUG[2024-12-07 16:04:00.872][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:04:00.873][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:04:00.875][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3014".
biodb.TRACE[2024-12-07 16:04:01.310][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3014).
biodb.DEBUG[2024-12-07 16:04:01.728][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:04:01.731][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/48c0bb0df5de824dbe83babbff8d81fe.content"
biodb.TRACE[2024-12-07 16:04:01.735][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/48c0bb0df5de824dbe83babbff8d81fe.request"
biodb.TRACE[2024-12-07 16:04:01.739][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3014.xml"
biodb.DEBUG[2024-12-07 16:04:01.741][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:04:01.742][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:04:01.744][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:04:01.746][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:01.747][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:01.748][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:01.754][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:01.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:01.757][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:01.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:01.760][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:01.762][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:01.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:01.764][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:01.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:01.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:01.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:01.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:01.771][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:01.772][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:01.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:01.775][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:01.776][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:01.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:01.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:01.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:01.781][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:01.783][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:01.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:01.785][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:01.787][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:01.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:01.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:01.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:01.792][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:01.794][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:01.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:01.796][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:01.798][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:01.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:01.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:01.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:01.803][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:01.804][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:01.805][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:01.807][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:01.808][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:01.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:01.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:01.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:01.813][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:01.815][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:01.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:01.817][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:01.818][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:01.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:01.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:01.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:01.824][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:01.825][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:01.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:01.828][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:01.829][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:01.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:01.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:01.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:01.834][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:01.836][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:01.837][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:01.838][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:01.840][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:01.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:01.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:01.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:01.845][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:01.847][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:01.848][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:01.849][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:01.851][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:01.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:01.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:01.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:01.856][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:01.858][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:01.859][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:01.860][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:01.862][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:01.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:01.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:01.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:01.867][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:01.868][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:01.869][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:01.870][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:01.872][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:01.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:01.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:01.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:01.877][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:01.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:01.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:01.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:01.882][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:01.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:01.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:01.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:01.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:01.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:01.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:01.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:01.892][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:01.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:01.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:01.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:01.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:01.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:01.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:01.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:01.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:01.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:01.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:01.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:01.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:01.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:01.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:01.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:01.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:01.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:01.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:01.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:01.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:01.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:01.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:01.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:01.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:01.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:01.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:01.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:01.965][self$createEntryFromContent] Accession numbers: 3014.
biodb.TRACE[2024-12-07 16:04:01.966][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:01.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:01.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:01.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:01.971][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:01.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:01.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:01.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:01.976][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:01.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:01.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:01.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:01.981][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:01.982][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:01.983][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:01.989][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:01.990][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:01.992][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:01.993][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:01.994][private$loadEntries] Creating entries from ids [1]: "7567".
biodb.DEBUG[2024-12-07 16:04:01.995][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:04:01.997][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7567".
biodb.TRACE[2024-12-07 16:04:01.999][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:04:02.000][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:04:02.001][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:04:02.003][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:04:02.004][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:04:02.005][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:04:02.008][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:02.010][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:02.011][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:02.017][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:02.018][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:02.019][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:02.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:02.022][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7567".
biodb.DEBUG[2024-12-07 16:04:02.025][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:04:02.026][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:04:02.028][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7567".
biodb.TRACE[2024-12-07 16:04:02.474][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7567).
biodb.DEBUG[2024-12-07 16:04:02.891][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:04:02.893][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5365299c16307afdd0b9fe7b73b123c.content"
biodb.TRACE[2024-12-07 16:04:02.898][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5365299c16307afdd0b9fe7b73b123c.request"
biodb.TRACE[2024-12-07 16:04:02.901][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7567.xml"
biodb.DEBUG[2024-12-07 16:04:02.903][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:04:02.904][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:04:02.906][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:04:02.908][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:02.909][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:02.910][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:02.916][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:02.917][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:02.919][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:02.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:02.922][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:02.924][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:02.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:02.926][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:02.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:02.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:02.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:02.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:02.933][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:02.934][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:02.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:02.936][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:02.938][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:02.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:02.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:02.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:02.943][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:02.944][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:02.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:02.947][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:02.948][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:02.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:02.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:02.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:02.954][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:02.955][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:02.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:02.957][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:02.959][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:02.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:02.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:02.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:02.964][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:02.965][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:02.966][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:02.968][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:02.969][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:02.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:02.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:02.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:02.974][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:02.976][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:02.977][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:02.978][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:02.980][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:02.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:02.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:02.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:02.985][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:02.986][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:02.987][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:02.988][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:02.990][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:02.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:02.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:02.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:02.995][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:02.997][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:02.998][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:03.000][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:03.002][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:03.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:03.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:03.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:03.008][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:03.010][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:03.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:03.012][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:03.015][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:03.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:03.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:03.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:03.021][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:03.022][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:03.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:03.025][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:03.027][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:03.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:03.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:03.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:03.033][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:03.035][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:03.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:03.038][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:03.039][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:03.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:03.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:03.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:03.045][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:03.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:03.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:03.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:03.050][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:03.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:03.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:03.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:03.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:03.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:03.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:03.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:03.060][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:03.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:03.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:03.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:03.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:03.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:03.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:03.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:03.070][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:03.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:03.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:03.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:03.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:03.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:03.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:03.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:03.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:03.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:03.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:03.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:03.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:03.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:03.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:03.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:03.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:03.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:03.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:03.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:03.098][self$createEntryFromContent] Accession numbers: 7567.
biodb.TRACE[2024-12-07 16:04:03.100][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:03.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:03.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:03.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:03.106][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:03.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:03.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:03.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:03.111][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:03.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:03.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:03.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:03.116][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:03.117][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:03.118][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:03.125][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:03.126][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:03.127][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:03.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:03.130][private$loadEntries] Creating entries from ids [1]: "8021".
biodb.DEBUG[2024-12-07 16:04:03.131][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:04:03.133][cch$loadFileContent] Trying to load 1 files from cache: [1]: "8021".
biodb.TRACE[2024-12-07 16:04:03.135][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:04:03.136][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:04:03.138][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:04:03.139][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:04:03.140][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:04:03.142][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:04:03.145][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:03.146][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:03.147][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:03.154][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:03.155][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:03.156][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:03.158][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:03.159][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=8021".
biodb.DEBUG[2024-12-07 16:04:03.163][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:04:03.164][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:04:03.166][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=8021".
biodb.TRACE[2024-12-07 16:04:03.615][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=8021).
biodb.DEBUG[2024-12-07 16:04:04.031][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:04:04.034][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6017fc384c334739eec9b216fa851a5.content"
biodb.TRACE[2024-12-07 16:04:04.038][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6017fc384c334739eec9b216fa851a5.request"
biodb.TRACE[2024-12-07 16:04:04.042][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8021.xml"
biodb.DEBUG[2024-12-07 16:04:04.044][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:04:04.045][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:04:04.047][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:04:04.049][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:04.050][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:04.051][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:04.057][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:04.058][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:04.060][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:04.061][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:04.064][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:04.065][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:04.066][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:04.067][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:04.069][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:04.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:04.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:04.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:04.074][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:04.076][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:04.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:04.078][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:04.080][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:04.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:04.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:04.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:04.088][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:04.089][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:04.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:04.092][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:04.094][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:04.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:04.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:04.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:04.100][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:04.102][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:04.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:04.104][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:04.106][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:04.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:04.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:04.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:04.113][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:04.118][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:04.120][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:04.122][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:04.123][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:04.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:04.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:04.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:04.140][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:04.141][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:04.142][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:04.143][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:04.145][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:04.146][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:04.147][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:04.149][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:04.150][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:04.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:04.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:04.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:04.155][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:04.156][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:04.158][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:04.159][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:04.160][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:04.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:04.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:04.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:04.165][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:04.167][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:04.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:04.169][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:04.171][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:04.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:04.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:04.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:04.176][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:04.177][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:04.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:04.180][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:04.181][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:04.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:04.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:04.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:04.186][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:04.188][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:04.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:04.190][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:04.191][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:04.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:04.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:04.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:04.197][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:04.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:04.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:04.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:04.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:04.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:04.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:04.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:04.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:04.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:04.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:04.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:04.211][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:04.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:04.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:04.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:04.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:04.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:04.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:04.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:04.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:04.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:04.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:04.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:04.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:04.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:04.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:04.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:04.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:04.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:04.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:04.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:04.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:04.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:04.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:04.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:04.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:04.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:04.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:04.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:04.246][self$createEntryFromContent] Accession numbers: 8021.
biodb.TRACE[2024-12-07 16:04:04.248][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:04.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:04.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:04.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:04.253][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:04.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:04.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:04.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:04.258][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:04.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:04.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:04.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:04.263][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:04.264][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:04.265][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:04.272][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:04.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:04.274][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:04.275][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:04.276][private$loadEntries] Creating entries from ids [1]: "30382".
biodb.DEBUG[2024-12-07 16:04:04.278][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:04:04.280][cch$loadFileContent] Trying to load 1 files from cache: [1]: "30382".
biodb.TRACE[2024-12-07 16:04:04.281][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:04:04.283][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:04:04.284][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:04:04.285][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:04:04.287][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:04:04.288][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:04:04.291][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:04.292][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:04.293][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:04.299][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:04.300][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:04.302][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:04.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:04.304][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30382".
biodb.DEBUG[2024-12-07 16:04:04.308][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:04:04.309][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:04:04.311][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30382".
biodb.TRACE[2024-12-07 16:04:04.743][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30382).
biodb.DEBUG[2024-12-07 16:04:05.159][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:04:05.161][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/762ae1b4688e0a5ef1a1419b25f545f9.content"
biodb.TRACE[2024-12-07 16:04:05.166][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/762ae1b4688e0a5ef1a1419b25f545f9.request"
biodb.TRACE[2024-12-07 16:04:05.170][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/30382.xml"
biodb.DEBUG[2024-12-07 16:04:05.173][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:04:05.174][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:04:05.176][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:04:05.178][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:05.179][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:05.180][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:05.186][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:05.188][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:05.189][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:05.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:05.193][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:05.194][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:05.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:05.196][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:05.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:05.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:05.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:05.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:05.203][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:05.204][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:05.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:05.207][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:05.208][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:05.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:05.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:05.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:05.213][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:05.215][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:05.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:05.217][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:05.219][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:05.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:05.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:05.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:05.224][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:05.225][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:05.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:05.228][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:05.229][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:05.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:05.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:05.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:05.234][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:05.236][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:05.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:05.238][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:05.240][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:05.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:05.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:05.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:05.245][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:05.246][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:05.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:05.248][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:05.250][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:05.251][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:05.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:05.254][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:05.255][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:05.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:05.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:05.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:05.260][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:05.262][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:05.263][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:05.264][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:05.266][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:05.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:05.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:05.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:05.271][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:05.272][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:05.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:05.275][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:05.277][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:05.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:05.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:05.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:05.282][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:05.283][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:05.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:05.285][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:05.287][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:05.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:05.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:05.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:05.292][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:05.293][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:05.295][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:05.296][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:05.297][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:05.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:05.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:05.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:05.302][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:05.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:05.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:05.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:05.307][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:05.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:05.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:05.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:05.312][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:05.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:05.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:05.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:05.317][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:05.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:05.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:05.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:05.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:05.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:05.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:05.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:05.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:05.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:05.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:05.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:05.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:05.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:05.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:05.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:05.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:05.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:05.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:05.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:05.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:05.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:05.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:05.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:05.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:05.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:05.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:05.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:05.353][self$createEntryFromContent] Accession numbers: 30382.
biodb.TRACE[2024-12-07 16:04:05.354][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:05.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:05.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:05.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:05.359][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:05.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:05.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:05.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:05.364][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:05.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:05.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:05.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:05.370][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:04:05.372][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:05.373][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:05.374][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:05.380][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:05.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:05.383][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:05.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:05.386][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:05.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:05.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:05.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:05.391][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:05.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:05.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:05.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:05.397][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:05.398][private$selectFields]
biodb.TRACE[2024-12-07 16:04:05.399][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:04:05.400][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:04:05.402][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:05.403][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:05.404][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:05.405][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:05.407][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:05.408][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:05.417][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:05.418][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:05.420][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:05.421][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:05.422][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:05.423][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:05.425][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:05.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:05.427][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:05.428][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:04:05.430][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:05.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:05.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:05.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:05.434][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:05.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:05.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:05.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:05.439][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:05.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:05.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:05.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:05.445][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2024-12-07 16:04:05.446][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:05.447][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:05.448][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:05.454][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:05.456][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:05.457][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:05.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:05.459][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:05.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:05.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:05.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:05.464][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:05.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:05.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:05.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:05.469][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:05.470][private$selectFields]
biodb.TRACE[2024-12-07 16:04:05.472][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:04:05.473][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:04:05.474][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:05.475][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:05.477][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:05.478][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:05.479][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:05.480][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:05.481][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:05.483][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:05.484][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:05.485][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:05.486][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:05.487][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:05.489][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:05.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:05.491][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:05.492][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:04:05.493][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:05.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:05.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:05.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:05.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:05.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:05.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:05.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:05.503][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:05.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:05.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:05.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:05.509][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [8021].
biodb.DEBUG[2024-12-07 16:04:05.510][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:05.511][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:05.512][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:05.518][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:05.520][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:05.521][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:05.522][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:05.523][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:05.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:05.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:05.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:05.528][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:05.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:05.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:05.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:05.533][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:05.534][private$selectFields]
biodb.TRACE[2024-12-07 16:04:05.535][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:04:05.537][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:04:05.538][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:05.539][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:05.540][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:05.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:05.543][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:05.544][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:05.545][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:05.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:05.548][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:05.549][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:05.550][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:05.551][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:05.553][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:05.554][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:05.555][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:05.556][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:04:05.558][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:05.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:05.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:05.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:05.563][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:05.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:05.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:05.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:05.568][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:05.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:05.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:05.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:05.573][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [30382].
biodb.DEBUG[2024-12-07 16:04:05.574][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:04:05.575][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:04:05.578][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:05.579][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:05.580][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:05.586][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:05.587][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:05.588][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:05.589][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:05.593][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:04:05.597][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:04:05.598][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:04:05.601][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-12-07 16:04:06.054][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-12-07 16:04:06.491][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:04:06.493][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/152225e020c3e5947a0f5a90f021cee7.content"
biodb.TRACE[2024-12-07 16:04:06.498][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/152225e020c3e5947a0f5a90f021cee7.request"
biodb.DEBUG[2024-12-07 16:04:06.503][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:06.504][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:06.505][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:06.512][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:06.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:06.514][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:06.515][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:06.516][private$loadEntries] Creating entries from ids [1]: "9710".
biodb.DEBUG[2024-12-07 16:04:06.518][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:04:06.520][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9710".
biodb.TRACE[2024-12-07 16:04:06.521][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:04:06.522][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:04:06.524][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:04:06.525][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:04:06.526][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:04:06.527][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:04:06.531][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:06.532][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:06.533][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:06.539][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:06.541][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:06.542][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:06.543][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:06.545][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9710".
biodb.DEBUG[2024-12-07 16:04:06.548][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:04:06.549][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:04:06.551][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9710".
biodb.TRACE[2024-12-07 16:04:06.993][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9710).
biodb.DEBUG[2024-12-07 16:04:07.408][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:04:07.411][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b7c920ea46a15bb7175f778579142c91.content"
biodb.TRACE[2024-12-07 16:04:07.415][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b7c920ea46a15bb7175f778579142c91.request"
biodb.TRACE[2024-12-07 16:04:07.418][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9710.xml"
biodb.DEBUG[2024-12-07 16:04:07.420][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:04:07.422][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:04:07.423][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:04:07.425][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:07.426][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:07.427][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:07.433][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:07.434][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:07.436][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:07.437][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:07.439][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:07.441][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:07.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:07.443][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:07.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:07.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:07.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:07.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:07.449][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:07.451][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:07.452][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:07.453][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:07.455][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:07.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:07.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:07.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:07.460][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:07.461][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:07.462][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:07.463][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:07.465][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:07.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:07.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:07.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:07.470][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:07.471][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:07.473][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:07.474][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:07.475][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:07.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:07.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:07.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:07.480][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:07.481][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:07.483][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:07.484][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:07.485][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:07.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:07.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:07.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:07.490][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:07.492][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:07.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:07.494][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:07.495][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:07.497][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:07.498][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:07.499][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:07.501][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:07.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:07.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:07.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:07.506][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:07.507][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:07.508][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:07.509][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:07.511][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:07.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:07.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:07.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:07.516][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:07.517][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:07.518][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:07.520][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:07.521][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:07.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:07.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:07.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:07.527][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:07.528][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:07.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:07.530][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:07.532][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:07.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:07.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:07.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:07.537][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:07.538][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:07.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:07.541][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:07.542][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:07.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:07.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:07.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:07.547][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:07.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:07.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:07.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:07.552][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:07.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:07.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:07.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:07.557][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:07.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:07.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:07.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:07.562][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:07.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:07.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:07.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:07.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:07.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:07.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:07.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:07.572][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:07.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:07.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:07.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:07.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:07.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:07.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:07.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:07.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:07.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:07.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:07.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:07.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:07.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:07.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:07.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:07.604][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:07.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:07.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:07.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:07.609][self$createEntryFromContent] Accession numbers: 9710.
biodb.TRACE[2024-12-07 16:04:07.610][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:07.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:07.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:07.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:07.615][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:07.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:07.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:07.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:07.620][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:07.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:07.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:07.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:07.625][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:07.626][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:07.627][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:07.634][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:07.635][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:07.636][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:07.637][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:07.638][private$loadEntries] Creating entries from ids [1]: "65530".
biodb.DEBUG[2024-12-07 16:04:07.640][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:04:07.642][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65530".
biodb.TRACE[2024-12-07 16:04:07.643][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:04:07.644][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:04:07.646][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:04:07.647][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:04:07.648][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:04:07.650][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:04:07.653][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:07.654][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:07.655][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:07.661][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:07.662][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:07.663][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:07.664][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:07.666][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65530".
biodb.DEBUG[2024-12-07 16:04:07.669][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:04:07.671][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:04:07.672][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65530".
biodb.TRACE[2024-12-07 16:04:08.128][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65530).
biodb.DEBUG[2024-12-07 16:04:08.550][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:04:08.553][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bb7ff6c0bdfa280406af23f96ee06f80.content"
biodb.TRACE[2024-12-07 16:04:08.557][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bb7ff6c0bdfa280406af23f96ee06f80.request"
biodb.TRACE[2024-12-07 16:04:08.560][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65530.xml"
biodb.DEBUG[2024-12-07 16:04:08.562][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:04:08.563][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:04:08.565][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:04:08.567][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:08.568][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:08.569][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:08.575][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:08.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:08.577][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:08.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:08.581][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:08.583][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:08.584][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:08.585][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:08.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:08.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:08.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:08.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:08.592][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:08.593][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:08.594][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:08.595][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:08.597][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:08.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:08.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:08.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:08.602][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:08.603][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:08.605][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:08.606][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:08.607][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:08.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:08.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:08.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:08.612][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:08.614][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:08.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:08.616][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:08.618][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:08.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:08.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:08.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:08.623][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:08.624][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:08.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:08.627][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:08.628][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:08.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:08.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:08.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:08.633][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:08.635][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:08.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:08.637][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:08.638][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:08.640][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:08.641][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:08.642][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:08.644][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:08.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:08.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:08.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:08.649][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:08.650][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:08.651][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:08.653][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:08.654][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:08.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:08.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:08.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:08.659][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:08.661][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:08.662][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:08.663][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:08.665][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:08.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:08.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:08.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:08.670][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:08.671][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:08.672][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:08.673][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:08.675][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:08.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:08.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:08.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:08.680][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:08.681][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:08.683][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:08.684][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:08.685][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:08.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:08.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:08.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:08.690][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:08.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:08.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:08.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:08.695][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:08.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:08.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:08.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:08.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:08.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:08.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:08.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:08.705][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:08.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:08.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:08.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:08.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:08.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:08.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:08.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:08.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:08.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:08.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:08.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:08.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:08.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:08.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:08.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:08.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:08.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:08.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:08.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:08.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:08.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:08.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:08.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:08.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:08.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:08.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:08.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:08.758][self$createEntryFromContent] Accession numbers: 65530.
biodb.TRACE[2024-12-07 16:04:08.761][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:08.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:08.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:08.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:08.772][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:08.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:08.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:08.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:08.781][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:08.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:08.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:08.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:08.791][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:08.793][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:08.796][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:08.807][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:08.809][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:08.811][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:08.813][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:08.815][private$loadEntries] Creating entries from ids [1]: "72338".
biodb.DEBUG[2024-12-07 16:04:08.817][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:04:08.821][cch$loadFileContent] Trying to load 1 files from cache: [1]: "72338".
biodb.TRACE[2024-12-07 16:04:08.824][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:04:08.827][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:04:08.829][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:04:08.832][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:04:08.834][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:04:08.836][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:04:08.842][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:08.844][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:08.846][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:08.857][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:08.860][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:08.861][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:08.863][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:08.866][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=72338".
biodb.DEBUG[2024-12-07 16:04:08.872][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:04:08.874][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:04:08.878][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=72338".
biodb.TRACE[2024-12-07 16:04:09.320][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=72338).
biodb.DEBUG[2024-12-07 16:04:09.738][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:04:09.741][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e64dda61e0a44a21c5b0eb3609a4a7b.content"
biodb.TRACE[2024-12-07 16:04:09.745][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e64dda61e0a44a21c5b0eb3609a4a7b.request"
biodb.TRACE[2024-12-07 16:04:09.749][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/72338.xml"
biodb.DEBUG[2024-12-07 16:04:09.751][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:04:09.752][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:04:09.754][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:04:09.756][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:09.757][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:09.758][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:09.764][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:09.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:09.767][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:09.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:09.771][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:09.772][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:09.773][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:09.774][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:09.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:09.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:09.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:09.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:09.781][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:09.782][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:09.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:09.785][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:09.786][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:09.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:09.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:09.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:09.791][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:09.793][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:09.794][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:09.795][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:09.797][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:09.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:09.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:09.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:09.802][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:09.803][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:09.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:09.806][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:09.807][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:09.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:09.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:09.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:09.812][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:09.814][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:09.815][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:09.821][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:09.829][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:09.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:09.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:09.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:09.834][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:09.836][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:09.837][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:09.838][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:09.840][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:09.841][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:09.842][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:09.843][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:09.845][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:09.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:09.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:09.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:09.850][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:09.852][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:09.853][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:09.854][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:09.855][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:09.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:09.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:09.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:09.861][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:09.862][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:09.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:09.864][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:09.866][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:09.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:09.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:09.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:09.872][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:09.873][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:09.874][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:09.876][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:09.877][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:09.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:09.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:09.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:09.882][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:09.884][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:09.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:09.886][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:09.888][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:09.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:09.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:09.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:09.893][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:09.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:09.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:09.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:09.898][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:09.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:09.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:09.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:09.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:09.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:09.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:09.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:09.908][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:09.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:09.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:09.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:09.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:09.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:09.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:09.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:09.918][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:09.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:09.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:09.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:09.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:09.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:09.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:09.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:09.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:09.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:09.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:09.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:09.934][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:09.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:09.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:09.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:09.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:09.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:09.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:09.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:09.944][self$createEntryFromContent] Accession numbers: 72338.
biodb.TRACE[2024-12-07 16:04:09.945][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:09.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:09.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:09.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:09.950][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:09.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:09.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:09.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:09.955][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:09.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:09.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:09.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:09.960][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:09.961][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:09.963][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:09.969][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:09.970][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:09.972][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:09.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:09.974][private$loadEntries] Creating entries from ids [1]: "77926".
biodb.DEBUG[2024-12-07 16:04:09.976][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:04:09.978][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77926".
biodb.TRACE[2024-12-07 16:04:09.979][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:04:09.981][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:04:09.982][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:04:09.983][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:04:09.985][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:04:09.986][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:04:09.989][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:09.990][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:09.991][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:09.998][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:09.999][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:10.000][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:10.001][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:10.003][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77926".
biodb.DEBUG[2024-12-07 16:04:10.006][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:04:10.007][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:04:10.009][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77926".
biodb.TRACE[2024-12-07 16:04:10.452][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77926).
biodb.DEBUG[2024-12-07 16:04:10.872][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:04:10.875][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9ad4fcb4fcba98dcbec5ee6292352f7b.content"
biodb.TRACE[2024-12-07 16:04:10.879][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9ad4fcb4fcba98dcbec5ee6292352f7b.request"
biodb.TRACE[2024-12-07 16:04:10.883][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77926.xml"
biodb.DEBUG[2024-12-07 16:04:10.884][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:04:10.886][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:04:10.887][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:04:10.889][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:10.891][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:10.892][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:10.898][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:10.899][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:10.900][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:10.901][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:10.904][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:10.906][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:10.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:10.908][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:10.909][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:10.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:10.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:10.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:10.915][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:10.916][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:10.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:10.918][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:10.920][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:10.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:10.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:10.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:10.925][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:10.927][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:10.928][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:10.929][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:10.930][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:10.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:10.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:10.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:10.936][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:10.937][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:10.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:10.939][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:10.941][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:10.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:10.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:10.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:10.946][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:10.947][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:10.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:10.950][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:10.951][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:10.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:10.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:10.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:10.956][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:10.958][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:10.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:10.960][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:10.962][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:10.963][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:10.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:10.966][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:10.967][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:10.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:10.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:10.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:10.972][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:10.974][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:10.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:10.976][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:10.978][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:10.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:10.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:10.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:10.983][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:10.984][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:10.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:10.986][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:10.988][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:10.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:10.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:10.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:10.994][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:10.995][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:10.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:10.997][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:10.999][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:11.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:11.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:11.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:11.004][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:11.005][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:11.007][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:11.008][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:11.009][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:11.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:11.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:11.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:11.015][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:11.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:11.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:11.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:11.020][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:11.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:11.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:11.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:11.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:11.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:11.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:11.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:11.030][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:11.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:11.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:11.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:11.035][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:11.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:11.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:11.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:11.040][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:11.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:11.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:11.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:11.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:11.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:11.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:11.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:11.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:11.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:11.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:11.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:11.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:11.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:11.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:11.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:11.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:11.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:11.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:11.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:11.066][self$createEntryFromContent] Accession numbers: 77926.
biodb.TRACE[2024-12-07 16:04:11.068][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:11.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:11.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:11.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:11.073][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:11.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:11.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:11.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:11.078][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:11.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:11.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:11.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:11.083][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:11.084][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:11.085][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:11.091][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:11.092][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:11.094][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:11.095][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:11.096][private$loadEntries] Creating entries from ids [1]: "82369".
biodb.DEBUG[2024-12-07 16:04:11.097][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:04:11.099][cch$loadFileContent] Trying to load 1 files from cache: [1]: "82369".
biodb.TRACE[2024-12-07 16:04:11.101][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:04:11.102][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:04:11.104][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:04:11.105][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:04:11.106][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:04:11.107][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:04:11.111][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:11.112][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:11.113][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:11.127][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:11.129][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:11.130][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:11.131][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:11.132][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=82369".
biodb.DEBUG[2024-12-07 16:04:11.136][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:04:11.137][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:04:11.139][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=82369".
biodb.TRACE[2024-12-07 16:04:11.593][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=82369).
biodb.DEBUG[2024-12-07 16:04:12.011][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:04:12.014][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/141011223a89b45316c20d1fd91b47fd.content"
biodb.TRACE[2024-12-07 16:04:12.018][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/141011223a89b45316c20d1fd91b47fd.request"
biodb.TRACE[2024-12-07 16:04:12.021][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/82369.xml"
biodb.DEBUG[2024-12-07 16:04:12.023][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:04:12.025][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:04:12.026][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:04:12.028][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:12.029][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:12.030][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:12.036][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:12.038][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:12.039][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:12.040][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:12.043][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:12.044][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:12.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:12.047][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:12.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:12.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:12.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:12.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:12.053][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:12.055][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:12.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:12.057][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:12.059][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:12.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:12.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:12.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:12.064][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:12.065][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:12.066][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:12.067][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:12.069][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:12.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:12.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:12.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:12.074][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:12.075][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:12.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:12.078][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:12.079][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:12.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:12.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:12.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:12.084][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:12.086][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:12.087][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:12.088][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:12.089][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:12.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:12.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:12.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:12.095][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:12.096][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:12.097][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:12.098][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:12.100][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:12.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:12.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:12.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:12.105][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:12.106][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:12.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:12.109][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:12.110][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:12.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:12.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:12.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:12.115][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:12.117][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:12.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:12.119][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:12.121][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:12.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:12.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:12.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:12.126][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:12.127][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:12.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:12.129][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:12.131][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:12.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:12.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:12.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:12.137][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:12.138][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:12.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:12.140][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:12.142][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:12.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:12.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:12.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:12.147][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:12.149][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:12.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:12.151][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:12.153][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:12.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:12.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:12.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:12.158][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:12.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:12.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:12.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:12.163][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:12.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:12.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:12.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:12.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:12.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:12.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:12.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:12.172][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:12.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:12.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:12.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:12.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:12.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:12.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:12.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:12.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:12.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:12.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:12.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:12.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:12.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:12.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:12.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:12.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:12.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:12.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:12.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:12.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:12.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:12.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:12.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:12.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:12.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:12.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:12.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:12.207][self$createEntryFromContent] Accession numbers: 82369.
biodb.TRACE[2024-12-07 16:04:12.208][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:12.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:12.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:12.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:12.213][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:12.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:12.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:12.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:12.218][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:12.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:12.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:12.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:12.223][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:12.224][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:12.225][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:12.231][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:12.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:12.233][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:12.234][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:12.236][private$loadEntries] Creating entries from ids [1]: "90204".
biodb.DEBUG[2024-12-07 16:04:12.237][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:04:12.239][cch$loadFileContent] Trying to load 1 files from cache: [1]: "90204".
biodb.TRACE[2024-12-07 16:04:12.240][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:04:12.242][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:04:12.243][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:04:12.244][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:04:12.245][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:04:12.247][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:04:12.250][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:12.251][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:12.252][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:12.258][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:12.259][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:12.260][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:12.261][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:12.263][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=90204".
biodb.DEBUG[2024-12-07 16:04:12.266][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:04:12.267][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:04:12.269][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=90204".
biodb.TRACE[2024-12-07 16:04:12.713][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=90204).
biodb.DEBUG[2024-12-07 16:04:13.133][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:04:13.135][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bd50d349ae7e6e2bbccffc7e4e5f18de.content"
biodb.TRACE[2024-12-07 16:04:13.140][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bd50d349ae7e6e2bbccffc7e4e5f18de.request"
biodb.TRACE[2024-12-07 16:04:13.143][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/90204.xml"
biodb.DEBUG[2024-12-07 16:04:13.145][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:04:13.146][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:04:13.148][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:04:13.150][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:13.151][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:13.152][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:13.158][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:13.159][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:13.160][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:13.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:13.164][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:13.165][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:13.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:13.168][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:13.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:13.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:13.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:13.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:13.174][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:13.176][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:13.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:13.178][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:13.179][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:13.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:13.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:13.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:13.185][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:13.186][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:13.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:13.188][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:13.190][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:13.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:13.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:13.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:13.195][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:13.197][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:13.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:13.199][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:13.201][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:13.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:13.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:13.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:13.206][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:13.207][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:13.208][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:13.209][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:13.211][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:13.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:13.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:13.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:13.216][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:13.217][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:13.219][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:13.220][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:13.221][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:13.223][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:13.224][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:13.225][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:13.227][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:13.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:13.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:13.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:13.232][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:13.233][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:13.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:13.235][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:13.237][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:13.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:13.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:13.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:13.242][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:13.243][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:13.245][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:13.246][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:13.248][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:13.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:13.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:13.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:13.253][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:13.254][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:13.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:13.256][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:13.258][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:13.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:13.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:13.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:13.263][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:13.264][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:13.266][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:13.267][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:13.268][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:13.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:13.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:13.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:13.284][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:13.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:13.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:13.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:13.290][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:13.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:13.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:13.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:13.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:13.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:13.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:13.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:13.300][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:13.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:13.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:13.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:13.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:13.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:13.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:13.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:13.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:13.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:13.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:13.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:13.314][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:13.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:13.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:13.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:13.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:13.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:13.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:13.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:13.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:13.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:13.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:13.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:13.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:13.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:13.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:13.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:13.334][self$createEntryFromContent] Accession numbers: 90204.
biodb.TRACE[2024-12-07 16:04:13.336][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:13.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:13.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:13.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:13.341][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:13.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:13.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:13.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:13.346][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:13.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:13.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:13.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:13.350][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:13.352][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:13.353][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:13.359][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:13.360][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:13.361][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:13.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:13.364][private$loadEntries] Creating entries from ids [1]: "132793".
biodb.DEBUG[2024-12-07 16:04:13.365][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:04:13.367][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132793".
biodb.TRACE[2024-12-07 16:04:13.369][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:04:13.370][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:04:13.371][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:04:13.372][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:04:13.374][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:04:13.375][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:04:13.378][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:13.379][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:13.380][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:13.386][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:13.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:13.389][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:13.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:13.391][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132793".
biodb.DEBUG[2024-12-07 16:04:13.395][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:04:13.396][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:04:13.398][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132793".
biodb.TRACE[2024-12-07 16:04:13.849][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132793).
biodb.DEBUG[2024-12-07 16:04:14.270][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:04:14.272][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a797bec3bbec3ca7a5b4b96140b735a3.content"
biodb.TRACE[2024-12-07 16:04:14.277][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a797bec3bbec3ca7a5b4b96140b735a3.request"
biodb.TRACE[2024-12-07 16:04:14.280][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132793.xml"
biodb.DEBUG[2024-12-07 16:04:14.282][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:04:14.283][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:04:14.284][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:04:14.286][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:14.288][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:14.289][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:14.295][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:14.296][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:14.297][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:14.298][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:14.301][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:14.302][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:14.303][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:14.305][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:14.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:14.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:14.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:14.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:14.311][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:14.312][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:14.314][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:14.315][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:14.316][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:14.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:14.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:14.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:14.322][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:14.323][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:14.324][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:14.325][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:14.327][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:14.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:14.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:14.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:14.332][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:14.333][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:14.334][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:14.336][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:14.337][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:14.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:14.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:14.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:14.342][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:14.343][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:14.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:14.346][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:14.347][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:14.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:14.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:14.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:14.352][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:14.354][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:14.355][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:14.356][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:14.358][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:14.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:14.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:14.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:14.363][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:14.364][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:14.365][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:14.366][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:14.368][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:14.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:14.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:14.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:14.373][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:14.374][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:14.375][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:14.376][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:14.378][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:14.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:14.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:14.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:14.383][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:14.384][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:14.386][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:14.387][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:14.388][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:14.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:14.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:14.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:14.394][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:14.395][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:14.396][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:14.397][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:14.399][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:14.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:14.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:14.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:14.404][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:14.405][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:14.406][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:14.407][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:14.409][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:14.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:14.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:14.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:14.414][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:14.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:14.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:14.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:14.419][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:14.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:14.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:14.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:14.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:14.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:14.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:14.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:14.429][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:14.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:14.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:14.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:14.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:14.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:14.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:14.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:14.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:14.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:14.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:14.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:14.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:14.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:14.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:14.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:14.449][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:14.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:14.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:14.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:14.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:14.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:14.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:14.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:14.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:14.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:14.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:14.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:14.464][self$createEntryFromContent] Accession numbers: 132793.
biodb.TRACE[2024-12-07 16:04:14.465][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:14.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:14.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:14.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:14.470][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:14.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:14.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:14.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:14.475][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:14.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:14.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:14.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:14.481][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:04:14.482][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:14.484][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:14.485][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:14.491][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:14.492][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:14.493][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:14.494][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:14.496][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:14.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:14.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:14.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:14.501][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:14.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:14.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:14.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:14.506][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:14.507][private$selectFields]
biodb.TRACE[2024-12-07 16:04:14.508][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:04:14.509][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:04:14.510][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:14.512][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:14.513][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:14.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:14.515][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:14.516][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:14.518][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:14.519][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:14.520][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:14.521][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:14.523][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:14.524][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:14.525][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:14.526][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:14.527][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:14.529][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:04:14.530][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:14.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:14.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:14.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:14.535][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:14.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:14.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:14.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:14.540][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:14.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:14.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:14.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:14.545][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65530].
biodb.DEBUG[2024-12-07 16:04:14.547][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:14.548][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:14.549][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:14.555][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:14.556][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:14.558][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:14.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:14.560][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:14.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:14.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:14.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:14.565][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:14.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:14.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:14.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:14.578][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:14.580][private$selectFields]
biodb.TRACE[2024-12-07 16:04:14.581][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:04:14.582][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:04:14.583][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:14.585][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:14.586][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:14.587][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:14.588][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:14.590][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:14.591][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:14.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:14.593][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:14.595][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:14.596][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:14.597][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:14.598][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:14.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:14.601][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:14.602][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:04:14.603][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:14.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:14.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:14.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:14.608][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:14.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:14.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:14.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:14.613][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:14.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:14.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:14.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:14.619][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [90204].
biodb.DEBUG[2024-12-07 16:04:14.620][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:14.621][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:14.622][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:14.628][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:14.630][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:14.631][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:14.632][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:14.633][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:14.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:14.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:14.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:14.638][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:14.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:14.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:14.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:14.643][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:14.644][private$selectFields]
biodb.TRACE[2024-12-07 16:04:14.646][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:04:14.647][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:04:14.648][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:14.649][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:14.650][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:14.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:14.653][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:14.654][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:14.655][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:14.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:14.658][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:14.659][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:14.660][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:14.662][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:14.663][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:14.664][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:14.665][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:14.667][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:04:14.668][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:14.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:14.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:14.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:14.673][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:14.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:14.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:14.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:14.678][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:14.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:14.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:14.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:14.683][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132793].
biodb.DEBUG[2024-12-07 16:04:14.684][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:04:14.686][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:04:14.688][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:14.689][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:14.690][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:14.696][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:14.698][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:14.699][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:14.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:14.703][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:04:14.708][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:04:14.709][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:04:14.711][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-12-07 16:04:15.128][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-12-07 16:04:15.543][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:04:15.546][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9686ce9c957a368dd8f5b4cc9c5b15b3.content"
biodb.TRACE[2024-12-07 16:04:15.551][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9686ce9c957a368dd8f5b4cc9c5b15b3.request"
biodb.DEBUG[2024-12-07 16:04:15.554][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:15.556][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:15.557][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:15.564][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:15.565][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:15.566][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:15.567][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:15.569][private$loadEntries] Creating entries from ids [1]: "131378".
biodb.DEBUG[2024-12-07 16:04:15.570][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:04:15.572][cch$loadFileContent] Trying to load 1 files from cache: [1]: "131378".
biodb.TRACE[2024-12-07 16:04:15.574][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:04:15.576][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:04:15.577][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:04:15.579][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:04:15.580][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:04:15.581][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:04:15.585][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:15.586][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:15.587][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:15.594][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:15.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:15.596][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:15.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:15.599][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=131378".
biodb.DEBUG[2024-12-07 16:04:15.603][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:04:15.604][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:04:15.606][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=131378".
biodb.TRACE[2024-12-07 16:04:16.036][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=131378).
biodb.DEBUG[2024-12-07 16:04:16.455][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:04:16.457][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5b759b1dd2dc96585e60782e41aa0772.content"
biodb.TRACE[2024-12-07 16:04:16.462][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5b759b1dd2dc96585e60782e41aa0772.request"
biodb.TRACE[2024-12-07 16:04:16.465][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/131378.xml"
biodb.DEBUG[2024-12-07 16:04:16.467][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:04:16.468][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:04:16.470][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:04:16.472][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:16.473][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:16.474][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:16.481][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:16.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:16.483][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:16.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:16.487][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:16.489][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:16.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:16.491][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:16.492][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:16.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:16.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:16.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:16.498][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:16.499][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:16.500][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:16.501][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:16.503][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:16.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:16.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:16.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:16.508][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:16.510][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:16.511][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:16.512][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:16.513][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:16.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:16.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:16.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:16.519][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:16.520][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:16.521][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:16.522][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:16.524][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:16.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:16.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:16.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:16.529][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:16.530][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:16.531][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:16.533][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:16.534][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:16.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:16.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:16.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:16.539][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:16.541][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:16.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:16.543][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:16.545][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:16.546][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:16.547][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:16.548][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:16.550][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:16.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:16.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:16.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:16.555][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:16.557][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:16.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:16.559][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:16.561][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:16.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:16.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:16.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:16.566][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:16.567][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:16.568][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:16.569][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:16.571][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:16.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:16.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:16.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:16.576][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:16.578][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:16.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:16.580][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:16.582][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:16.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:16.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:16.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:16.587][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:16.588][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:16.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:16.591][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:16.592][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:16.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:16.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:16.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:16.597][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:16.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:16.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:16.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:16.602][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:16.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:16.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:16.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:16.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:16.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:16.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:16.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:16.613][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:16.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:16.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:16.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:16.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:16.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:16.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:16.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:16.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:16.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:16.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:16.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:16.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:16.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:16.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:16.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:16.633][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:16.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:16.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:16.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:16.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:16.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:16.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:16.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:16.643][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:16.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:16.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:16.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:16.648][self$createEntryFromContent] Accession numbers: 131378.
biodb.TRACE[2024-12-07 16:04:16.650][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:16.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:16.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:16.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:16.654][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:16.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:16.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:16.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:16.659][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:16.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:16.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:16.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:16.665][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:16.666][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:16.667][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:16.673][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:16.674][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:16.675][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:16.676][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:16.688][private$loadEntries] Creating entries from ids [1]: "214202".
biodb.DEBUG[2024-12-07 16:04:16.690][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:04:16.692][cch$loadFileContent] Trying to load 1 files from cache: [1]: "214202".
biodb.TRACE[2024-12-07 16:04:16.694][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:04:16.695][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:04:16.696][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:04:16.698][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:04:16.699][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:04:16.700][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:04:16.703][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:16.704][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:16.706][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:16.712][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:16.713][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:16.714][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:16.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:16.717][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=214202".
biodb.DEBUG[2024-12-07 16:04:16.720][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:04:16.721][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:04:16.723][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=214202".
biodb.TRACE[2024-12-07 16:04:17.173][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=214202).
biodb.DEBUG[2024-12-07 16:04:17.591][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:04:17.593][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf9a3fb7c59af59e06fd510ceb170574.content"
biodb.TRACE[2024-12-07 16:04:17.598][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf9a3fb7c59af59e06fd510ceb170574.request"
biodb.TRACE[2024-12-07 16:04:17.601][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/214202.xml"
biodb.DEBUG[2024-12-07 16:04:17.603][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:04:17.605][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:04:17.606][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:04:17.608][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:17.609][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:17.610][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:17.617][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:17.618][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:17.619][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:17.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:17.623][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:17.625][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:17.626][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:17.627][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:17.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:17.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:17.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:17.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:17.634][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:17.636][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:17.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:17.638][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:17.640][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:17.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:17.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:17.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:17.645][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:17.646][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:17.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:17.649][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:17.651][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:17.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:17.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:17.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:17.656][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:17.658][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:17.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:17.660][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:17.662][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:17.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:17.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:17.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:17.667][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:17.668][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:17.669][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:17.670][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:17.672][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:17.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:17.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:17.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:17.677][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:17.678][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:17.680][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:17.681][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:17.682][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:17.684][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:17.685][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:17.686][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:17.688][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:17.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:17.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:17.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:17.693][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:17.694][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:17.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:17.696][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:17.698][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:17.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:17.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:17.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:17.703][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:17.705][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:17.706][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:17.707][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:17.709][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:17.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:17.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:17.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:17.714][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:17.715][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:17.716][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:17.717][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:17.719][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:17.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:17.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:17.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:17.724][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:17.726][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:17.727][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:17.728][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:17.729][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:17.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:17.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:17.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:17.735][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:17.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:17.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:17.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:17.740][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:17.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:17.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:17.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:17.745][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:17.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:17.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:17.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:17.750][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:17.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:17.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:17.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:17.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:17.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:17.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:17.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:17.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:17.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:17.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:17.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:17.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:17.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:17.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:17.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:17.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:17.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:17.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:17.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:17.775][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:17.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:17.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:17.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:17.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:17.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:17.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:17.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:17.785][self$createEntryFromContent] Accession numbers: 214202.
biodb.TRACE[2024-12-07 16:04:17.787][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:17.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:17.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:17.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:17.792][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:17.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:17.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:17.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:17.797][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:17.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:17.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:17.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:17.803][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:04:17.807][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:04:17.809][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:04:17.811][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-12-07 16:04:18.230][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-12-07 16:04:18.646][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:04:18.649][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5d833e77a1be58060d0c3916a1e1b293.content"
biodb.TRACE[2024-12-07 16:04:18.654][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5d833e77a1be58060d0c3916a1e1b293.request"
biodb.DEBUG[2024-12-07 16:04:18.657][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:18.658][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:18.659][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:18.665][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:18.666][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:18.668][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:18.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:18.670][private$loadEntries] Creating entries from ids [1]: "51836".
biodb.DEBUG[2024-12-07 16:04:18.671][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:04:18.673][cch$loadFileContent] Trying to load 1 files from cache: [1]: "51836".
biodb.TRACE[2024-12-07 16:04:18.675][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:04:18.676][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:04:18.678][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:04:18.679][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:04:18.680][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:04:18.681][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:04:18.684][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:18.686][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:18.687][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:18.693][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:18.694][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:18.695][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:18.696][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:18.698][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51836".
biodb.DEBUG[2024-12-07 16:04:18.701][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:04:18.702][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:04:18.704][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51836".
biodb.TRACE[2024-12-07 16:04:19.147][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51836).
biodb.DEBUG[2024-12-07 16:04:19.564][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:04:19.567][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1fe2079ad59bca4bc82b2cd14ed8e8a1.content"
biodb.TRACE[2024-12-07 16:04:19.613][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1fe2079ad59bca4bc82b2cd14ed8e8a1.request"
biodb.TRACE[2024-12-07 16:04:19.616][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51836.xml"
biodb.DEBUG[2024-12-07 16:04:19.618][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:04:19.620][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:04:19.621][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:04:19.623][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:19.625][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:19.626][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:19.632][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:19.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:19.635][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:19.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:19.638][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:19.640][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:19.641][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:19.643][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:19.644][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:19.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:19.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:19.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:19.649][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:19.651][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:19.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:19.653][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:19.655][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:19.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:19.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:19.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:19.660][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:19.661][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:19.662][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:19.664][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:19.665][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:19.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:19.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:19.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:19.670][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:19.672][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:19.673][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:19.674][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:19.676][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:19.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:19.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:19.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:19.681][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:19.682][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:19.683][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:19.685][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:19.686][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:19.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:19.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:19.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:19.691][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:19.693][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:19.694][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:19.695][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:19.696][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:19.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:19.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:19.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:19.702][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:19.703][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:19.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:19.705][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:19.707][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:19.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:19.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:19.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:19.727][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:19.728][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:19.729][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:19.731][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:19.732][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:19.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:19.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:19.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:19.737][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:19.739][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:19.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:19.741][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:19.743][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:19.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:19.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:19.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:19.748][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:19.749][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:19.751][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:19.752][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:19.753][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:19.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:19.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:19.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:19.759][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:19.760][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:19.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:19.762][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:19.764][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:19.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:19.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:19.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:19.769][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:19.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:19.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:19.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:19.774][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:19.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:19.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:19.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:19.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:19.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:19.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:19.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:19.784][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:19.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:19.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:19.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:19.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:19.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:19.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:19.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:19.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:19.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:19.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:19.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:19.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:19.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:19.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:19.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:19.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:19.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:19.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:19.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:19.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:19.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:19.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:19.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:19.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:19.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:19.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:19.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:19.820][self$createEntryFromContent] Accession numbers: 51836.
biodb.TRACE[2024-12-07 16:04:19.821][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:19.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:19.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:19.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:19.826][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:19.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:19.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:19.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:19.831][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:19.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:19.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:19.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:19.836][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:19.837][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:19.838][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:19.845][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:19.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:19.847][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:19.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:19.850][private$loadEntries] Creating entries from ids [1]: "51837".
biodb.DEBUG[2024-12-07 16:04:19.851][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:04:19.853][cch$loadFileContent] Trying to load 1 files from cache: [1]: "51837".
biodb.TRACE[2024-12-07 16:04:19.855][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:04:19.856][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:04:19.857][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:04:19.859][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:04:19.860][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:04:19.861][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:04:19.865][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:19.866][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:19.867][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:19.873][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:19.875][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:19.876][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:19.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:19.879][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51837".
biodb.DEBUG[2024-12-07 16:04:19.882][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:04:19.884][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:04:19.885][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51837".
biodb.TRACE[2024-12-07 16:04:20.325][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51837).
biodb.DEBUG[2024-12-07 16:04:20.746][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:04:20.749][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1588f004fb5de8667ae1af7433b2932e.content"
biodb.TRACE[2024-12-07 16:04:20.753][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1588f004fb5de8667ae1af7433b2932e.request"
biodb.TRACE[2024-12-07 16:04:20.756][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51837.xml"
biodb.DEBUG[2024-12-07 16:04:20.758][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:04:20.759][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:04:20.761][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:04:20.763][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:20.764][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:20.765][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:20.771][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:20.772][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:20.773][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:20.774][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:20.777][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:20.778][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:20.780][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:20.781][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:20.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:20.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:20.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:20.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:20.787][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:20.788][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:20.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:20.791][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:20.792][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:20.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:20.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:20.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:20.797][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:20.799][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:20.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:20.801][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:20.802][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:20.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:20.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:20.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:20.807][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:20.809][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:20.810][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:20.811][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:20.812][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:20.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:20.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:20.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:20.817][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:20.819][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:20.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:20.821][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:20.823][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:20.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:20.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:20.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:20.828][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:20.829][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:20.830][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:20.831][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:20.833][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:20.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:20.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:20.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:20.838][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:20.839][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:20.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:20.841][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:20.843][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:20.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:20.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:20.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:20.848][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:20.849][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:20.850][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:20.851][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:20.853][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:20.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:20.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:20.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:20.858][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:20.859][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:20.860][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:20.862][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:20.863][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:20.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:20.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:20.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:20.868][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:20.870][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:20.871][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:20.872][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:20.873][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:20.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:20.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:20.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:20.879][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:20.880][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:20.881][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:20.882][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:20.884][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:20.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:20.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:20.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:20.889][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:20.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:20.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:20.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:20.894][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:20.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:20.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:20.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:20.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:20.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:20.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:20.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:20.904][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:20.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:20.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:20.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:20.909][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:20.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:20.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:20.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:20.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:20.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:20.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:20.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:20.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:20.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:20.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:20.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:20.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:20.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:20.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:20.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:20.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:20.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:20.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:20.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:20.934][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:20.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:20.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:20.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:20.939][self$createEntryFromContent] Accession numbers: 51837.
biodb.TRACE[2024-12-07 16:04:20.940][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:20.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:20.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:20.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:20.945][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:20.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:20.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:20.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:20.950][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:20.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:20.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:20.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:20.955][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:20.957][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:20.958][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:20.964][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:20.965][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:20.966][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:20.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:20.969][private$loadEntries] Creating entries from ids [1]: "132205".
biodb.DEBUG[2024-12-07 16:04:20.970][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:04:20.972][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132205".
biodb.TRACE[2024-12-07 16:04:20.973][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:04:20.975][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:04:20.976][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:04:20.977][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:04:20.979][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:04:20.980][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:04:20.983][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:20.984][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:20.985][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:20.991][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:20.992][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:20.994][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:20.995][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:20.996][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132205".
biodb.DEBUG[2024-12-07 16:04:21.007][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:04:21.009][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:04:21.011][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132205".
biodb.TRACE[2024-12-07 16:04:21.472][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132205).
biodb.DEBUG[2024-12-07 16:04:21.894][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:04:21.897][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bfa2ac1d845d7db5b781e9a39528bb3.content"
biodb.TRACE[2024-12-07 16:04:21.901][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bfa2ac1d845d7db5b781e9a39528bb3.request"
biodb.TRACE[2024-12-07 16:04:21.904][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132205.xml"
biodb.DEBUG[2024-12-07 16:04:21.906][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:04:21.908][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:04:21.909][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:04:21.911][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:21.912][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:21.913][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:21.920][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:21.921][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:21.922][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:21.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:21.926][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:21.927][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:21.928][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:21.930][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:21.931][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:21.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:21.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:21.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:21.936][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:21.938][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:21.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:21.940][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:21.941][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:21.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:21.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:21.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:21.947][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:21.948][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:21.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:21.950][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:21.952][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:21.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:21.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:21.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:21.957][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:21.958][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:21.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:21.961][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:21.962][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:21.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:21.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:21.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:21.968][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:21.969][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:21.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:21.971][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:21.973][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:21.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:21.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:21.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:21.978][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:21.979][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:21.981][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:21.982][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:21.984][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:21.985][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:21.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:21.988][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:21.989][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:21.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:21.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:21.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:21.995][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:21.996][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:21.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:21.998][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.000][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:22.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:22.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.006][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:22.007][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:22.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.009][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.011][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:22.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:22.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.017][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:22.018][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:22.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.020][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.022][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:22.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:22.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.027][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:22.028][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:22.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.031][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.032][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:22.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:22.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.038][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.043][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:22.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:22.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.053][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:22.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:22.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:22.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:22.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:22.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:22.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.073][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:22.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:22.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:22.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:22.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:22.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:22.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:22.088][self$createEntryFromContent] Accession numbers: 132205.
biodb.TRACE[2024-12-07 16:04:22.090][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:22.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:22.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.095][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:22.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:22.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.100][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:22.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:22.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:22.105][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:04:22.107][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:22.108][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:22.109][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:22.116][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:22.117][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:22.118][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:22.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:22.121][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.126][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.131][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:22.132][private$selectFields]
biodb.TRACE[2024-12-07 16:04:22.133][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:04:22.135][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:04:22.136][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:22.137][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.138][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.140][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.141][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.142][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.143][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.146][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.147][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:22.148][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:22.150][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.151][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.153][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.155][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:04:22.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.161][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.166][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.171][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51836].
biodb.DEBUG[2024-12-07 16:04:22.173][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:22.174][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:22.175][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:22.181][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:22.182][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:22.183][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:22.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:22.186][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.191][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.196][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:22.197][private$selectFields]
biodb.TRACE[2024-12-07 16:04:22.199][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:04:22.200][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:04:22.201][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:22.202][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.204][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.205][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.206][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.207][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.208][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.211][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.212][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:22.213][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:22.215][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.216][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.218][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.219][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:04:22.221][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.226][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.231][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.236][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51837].
biodb.DEBUG[2024-12-07 16:04:22.238][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:22.239][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:22.240][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:22.246][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:22.248][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:22.249][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:22.250][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:22.251][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.256][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.262][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:22.263][private$selectFields]
biodb.TRACE[2024-12-07 16:04:22.264][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:04:22.265][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:04:22.267][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:22.268][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.269][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.271][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.272][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.273][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.274][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.277][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.278][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:22.280][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:22.281][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.282][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.283][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.284][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.286][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:04:22.287][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.292][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.297][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.303][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132205].
biodb.DEBUG[2024-12-07 16:04:22.304][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:04:22.305][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:04:22.340][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:22.341][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:22.342][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:22.349][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:22.350][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:22.351][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:22.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:22.356][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:04:22.360][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:04:22.362][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-12-07 16:04:22.363][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:04:22.365][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-12-07 16:04:22.368][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:22.369][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:22.370][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:22.377][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:22.378][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:22.379][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:22.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:22.382][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:22.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:22.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.387][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:22.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:22.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.392][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:22.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:22.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:22.398][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:04:22.402][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:04:22.404][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-12-07 16:04:22.405][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:04:22.407][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-12-07 16:04:22.410][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:22.411][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:22.412][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:22.418][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:22.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:22.421][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:22.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:22.423][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:22.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:22.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.428][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:22.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:22.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.433][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:22.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:22.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:22.438][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:22.439][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:22.440][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:22.447][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:22.448][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:22.449][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:22.450][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:22.452][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:22.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:22.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.457][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:22.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:22.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.462][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:22.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:22.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:22.467][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:04:22.469][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:22.470][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:22.471][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:22.478][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:22.479][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:22.480][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:22.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:22.483][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.488][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.493][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:22.494][private$selectFields]
biodb.TRACE[2024-12-07 16:04:22.495][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:04:22.497][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:04:22.498][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:22.499][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.501][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.502][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.503][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.504][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.506][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.507][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.508][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.509][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:22.511][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:22.512][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.513][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.516][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.517][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:04:22.518][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.523][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.528][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.534][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2024-12-07 16:04:22.535][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:22.537][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:22.538][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:22.544][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:22.545][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:22.546][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:22.547][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:22.549][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.554][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.559][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:22.560][private$selectFields]
biodb.TRACE[2024-12-07 16:04:22.561][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:04:22.563][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:04:22.564][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:22.565][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.566][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.568][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.569][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.570][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.571][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.574][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.575][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:22.576][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:22.577][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.579][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.580][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.581][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.582][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:04:22.584][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.589][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.594][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.599][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-12-07 16:04:22.600][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:22.601][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:22.602][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:22.609][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:22.610][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:22.611][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:22.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:22.614][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.619][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.624][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:22.625][private$selectFields]
biodb.TRACE[2024-12-07 16:04:22.626][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:04:22.627][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:04:22.628][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:22.630][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.631][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.632][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.633][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.635][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.636][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.638][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.640][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:22.641][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:22.642][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.643][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.645][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.646][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.647][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:04:22.648][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.653][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.658][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.664][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2024-12-07 16:04:22.665][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:04:22.666][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:04:22.669][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:22.670][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:22.671][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:22.677][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:22.678][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:22.680][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:22.681][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:22.684][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:04:22.688][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:04:22.690][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2024-12-07 16:04:22.691][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:04:22.693][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2024-12-07 16:04:22.696][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:22.697][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:22.698][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:22.704][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:22.705][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:22.707][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:22.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:22.709][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:22.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:22.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.714][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:22.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:22.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.719][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:22.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:22.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:22.724][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:22.725][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:22.726][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:22.733][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:22.734][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:22.735][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:22.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:22.737][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:22.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:22.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.742][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:22.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:22.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.753][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:22.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:22.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:22.759][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:04:22.763][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:04:22.765][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2024-12-07 16:04:22.767][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:04:22.768][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2024-12-07 16:04:22.771][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:22.772][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:22.774][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:22.780][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:22.781][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:22.782][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:22.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:22.784][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:22.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:22.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.789][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:22.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:22.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.794][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:22.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:22.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:22.799][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:22.800][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:22.802][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:22.808][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:22.809][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:22.810][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:22.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:22.812][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:22.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:22.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.817][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:22.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:22.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.822][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:22.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:22.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:22.827][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:22.828][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:22.829][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:22.836][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:22.837][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:22.838][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:22.839][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:22.840][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:22.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:22.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.845][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:22.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:22.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.850][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:22.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:22.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:22.855][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:04:22.857][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:22.859][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:22.860][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:22.866][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:22.867][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:22.868][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:22.869][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:22.871][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.876][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.881][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:22.882][private$selectFields]
biodb.TRACE[2024-12-07 16:04:22.883][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:04:22.884][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:04:22.886][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:22.887][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.888][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.890][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.891][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.892][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.893][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.895][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.896][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.897][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:22.898][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:22.900][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.901][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.902][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.903][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.905][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:04:22.906][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.911][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.916][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.921][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-12-07 16:04:22.923][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:22.924][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:22.925][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:22.931][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:22.932][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:22.933][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:22.934][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:22.936][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.941][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.946][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:22.947][private$selectFields]
biodb.TRACE[2024-12-07 16:04:22.948][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:04:22.949][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:04:22.951][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:22.952][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.953][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.954][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.956][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.957][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.958][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.961][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.962][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:22.963][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:22.964][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.966][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.968][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.969][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:04:22.971][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.976][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.981][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:22.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:22.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:22.986][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2024-12-07 16:04:22.987][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:22.989][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:22.990][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:22.996][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:22.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:22.998][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:23.000][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:23.001][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:23.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:23.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:23.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:23.006][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:23.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:23.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:23.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:23.011][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:23.012][private$selectFields]
biodb.TRACE[2024-12-07 16:04:23.014][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:04:23.015][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:04:23.016][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:23.017][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:23.019][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:23.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:23.021][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:23.022][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:23.024][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:23.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:23.026][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:23.027][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:23.029][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:23.030][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:23.031][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:23.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:23.033][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:23.035][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:04:23.036][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:23.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:23.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:23.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:23.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:23.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:23.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:23.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:23.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:23.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:23.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:23.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:23.051][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2024-12-07 16:04:23.052][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:04:23.053][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:04:23.056][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:23.057][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:23.058][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:23.064][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:23.065][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:23.067][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:23.068][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:23.071][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:04:23.075][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:04:23.077][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2024-12-07 16:04:23.078][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:04:23.080][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2024-12-07 16:04:23.083][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:23.084][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:23.085][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:23.091][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:23.092][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:23.093][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:23.095][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:23.096][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:23.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:23.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:23.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:23.101][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:23.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:23.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:23.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:23.106][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:23.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:23.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:23.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:23.111][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:23.112][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:23.113][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:23.119][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:23.120][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:23.121][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:23.122][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:23.124][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:23.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:23.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:23.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:23.129][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:23.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:23.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:23.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:23.134][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:23.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:23.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:23.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:23.139][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:23.140][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:23.141][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:23.147][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:23.148][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:23.149][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:23.150][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:23.152][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:23.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:23.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:23.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:23.156][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:23.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:23.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:23.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:23.161][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:23.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:23.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:23.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:23.166][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:23.167][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:23.168][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:23.180][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:23.182][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:23.183][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:23.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:23.185][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:23.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:23.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:23.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:23.190][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:23.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:23.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:23.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:23.195][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:23.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:23.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:23.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:23.200][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:23.201][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:23.202][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:23.209][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:23.210][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:23.211][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:23.212][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:23.213][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:23.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:23.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:23.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:23.218][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:23.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:23.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:23.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:23.223][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:23.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:23.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:23.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:23.228][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:23.229][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:23.230][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:23.236][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:23.238][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:23.239][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:23.240][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:23.241][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:23.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:23.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:23.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:23.246][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:23.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:23.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:23.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:23.251][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:23.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:23.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:23.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:23.256][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:23.257][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:23.258][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:23.264][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:23.265][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:23.266][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:23.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:23.269][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:23.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:23.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:23.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:23.274][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:23.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:23.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:23.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:23.279][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:23.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:23.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:23.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:23.284][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:23.285][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:23.286][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:23.292][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:23.293][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:23.295][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:23.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:23.297][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:23.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:23.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:23.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:23.302][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:23.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:23.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:23.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:23.308][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:23.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:23.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:23.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:23.314][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:04:23.318][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:04:23.320][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2024-12-07 16:04:23.322][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:04:23.324][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2024-12-07 16:04:23.327][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:23.328][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:23.330][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:23.336][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:23.338][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:23.339][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:23.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:23.342][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:23.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:23.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:23.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:23.347][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:23.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:23.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:23.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:23.352][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:23.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:23.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:23.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:23.358][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:23.359][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:23.360][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:23.366][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:23.367][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:23.369][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:23.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:23.371][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:23.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:23.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:23.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:23.376][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:23.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:23.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:23.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:23.381][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:23.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:23.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:23.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:23.386][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:23.387][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:23.389][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:23.395][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:23.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:23.397][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:23.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:23.400][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:23.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:23.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:23.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:23.405][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:23.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:23.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:23.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:23.410][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:23.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:23.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:23.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:23.415][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:04:23.417][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:23.418][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:23.419][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:23.425][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:23.427][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:23.428][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:23.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:23.430][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:23.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:23.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:23.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:23.435][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:23.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:23.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:23.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:23.440][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:23.442][private$selectFields]
biodb.TRACE[2024-12-07 16:04:23.443][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:04:23.444][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:04:23.445][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:23.446][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:23.448][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:23.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:23.450][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:23.452][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:23.453][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:23.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:23.455][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:23.457][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:23.458][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:23.459][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:23.460][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:23.462][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:23.463][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:23.464][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:04:23.465][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:23.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:23.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:23.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:23.470][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:23.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:23.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:23.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:23.475][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:23.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:23.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:23.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:23.481][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-12-07 16:04:23.482][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:23.483][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:23.484][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:23.491][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:23.492][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:23.493][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:23.494][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:23.496][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:23.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:23.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:23.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:23.501][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:23.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:23.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:23.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:23.506][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:23.507][private$selectFields]
biodb.TRACE[2024-12-07 16:04:23.508][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:04:23.509][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:04:23.511][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:23.512][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:23.513][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:23.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:23.516][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:23.517][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:23.518][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:23.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:23.521][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:23.522][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:23.523][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:23.524][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:23.526][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:23.527][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:23.528][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:23.530][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:04:23.531][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:23.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:23.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:23.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:23.536][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:23.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:23.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:23.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:23.541][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:23.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:23.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:23.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:23.547][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2024-12-07 16:04:23.548][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:23.549][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:23.550][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:23.556][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:23.558][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:23.559][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:23.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:23.562][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:23.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:23.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:23.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:23.567][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:23.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:23.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:23.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:23.572][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:23.573][private$selectFields]
biodb.TRACE[2024-12-07 16:04:23.574][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:04:23.575][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:04:23.576][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:23.578][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:23.579][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:23.580][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:23.582][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:23.583][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:23.584][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:23.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:23.587][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:23.588][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:23.589][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:23.590][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:23.592][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:23.593][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:23.594][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:23.595][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:04:23.597][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:23.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:23.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:23.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:23.607][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:23.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:23.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:23.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:23.613][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:23.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:23.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:23.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:23.618][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2024-12-07 16:04:23.620][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:04:23.621][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:04:23.648][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:23.649][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:23.650][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:23.656][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:23.658][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:23.659][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:23.660][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:23.663][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:04:23.668][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:04:23.669][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:04:23.672][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-12-07 16:04:24.101][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-12-07 16:04:24.519][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:04:24.522][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2b6f29bb7a7663ff23fb5e7dcae5c27f.content"
biodb.TRACE[2024-12-07 16:04:24.527][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2b6f29bb7a7663ff23fb5e7dcae5c27f.request"
biodb.DEBUG[2024-12-07 16:04:24.531][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:24.532][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:24.533][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:24.539][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:24.540][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:24.542][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:24.543][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:24.544][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:24.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:24.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:24.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:24.549][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:24.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:24.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:24.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:24.554][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:24.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:24.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:24.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:24.559][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:24.560][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:24.562][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:24.568][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:24.569][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:24.570][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:24.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:24.573][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:24.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:24.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:24.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:24.578][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:24.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:24.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:24.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:24.583][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:24.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:24.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:24.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:24.588][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:24.589][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:24.590][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:24.597][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:24.598][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:24.599][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:24.600][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:24.602][private$loadEntries] Creating entries from ids [1]: "28243".
biodb.DEBUG[2024-12-07 16:04:24.603][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:04:24.605][cch$loadFileContent] Trying to load 1 files from cache: [1]: "28243".
biodb.TRACE[2024-12-07 16:04:24.606][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:04:24.608][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:04:24.609][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:04:24.611][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:04:24.612][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:04:24.613][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:04:24.616][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:24.618][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:24.619][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:24.625][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:24.626][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:24.627][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:24.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:24.630][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=28243".
biodb.DEBUG[2024-12-07 16:04:24.634][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:04:24.635][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:04:24.637][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=28243".
biodb.TRACE[2024-12-07 16:04:25.102][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=28243).
biodb.DEBUG[2024-12-07 16:04:25.526][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:04:25.528][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/177c3a227615d232b537605885883911.content"
biodb.TRACE[2024-12-07 16:04:25.533][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/177c3a227615d232b537605885883911.request"
biodb.TRACE[2024-12-07 16:04:25.536][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/28243.xml"
biodb.DEBUG[2024-12-07 16:04:25.538][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:04:25.540][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:04:25.541][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:04:25.543][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:25.544][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:25.545][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:25.552][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:25.553][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:25.554][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:25.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:25.558][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:25.559][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:25.561][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:25.562][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:25.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:25.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:25.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:25.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:25.568][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:25.570][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:25.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:25.572][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:25.574][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:25.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:25.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:25.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:25.579][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:25.580][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:25.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:25.583][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:25.585][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:25.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:25.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:25.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:25.590][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:25.591][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:25.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:25.593][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:25.595][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:25.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:25.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:25.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:25.600][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:25.601][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:25.603][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:25.604][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:25.605][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:25.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:25.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:25.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:25.611][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:25.612][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:25.613][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:25.614][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:25.616][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:25.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:25.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:25.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:25.621][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:25.622][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:25.624][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:25.625][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:25.626][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:25.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:25.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:25.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:25.631][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:25.633][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:25.634][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:25.635][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:25.637][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:25.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:25.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:25.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:25.642][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:25.643][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:25.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:25.645][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:25.647][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:25.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:25.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:25.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:25.653][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:25.654][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:25.655][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:25.656][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:25.658][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:25.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:25.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:25.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:25.663][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:25.664][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:25.666][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:25.667][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:25.668][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:25.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:25.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:25.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:25.673][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:25.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:25.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:25.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:25.678][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:25.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:25.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:25.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:25.683][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:25.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:25.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:25.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:25.688][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:25.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:25.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:25.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:25.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:25.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:25.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:25.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:25.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:25.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:25.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:25.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:25.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:25.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:25.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:25.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:25.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:25.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:25.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:25.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:25.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:25.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:25.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:25.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:25.719][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:25.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:25.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:25.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:25.724][self$createEntryFromContent] Accession numbers: 28243.
biodb.TRACE[2024-12-07 16:04:25.725][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:25.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:25.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:25.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:25.730][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:25.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:25.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:25.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:25.735][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:25.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:25.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:25.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:25.740][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:25.742][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:25.743][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:25.749][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:25.750][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:25.751][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:25.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:25.754][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:25.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:25.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:25.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:25.759][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:25.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:25.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:25.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:25.764][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:25.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:25.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:25.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:25.781][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:25.782][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:25.783][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:25.789][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:25.791][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:25.792][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:25.793][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:25.794][private$loadEntries] Creating entries from ids [1]: "70786".
biodb.DEBUG[2024-12-07 16:04:25.796][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:04:25.798][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70786".
biodb.TRACE[2024-12-07 16:04:25.799][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:04:25.801][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:04:25.802][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:04:25.803][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:04:25.805][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:04:25.806][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:04:25.809][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:25.810][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:25.811][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:25.818][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:25.819][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:25.820][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:25.821][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:25.823][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70786".
biodb.DEBUG[2024-12-07 16:04:25.827][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:04:25.828][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:04:25.830][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70786".
biodb.TRACE[2024-12-07 16:04:26.272][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70786).
biodb.DEBUG[2024-12-07 16:04:26.689][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:04:26.691][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ea24f2a708fc4a90f6eff28b49d993c4.content"
biodb.TRACE[2024-12-07 16:04:26.696][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ea24f2a708fc4a90f6eff28b49d993c4.request"
biodb.TRACE[2024-12-07 16:04:26.699][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70786.xml"
biodb.DEBUG[2024-12-07 16:04:26.701][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:04:26.702][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:04:26.704][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:04:26.706][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:26.707][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:26.708][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:26.714][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:26.715][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:26.716][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:26.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:26.720][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:26.721][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:26.723][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:26.724][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:26.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:26.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:26.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:26.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:26.730][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:26.731][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:26.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:26.734][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:26.735][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:26.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:26.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:26.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:26.740][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:26.742][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:26.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:26.744][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:26.746][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:26.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:26.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:26.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:26.751][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:26.752][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:26.753][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:26.754][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:26.756][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:26.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:26.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:26.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:26.761][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:26.762][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:26.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:26.765][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:26.766][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:26.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:26.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:26.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:26.771][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:26.773][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:26.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:26.775][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:26.776][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:26.778][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:26.779][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:26.780][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:26.782][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:26.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:26.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:26.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:26.787][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:26.788][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:26.789][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:26.790][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:26.792][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:26.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:26.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:26.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:26.797][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:26.798][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:26.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:26.801][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:26.803][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:26.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:26.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:26.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:26.808][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:26.809][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:26.810][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:26.811][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:26.813][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:26.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:26.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:26.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:26.818][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:26.819][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:26.821][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:26.822][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:26.823][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:26.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:26.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:26.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:26.829][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:26.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:26.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:26.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:26.834][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:26.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:26.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:26.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:26.839][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:26.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:26.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:26.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:26.844][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:26.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:26.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:26.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:26.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:26.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:26.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:26.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:26.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:26.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:26.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:26.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:26.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:26.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:26.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:26.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:26.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:26.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:26.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:26.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:26.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:26.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:26.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:26.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:26.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:26.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:26.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:26.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:26.879][self$createEntryFromContent] Accession numbers: 70786.
biodb.TRACE[2024-12-07 16:04:26.880][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:26.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:26.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:26.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:26.885][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:26.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:26.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:26.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:26.890][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:26.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:26.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:26.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:26.895][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:26.896][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:26.897][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:26.903][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:26.905][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:26.906][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:26.907][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:26.908][private$loadEntries] Creating entries from ids [1]: "78144".
biodb.DEBUG[2024-12-07 16:04:26.909][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:04:26.911][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78144".
biodb.TRACE[2024-12-07 16:04:26.913][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:04:26.914][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:04:26.916][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:04:26.917][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:04:26.918][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:04:26.919][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:04:26.923][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:26.924][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:26.925][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:26.931][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:26.932][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:26.933][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:26.934][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:26.936][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78144".
biodb.DEBUG[2024-12-07 16:04:26.939][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:04:26.941][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:04:26.942][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78144".
biodb.TRACE[2024-12-07 16:04:27.373][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78144).
biodb.DEBUG[2024-12-07 16:04:27.788][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:04:27.791][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ede5a640bd42c7611e16282ef185b74.content"
biodb.TRACE[2024-12-07 16:04:27.795][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ede5a640bd42c7611e16282ef185b74.request"
biodb.TRACE[2024-12-07 16:04:27.798][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78144.xml"
biodb.DEBUG[2024-12-07 16:04:27.800][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:04:27.801][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:04:27.803][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:04:27.805][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:27.806][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:27.807][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:27.813][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:27.814][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:27.815][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:27.816][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:27.819][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:27.820][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:27.822][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:27.823][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:27.824][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:27.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:27.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:27.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:27.829][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:27.831][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:27.832][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:27.833][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:27.835][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:27.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:27.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:27.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:27.840][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:27.841][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:27.842][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:27.843][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:27.845][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:27.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:27.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:27.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:27.850][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:27.851][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:27.853][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:27.854][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:27.855][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:27.857][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:27.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:27.859][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:27.860][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:27.862][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:27.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:27.864][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:27.866][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:27.867][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:27.868][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:27.869][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:27.871][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:27.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:27.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:27.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:27.876][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:27.877][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:27.878][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:27.880][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:27.881][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:27.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:27.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:27.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:27.886][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:27.888][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:27.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:27.890][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:27.892][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:27.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:27.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:27.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:27.908][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:27.909][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:27.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:27.912][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:27.913][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:27.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:27.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:27.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:27.918][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:27.920][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:27.921][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:27.922][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:27.923][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:27.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:27.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:27.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:27.929][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:27.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:27.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:27.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:27.934][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:27.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:27.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:27.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:27.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:27.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:27.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:27.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:27.944][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:27.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:27.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:27.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:27.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:27.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:27.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:27.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:27.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:27.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:27.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:27.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:27.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:27.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:27.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:27.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:27.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:27.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:27.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:27.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:27.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:27.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:27.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:27.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:27.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:27.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:27.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:27.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:27.979][self$createEntryFromContent] Accession numbers: 78144.
biodb.TRACE[2024-12-07 16:04:27.980][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:27.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:27.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:27.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:27.985][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:27.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:27.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:27.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:27.990][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:27.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:27.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:27.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:27.995][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:04:27.997][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:27.998][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:27.999][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:28.005][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:28.006][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:28.008][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:28.009][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:28.010][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:28.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:28.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:28.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:28.015][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:28.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:28.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:28.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:28.020][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:28.021][private$selectFields]
biodb.TRACE[2024-12-07 16:04:28.023][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:04:28.024][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:04:28.025][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:28.026][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:28.027][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:28.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:28.030][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:28.031][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:28.032][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:28.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:28.035][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:28.036][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:28.037][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:28.039][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:28.040][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:28.041][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:28.042][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:28.044][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:04:28.045][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:28.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:28.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:28.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:28.050][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:28.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:28.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:28.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:28.055][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:28.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:28.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:28.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:28.060][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-12-07 16:04:28.062][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:28.063][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:28.064][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:28.070][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:28.072][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:28.073][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:28.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:28.075][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:28.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:28.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:28.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:28.080][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:28.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:28.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:28.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:28.085][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:28.087][private$selectFields]
biodb.TRACE[2024-12-07 16:04:28.088][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:04:28.089][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:04:28.090][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:28.092][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:28.093][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:28.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:28.095][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:28.097][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:28.098][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:28.099][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:28.100][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:28.102][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:28.103][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:28.104][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:28.106][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:28.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:28.108][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:28.109][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:04:28.111][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:28.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:28.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:28.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:28.116][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:28.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:28.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:28.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:28.121][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:28.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:28.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:28.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:28.127][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [28243].
biodb.DEBUG[2024-12-07 16:04:28.128][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:28.129][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:28.130][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:28.136][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:28.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:28.139][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:28.140][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:28.142][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:28.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:28.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:28.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:28.147][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:28.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:28.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:28.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:28.152][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:28.153][private$selectFields]
biodb.TRACE[2024-12-07 16:04:28.154][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:04:28.155][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:04:28.157][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:28.158][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:28.159][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:28.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:28.162][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:28.163][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:28.164][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:28.166][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:28.167][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:28.168][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:28.169][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:28.171][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:28.172][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:28.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:28.174][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:28.176][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:04:28.177][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:28.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:28.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:28.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:28.182][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:28.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:28.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:28.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:28.187][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:28.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:28.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:28.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:28.193][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [78144].
biodb.DEBUG[2024-12-07 16:04:28.194][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:04:28.195][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:04:28.198][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:28.199][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:28.200][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:28.206][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:28.207][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:28.209][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:28.210][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:28.213][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:04:28.218][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:04:28.219][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:04:28.221][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-12-07 16:04:28.679][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-12-07 16:04:29.203][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:04:29.206][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9a13652ab89a613a3b0e10d3b6cb10a0.content"
biodb.TRACE[2024-12-07 16:04:29.211][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9a13652ab89a613a3b0e10d3b6cb10a0.request"
biodb.DEBUG[2024-12-07 16:04:29.218][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:29.219][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:29.220][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:29.226][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:29.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:29.229][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:29.230][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:29.231][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:29.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:29.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:29.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:29.236][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:29.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:29.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:29.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:29.241][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:29.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:29.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:29.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:29.246][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:29.247][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:29.248][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:29.254][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:29.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:29.257][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:29.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:29.259][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:29.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:29.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:29.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:29.264][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:29.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:29.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:29.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:29.269][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:29.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:29.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:29.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:29.274][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:29.275][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:29.276][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:29.283][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:29.284][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:29.285][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:29.286][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:29.287][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:29.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:29.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:29.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:29.292][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:29.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:29.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:29.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:29.297][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:29.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:29.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:29.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:29.311][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:04:29.313][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:29.314][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:29.315][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:29.322][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:29.323][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:29.324][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:29.325][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:29.327][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:29.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:29.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:29.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:29.332][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:29.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:29.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:29.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:29.337][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:29.338][private$selectFields]
biodb.TRACE[2024-12-07 16:04:29.339][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:04:29.340][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:04:29.342][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:29.343][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:29.344][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:29.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:29.347][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:29.348][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:29.349][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:29.350][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:29.351][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:29.353][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:29.354][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:29.355][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:29.357][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:29.358][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:29.359][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:29.360][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:04:29.361][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:29.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:29.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:29.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:29.366][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:29.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:29.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:29.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:29.371][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:29.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:29.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:29.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:29.377][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-12-07 16:04:29.378][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:29.379][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:29.380][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:29.387][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:29.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:29.389][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:29.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:29.391][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:29.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:29.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:29.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:29.396][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:29.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:29.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:29.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:29.402][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:29.403][private$selectFields]
biodb.TRACE[2024-12-07 16:04:29.404][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:04:29.405][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:04:29.406][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:29.408][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:29.409][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:29.410][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:29.411][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:29.413][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:29.414][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:29.415][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:29.416][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:29.418][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:29.419][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:29.420][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:29.421][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:29.423][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:29.424][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:29.425][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:04:29.426][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:29.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:29.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:29.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:29.431][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:29.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:29.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:29.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:29.436][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:29.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:29.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:29.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:29.442][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2024-12-07 16:04:29.443][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:29.444][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:29.445][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:29.452][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:29.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:29.454][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:29.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:29.457][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:29.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:29.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:29.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:29.462][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:29.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:29.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:29.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:29.467][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:29.468][private$selectFields]
biodb.TRACE[2024-12-07 16:04:29.469][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:04:29.471][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:04:29.472][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:29.473][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:29.475][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:29.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:29.477][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:29.478][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:29.480][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:29.481][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:29.482][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:29.483][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:29.484][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:29.486][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:29.487][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:29.488][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:29.489][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:29.491][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:04:29.492][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:29.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:29.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:29.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:29.497][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:29.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:29.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:29.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:29.502][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:29.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:29.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:29.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:29.508][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2024-12-07 16:04:29.509][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:04:29.510][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:04:29.513][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:29.514][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:29.515][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:29.522][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:29.523][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:29.524][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:29.525][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:29.529][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:04:29.534][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:04:29.535][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:04:29.537][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-12-07 16:04:29.957][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-12-07 16:04:30.376][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:04:30.378][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a985300ab8a01d49254fbf993ad91279.content"
biodb.TRACE[2024-12-07 16:04:30.383][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a985300ab8a01d49254fbf993ad91279.request"
biodb.DEBUG[2024-12-07 16:04:30.388][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:30.389][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:30.390][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:30.396][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:30.397][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:30.398][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:30.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:30.401][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:30.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:30.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:30.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:30.406][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:30.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:30.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:30.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:30.411][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:30.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:30.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:30.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:30.416][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:30.417][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:30.418][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:30.424][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:30.426][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:30.427][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:30.428][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:30.429][private$loadEntries] Creating entries from ids [1]: "47739".
biodb.DEBUG[2024-12-07 16:04:30.430][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:04:30.432][cch$loadFileContent] Trying to load 1 files from cache: [1]: "47739".
biodb.TRACE[2024-12-07 16:04:30.434][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:04:30.435][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:04:30.437][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:04:30.438][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:04:30.439][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:04:30.440][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:04:30.444][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:30.445][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:30.446][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:30.452][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:30.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:30.454][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:30.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:30.457][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=47739".
biodb.DEBUG[2024-12-07 16:04:30.460][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:04:30.462][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:04:30.463][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=47739".
biodb.TRACE[2024-12-07 16:04:30.900][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=47739).
biodb.DEBUG[2024-12-07 16:04:31.319][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:04:31.321][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0dc9c92acc9df5971b3177a6daad90f3.content"
biodb.TRACE[2024-12-07 16:04:31.325][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0dc9c92acc9df5971b3177a6daad90f3.request"
biodb.TRACE[2024-12-07 16:04:31.329][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/47739.xml"
biodb.DEBUG[2024-12-07 16:04:31.330][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:04:31.332][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:04:31.333][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:04:31.335][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:31.336][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:31.338][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:31.344][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:31.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:31.346][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:31.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:31.350][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:31.351][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:31.352][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:31.354][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:31.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:31.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:31.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:31.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:31.360][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:31.362][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:31.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:31.364][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:31.366][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:31.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:31.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:31.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:31.371][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:31.372][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:31.373][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:31.374][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:31.376][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:31.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:31.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:31.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:31.381][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:31.382][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:31.384][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:31.385][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:31.386][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:31.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:31.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:31.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:31.391][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:31.393][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:31.394][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:31.395][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:31.397][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:31.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:31.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:31.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:31.402][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:31.403][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:31.404][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:31.405][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:31.407][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:31.408][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:31.410][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:31.411][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:31.412][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:31.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:31.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:31.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:31.429][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:31.430][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:31.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:31.433][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:31.434][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:31.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:31.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:31.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:31.439][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:31.441][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:31.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:31.443][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:31.445][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:31.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:31.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:31.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:31.450][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:31.451][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:31.453][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:31.454][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:31.455][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:31.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:31.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:31.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:31.460][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:31.462][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:31.463][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:31.464][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:31.466][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:31.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:31.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:31.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:31.471][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:31.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:31.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:31.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:31.476][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:31.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:31.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:31.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:31.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:31.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:31.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:31.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:31.486][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:31.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:31.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:31.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:31.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:31.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:31.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:31.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:31.496][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:31.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:31.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:31.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:31.501][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:31.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:31.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:31.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:31.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:31.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:31.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:31.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:31.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:31.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:31.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:31.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:31.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:31.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:31.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:31.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:31.521][self$createEntryFromContent] Accession numbers: 47739.
biodb.TRACE[2024-12-07 16:04:31.522][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:31.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:31.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:31.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:31.527][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:31.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:31.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:31.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:31.532][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:31.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:31.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:31.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:31.537][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:31.538][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:31.539][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:31.546][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:31.547][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:31.548][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:31.549][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:31.550][private$loadEntries] Creating entries from ids [1]: "51744".
biodb.DEBUG[2024-12-07 16:04:31.552][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:04:31.554][cch$loadFileContent] Trying to load 1 files from cache: [1]: "51744".
biodb.TRACE[2024-12-07 16:04:31.555][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:04:31.557][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:04:31.558][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:04:31.559][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:04:31.561][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:04:31.562][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:04:31.565][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:31.566][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:31.567][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:31.574][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:31.575][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:31.576][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:31.578][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:31.579][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51744".
biodb.DEBUG[2024-12-07 16:04:31.583][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:04:31.584][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:04:31.586][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51744".
biodb.TRACE[2024-12-07 16:04:32.041][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51744).
biodb.DEBUG[2024-12-07 16:04:32.459][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:04:32.462][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/34d89a621633962f5a6b9b09f1ef84ed.content"
biodb.TRACE[2024-12-07 16:04:32.466][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/34d89a621633962f5a6b9b09f1ef84ed.request"
biodb.TRACE[2024-12-07 16:04:32.470][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51744.xml"
biodb.DEBUG[2024-12-07 16:04:32.471][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:04:32.473][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:04:32.474][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:04:32.476][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:32.478][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:32.479][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:32.485][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:32.486][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:32.487][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:32.488][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:32.491][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:32.492][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:32.494][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:32.495][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:32.496][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:32.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:32.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:32.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:32.502][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:32.503][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:32.504][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:32.505][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:32.507][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:32.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:32.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:32.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:32.512][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:32.513][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:32.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:32.516][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:32.517][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:32.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:32.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:32.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:32.522][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:32.524][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:32.525][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:32.526][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:32.528][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:32.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:32.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:32.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:32.533][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:32.534][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:32.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:32.536][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:32.538][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:32.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:32.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:32.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:32.543][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:32.544][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:32.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:32.547][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:32.548][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:32.550][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:32.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:32.552][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:32.554][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:32.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:32.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:32.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:32.559][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:32.560][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:32.561][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:32.562][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:32.564][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:32.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:32.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:32.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:32.569][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:32.570][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:32.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:32.573][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:32.575][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:32.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:32.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:32.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:32.580][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:32.581][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:32.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:32.583][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:32.585][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:32.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:32.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:32.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:32.590][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:32.591][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:32.593][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:32.594][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:32.595][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:32.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:32.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:32.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:32.600][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:32.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:32.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:32.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:32.605][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:32.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:32.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:32.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:32.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:32.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:32.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:32.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:32.615][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:32.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:32.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:32.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:32.621][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:32.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:32.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:32.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:32.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:32.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:32.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:32.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:32.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:32.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:32.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:32.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:32.636][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:32.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:32.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:32.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:32.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:32.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:32.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:32.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:32.646][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:32.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:32.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:32.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:32.651][self$createEntryFromContent] Accession numbers: 51744.
biodb.TRACE[2024-12-07 16:04:32.652][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:32.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:32.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:32.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:32.658][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:32.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:32.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:32.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:32.663][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:32.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:32.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:32.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:32.668][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:32.669][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:32.670][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:32.676][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:32.678][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:32.679][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:32.680][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:32.681][private$loadEntries] Creating entries from ids [1]: "64473".
biodb.DEBUG[2024-12-07 16:04:32.683][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:04:32.685][cch$loadFileContent] Trying to load 1 files from cache: [1]: "64473".
biodb.TRACE[2024-12-07 16:04:32.686][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:04:32.688][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:04:32.689][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:04:32.690][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:04:32.692][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:04:32.693][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:04:32.696][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:32.697][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:32.699][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:32.705][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:32.706][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:32.707][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:32.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:32.710][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64473".
biodb.DEBUG[2024-12-07 16:04:32.714][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:04:32.724][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:04:32.726][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64473".
biodb.TRACE[2024-12-07 16:04:33.182][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64473).
biodb.DEBUG[2024-12-07 16:04:33.601][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:04:33.604][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bc75e6e381d0b772364b3d17c4c0f5e.content"
biodb.TRACE[2024-12-07 16:04:33.608][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bc75e6e381d0b772364b3d17c4c0f5e.request"
biodb.TRACE[2024-12-07 16:04:33.612][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64473.xml"
biodb.DEBUG[2024-12-07 16:04:33.613][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:04:33.615][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:04:33.616][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:04:33.618][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:33.619][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:33.621][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:33.627][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:33.628][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:33.629][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:33.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:33.633][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:33.634][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:33.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:33.636][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:33.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:33.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:33.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:33.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:33.643][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:33.644][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:33.645][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:33.647][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:33.648][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:33.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:33.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:33.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:33.653][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:33.654][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:33.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:33.657][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:33.658][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:33.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:33.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:33.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:33.663][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:33.665][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:33.666][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:33.667][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:33.668][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:33.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:33.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:33.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:33.673][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:33.675][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:33.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:33.677][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:33.679][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:33.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:33.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:33.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:33.684][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:33.685][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:33.686][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:33.687][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:33.689][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:33.690][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:33.691][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:33.692][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:33.694][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:33.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:33.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:33.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:33.699][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:33.700][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:33.702][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:33.703][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:33.704][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:33.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:33.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:33.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:33.709][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:33.711][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:33.712][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:33.713][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:33.715][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:33.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:33.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:33.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:33.720][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:33.721][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:33.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:33.723][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:33.725][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:33.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:33.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:33.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:33.730][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:33.731][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:33.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:33.734][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:33.735][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:33.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:33.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:33.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:33.741][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:33.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:33.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:33.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:33.746][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:33.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:33.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:33.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:33.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:33.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:33.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:33.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:33.755][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:33.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:33.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:33.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:33.761][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:33.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:33.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:33.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:33.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:33.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:33.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:33.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:33.771][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:33.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:33.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:33.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:33.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:33.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:33.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:33.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:33.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:33.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:33.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:33.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:33.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:33.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:33.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:33.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:33.791][self$createEntryFromContent] Accession numbers: 64473.
biodb.TRACE[2024-12-07 16:04:33.792][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:33.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:33.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:33.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:33.797][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:33.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:33.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:33.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:33.802][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:33.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:33.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:33.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:33.807][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:33.808][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:33.810][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:33.816][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:33.817][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:33.818][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:33.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:33.821][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:33.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:33.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:33.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:33.826][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:33.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:33.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:33.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:33.831][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:33.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:33.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:33.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:33.836][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:33.837][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:33.838][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:33.844][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:33.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:33.846][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:33.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:33.849][private$loadEntries] Creating entries from ids [1]: "75244".
biodb.DEBUG[2024-12-07 16:04:33.850][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:04:33.852][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75244".
biodb.TRACE[2024-12-07 16:04:33.854][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:04:33.855][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:04:33.857][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:04:33.858][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:04:33.859][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:04:33.860][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:04:33.864][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:33.865][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:33.866][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:33.872][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:33.874][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:33.875][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:33.876][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:33.877][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75244".
biodb.DEBUG[2024-12-07 16:04:33.881][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:04:33.882][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:04:33.884][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75244".
biodb.TRACE[2024-12-07 16:04:34.345][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75244).
biodb.DEBUG[2024-12-07 16:04:34.763][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:04:34.766][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cae81bf9939177869251c540dee6df85.content"
biodb.TRACE[2024-12-07 16:04:34.770][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cae81bf9939177869251c540dee6df85.request"
biodb.TRACE[2024-12-07 16:04:34.773][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75244.xml"
biodb.DEBUG[2024-12-07 16:04:34.775][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:04:34.777][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:04:34.778][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:04:34.780][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:34.781][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:34.782][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:34.789][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:34.790][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:34.791][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:34.792][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:34.795][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:34.797][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:34.798][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:34.799][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:34.800][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:34.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:34.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:34.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:34.806][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:34.807][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:34.808][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:34.809][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:34.811][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:34.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:34.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:34.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:34.816][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:34.817][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:34.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:34.820][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:34.821][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:34.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:34.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:34.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:34.827][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:34.828][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:34.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:34.831][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:34.832][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:34.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:34.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:34.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:34.837][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:34.839][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:34.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:34.842][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:34.844][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:34.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:34.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:34.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:34.849][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:34.850][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:34.851][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:34.852][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:34.854][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:34.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:34.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:34.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:34.859][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:34.860][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:34.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:34.863][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:34.864][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:34.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:34.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:34.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:34.869][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:34.871][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:34.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:34.873][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:34.874][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:34.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:34.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:34.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:34.880][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:34.881][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:34.882][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:34.883][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:34.885][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:34.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:34.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:34.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:34.902][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:34.903][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:34.904][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:34.906][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:34.907][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:34.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:34.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:34.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:34.912][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:34.914][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:34.915][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:34.916][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:34.918][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:34.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:34.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:34.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:34.923][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:34.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:34.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:34.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:34.928][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:34.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:34.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:34.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:34.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:34.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:34.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:34.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:34.937][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:34.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:34.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:34.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:34.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:34.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:34.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:34.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:34.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:34.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:34.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:34.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:34.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:34.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:34.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:34.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:34.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:34.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:34.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:34.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:34.962][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:34.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:34.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:34.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:34.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:34.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:34.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:34.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:34.972][self$createEntryFromContent] Accession numbers: 75244.
biodb.TRACE[2024-12-07 16:04:34.973][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:34.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:34.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:34.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:34.978][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:34.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:34.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:34.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:34.983][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:34.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:34.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:34.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:34.988][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:34.989][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:34.990][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:34.996][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:34.998][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:34.999][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:35.000][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:35.001][private$loadEntries] Creating entries from ids [1]: "75311".
biodb.DEBUG[2024-12-07 16:04:35.002][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:04:35.004][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75311".
biodb.TRACE[2024-12-07 16:04:35.006][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:04:35.007][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:04:35.009][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:04:35.010][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:04:35.011][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:04:35.013][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:04:35.016][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:35.017][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:35.018][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:35.024][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:35.026][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:35.027][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:35.028][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:35.029][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75311".
biodb.DEBUG[2024-12-07 16:04:35.033][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:04:35.034][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:04:35.036][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75311".
biodb.TRACE[2024-12-07 16:04:35.494][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75311).
biodb.DEBUG[2024-12-07 16:04:35.911][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:04:35.913][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4e5c0f0d646c796bdaff17cc90a3658d.content"
biodb.TRACE[2024-12-07 16:04:35.918][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4e5c0f0d646c796bdaff17cc90a3658d.request"
biodb.TRACE[2024-12-07 16:04:35.921][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75311.xml"
biodb.DEBUG[2024-12-07 16:04:35.923][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:04:35.924][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:04:35.926][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:04:35.928][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:35.929][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:35.930][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:35.936][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:35.937][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:35.938][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:35.940][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:35.942][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:35.944][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:35.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:35.946][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:35.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:35.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:35.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:35.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:35.953][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:35.954][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:35.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:35.956][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:35.958][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:35.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:35.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:35.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:35.963][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:35.964][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:35.966][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:35.967][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:35.968][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:35.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:35.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:35.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:35.974][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:35.975][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:35.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:35.977][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:35.979][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:35.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:35.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:35.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:35.984][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:35.985][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:35.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:35.988][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:35.989][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:35.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:35.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:35.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:35.994][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:35.996][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:35.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:35.998][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:36.000][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:36.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:36.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:36.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:36.005][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:36.006][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:36.007][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:36.008][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:36.010][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:36.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:36.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:36.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:36.015][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:36.016][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:36.018][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:36.019][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:36.020][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:36.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:36.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:36.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:36.026][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:36.027][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:36.028][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:36.029][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:36.031][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:36.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:36.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:36.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:36.036][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:36.038][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:36.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:36.040][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:36.042][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:36.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:36.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:36.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:36.047][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:36.048][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:36.049][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:36.051][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:36.052][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:36.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:36.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:36.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:36.057][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:36.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:36.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:36.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:36.062][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:36.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:36.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:36.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:36.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:36.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:36.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:36.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:36.072][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:36.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:36.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:36.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:36.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:36.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:36.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:36.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:36.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:36.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:36.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:36.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:36.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:36.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:36.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:36.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:36.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:36.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:36.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:36.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:36.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:36.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:36.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:36.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:36.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:36.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:36.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:36.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:36.108][self$createEntryFromContent] Accession numbers: 75311.
biodb.TRACE[2024-12-07 16:04:36.109][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:36.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:36.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:36.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:36.114][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:36.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:36.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:36.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:36.119][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:36.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:36.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:36.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:36.124][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:36.125][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:36.127][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:36.133][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:36.134][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:36.135][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:36.136][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:36.138][private$loadEntries] Creating entries from ids [1]: "75350".
biodb.DEBUG[2024-12-07 16:04:36.139][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:04:36.141][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75350".
biodb.TRACE[2024-12-07 16:04:36.143][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:04:36.144][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:04:36.145][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:04:36.147][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:04:36.148][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:04:36.149][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:04:36.152][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:36.153][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:36.155][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:36.161][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:36.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:36.163][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:36.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:36.166][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75350".
biodb.DEBUG[2024-12-07 16:04:36.169][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:04:36.171][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:04:36.172][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75350".
biodb.TRACE[2024-12-07 16:04:36.617][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75350).
biodb.DEBUG[2024-12-07 16:04:37.031][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:04:37.034][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37625fe42e340de84bdcc226ef73c285.content"
biodb.TRACE[2024-12-07 16:04:37.039][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37625fe42e340de84bdcc226ef73c285.request"
biodb.TRACE[2024-12-07 16:04:37.042][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75350.xml"
biodb.DEBUG[2024-12-07 16:04:37.061][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:04:37.063][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:04:37.064][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:04:37.066][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:37.068][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:37.069][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:37.075][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:37.076][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:37.078][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:37.079][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:37.081][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:37.083][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:37.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:37.085][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:37.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:37.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:37.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:37.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:37.092][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:37.093][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:37.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:37.096][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:37.097][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:37.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:37.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:37.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:37.102][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:37.104][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:37.105][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:37.106][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:37.107][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:37.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:37.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:37.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:37.113][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:37.114][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:37.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:37.116][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:37.118][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:37.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:37.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:37.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:37.123][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:37.124][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:37.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:37.127][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:37.128][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:37.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:37.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:37.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:37.133][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:37.135][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:37.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:37.137][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:37.138][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:37.140][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:37.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:37.142][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:37.144][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:37.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:37.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:37.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:37.149][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:37.150][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:37.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:37.152][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:37.154][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:37.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:37.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:37.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:37.159][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:37.161][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:37.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:37.163][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:37.165][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:37.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:37.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:37.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:37.170][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:37.171][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:37.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:37.174][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:37.175][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:37.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:37.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:37.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:37.181][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:37.182][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:37.183][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:37.184][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:37.186][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:37.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:37.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:37.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:37.191][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:37.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:37.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:37.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:37.196][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:37.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:37.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:37.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:37.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:37.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:37.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:37.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:37.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:37.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:37.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:37.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:37.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:37.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:37.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:37.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:37.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:37.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:37.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:37.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:37.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:37.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:37.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:37.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:37.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:37.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:37.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:37.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:37.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:37.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:37.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:37.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:37.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:37.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:37.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:37.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:37.241][self$createEntryFromContent] Accession numbers: 75350.
biodb.TRACE[2024-12-07 16:04:37.243][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:37.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:37.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:37.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:37.248][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:37.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:37.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:37.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:37.253][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:37.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:37.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:37.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:37.258][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:37.259][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:37.260][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:37.266][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:37.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:37.269][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:37.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:37.271][private$loadEntries] Creating entries from ids [1]: "87236".
biodb.DEBUG[2024-12-07 16:04:37.272][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:04:37.274][cch$loadFileContent] Trying to load 1 files from cache: [1]: "87236".
biodb.TRACE[2024-12-07 16:04:37.276][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:04:37.277][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:04:37.279][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:04:37.280][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:04:37.281][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:04:37.282][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:04:37.285][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:37.287][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:37.288][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:37.295][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:37.296][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:37.297][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:37.298][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:37.300][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=87236".
biodb.DEBUG[2024-12-07 16:04:37.303][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:04:37.305][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:04:37.306][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=87236".
biodb.TRACE[2024-12-07 16:04:37.746][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=87236).
biodb.DEBUG[2024-12-07 16:04:38.167][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:04:38.170][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/668dc6e1fe28fb2b9645ffb56917cb44.content"
biodb.TRACE[2024-12-07 16:04:38.174][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/668dc6e1fe28fb2b9645ffb56917cb44.request"
biodb.TRACE[2024-12-07 16:04:38.177][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/87236.xml"
biodb.DEBUG[2024-12-07 16:04:38.179][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:04:38.181][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:04:38.182][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:04:38.184][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:38.185][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:38.186][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:38.193][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:38.194][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:38.195][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:38.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:38.199][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:38.200][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:38.202][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:38.203][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:38.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:38.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:38.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:38.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:38.210][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:38.211][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:38.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:38.213][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:38.215][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:38.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:38.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:38.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:38.220][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:38.221][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:38.223][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:38.224][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:38.225][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:38.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:38.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:38.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:38.231][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:38.232][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:38.233][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:38.234][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:38.236][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:38.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:38.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:38.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:38.241][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:38.242][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:38.243][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:38.245][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:38.246][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:38.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:38.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:38.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:38.251][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:38.253][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:38.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:38.255][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:38.257][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:38.258][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:38.259][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:38.260][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:38.262][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:38.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:38.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:38.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:38.267][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:38.269][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:38.270][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:38.271][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:38.272][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:38.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:38.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:38.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:38.278][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:38.279][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:38.280][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:38.281][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:38.283][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:38.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:38.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:38.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:38.288][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:38.290][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:38.291][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:38.292][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:38.294][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:38.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:38.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:38.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:38.299][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:38.300][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:38.301][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:38.302][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:38.304][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:38.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:38.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:38.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:38.309][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:38.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:38.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:38.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:38.314][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:38.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:38.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:38.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:38.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:38.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:38.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:38.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:38.324][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:38.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:38.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:38.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:38.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:38.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:38.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:38.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:38.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:38.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:38.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:38.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:38.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:38.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:38.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:38.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:38.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:38.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:38.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:38.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:38.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:38.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:38.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:38.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:38.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:38.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:38.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:38.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:38.369][self$createEntryFromContent] Accession numbers: 87236.
biodb.TRACE[2024-12-07 16:04:38.371][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:38.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:38.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:38.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:38.376][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:38.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:38.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:38.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:38.381][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:38.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:38.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:38.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:38.386][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:38.387][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:38.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:38.394][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:38.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:38.397][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:38.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:38.399][private$loadEntries] Creating entries from ids [1]: "132193".
biodb.DEBUG[2024-12-07 16:04:38.400][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:04:38.402][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132193".
biodb.TRACE[2024-12-07 16:04:38.404][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:04:38.405][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:04:38.407][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:04:38.408][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:04:38.409][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:04:38.411][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:04:38.414][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:38.415][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:38.416][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:38.422][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:38.423][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:38.425][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:38.426][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:38.427][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132193".
biodb.DEBUG[2024-12-07 16:04:38.431][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:04:38.432][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:04:38.434][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132193".
biodb.TRACE[2024-12-07 16:04:38.880][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132193).
biodb.DEBUG[2024-12-07 16:04:39.296][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:04:39.299][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/485d54e768e8b3a26016a2841d39a83c.content"
biodb.TRACE[2024-12-07 16:04:39.303][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/485d54e768e8b3a26016a2841d39a83c.request"
biodb.TRACE[2024-12-07 16:04:39.306][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132193.xml"
biodb.DEBUG[2024-12-07 16:04:39.308][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:04:39.310][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:04:39.311][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:04:39.313][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:39.314][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:39.315][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:39.322][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:39.323][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:39.324][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:39.325][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:39.328][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:39.329][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:39.330][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:39.331][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:39.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:39.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:39.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:39.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:39.338][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:39.339][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:39.340][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:39.342][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:39.343][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:39.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:39.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:39.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:39.348][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:39.350][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:39.351][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:39.352][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:39.354][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:39.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:39.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:39.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:39.359][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:39.360][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:39.361][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:39.363][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:39.364][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:39.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:39.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:39.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:39.369][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:39.371][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:39.372][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:39.373][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:39.375][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:39.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:39.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:39.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:39.380][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:39.381][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:39.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:39.383][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:39.385][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:39.386][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:39.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:39.389][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:39.390][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:39.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:39.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:39.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:39.395][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:39.397][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:39.398][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:39.399][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:39.400][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:39.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:39.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:39.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:39.406][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:39.407][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:39.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:39.409][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:39.411][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:39.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:39.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:39.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:39.416][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:39.418][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:39.419][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:39.420][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:39.421][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:39.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:39.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:39.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:39.427][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:39.428][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:39.429][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:39.430][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:39.432][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:39.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:39.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:39.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:39.437][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:39.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:39.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:39.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:39.442][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:39.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:39.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:39.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:39.447][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:39.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:39.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:39.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:39.452][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:39.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:39.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:39.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:39.457][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:39.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:39.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:39.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:39.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:39.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:39.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:39.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:39.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:39.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:39.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:39.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:39.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:39.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:39.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:39.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:39.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:39.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:39.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:39.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:39.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:39.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:39.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:39.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:39.487][self$createEntryFromContent] Accession numbers: 132193.
biodb.TRACE[2024-12-07 16:04:39.488][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:39.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:39.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:39.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:39.493][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:39.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:39.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:39.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:39.498][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:39.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:39.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:39.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:39.503][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:39.504][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:39.506][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:39.512][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:39.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:39.514][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:39.515][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:39.516][private$loadEntries] Creating entries from ids [1]: "146002".
biodb.DEBUG[2024-12-07 16:04:39.518][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:04:39.520][cch$loadFileContent] Trying to load 1 files from cache: [1]: "146002".
biodb.TRACE[2024-12-07 16:04:39.521][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:04:39.523][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:04:39.524][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:04:39.525][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:04:39.526][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:04:39.528][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:04:39.531][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:39.532][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:39.533][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:39.539][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:39.541][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:39.542][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:39.543][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:39.544][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=146002".
biodb.DEBUG[2024-12-07 16:04:39.548][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:04:39.549][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:04:39.551][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=146002".
biodb.TRACE[2024-12-07 16:04:39.995][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=146002).
biodb.DEBUG[2024-12-07 16:04:40.412][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:04:40.414][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f6f6aad2df3f38cd332b2e82fd62eca2.content"
biodb.TRACE[2024-12-07 16:04:40.419][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f6f6aad2df3f38cd332b2e82fd62eca2.request"
biodb.TRACE[2024-12-07 16:04:40.422][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/146002.xml"
biodb.DEBUG[2024-12-07 16:04:40.424][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:04:40.425][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:04:40.427][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:04:40.429][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:40.430][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:40.431][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:40.437][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:40.438][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:40.439][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:40.440][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:40.443][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:40.445][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:40.446][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:40.447][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:40.449][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:40.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:40.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:40.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:40.454][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:40.455][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:40.456][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:40.457][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:40.459][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:40.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:40.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:40.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:40.464][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:40.465][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:40.467][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:40.468][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:40.469][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:40.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:40.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:40.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:40.474][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:40.476][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:40.477][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:40.478][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:40.480][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:40.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:40.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:40.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:40.485][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:40.497][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:40.498][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:40.500][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:40.501][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:40.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:40.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:40.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:40.507][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:40.508][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:40.509][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:40.510][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:40.512][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:40.513][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:40.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:40.516][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:40.517][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:40.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:40.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:40.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:40.522][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:40.524][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:40.525][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:40.526][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:40.528][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:40.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:40.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:40.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:40.533][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:40.534][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:40.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:40.537][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:40.538][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:40.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:40.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:40.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:40.543][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:40.545][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:40.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:40.547][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:40.549][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:40.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:40.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:40.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:40.554][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:40.555][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:40.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:40.557][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:40.559][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:40.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:40.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:40.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:40.564][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:40.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:40.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:40.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:40.569][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:40.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:40.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:40.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:40.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:40.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:40.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:40.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:40.579][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:40.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:40.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:40.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:40.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:40.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:40.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:40.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:40.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:40.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:40.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:40.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:40.594][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:40.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:40.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:40.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:40.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:40.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:40.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:40.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:40.604][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:40.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:40.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:40.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:40.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:40.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:40.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:40.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:40.614][self$createEntryFromContent] Accession numbers: 146002.
biodb.TRACE[2024-12-07 16:04:40.615][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:40.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:40.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:40.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:40.620][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:40.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:40.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:40.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:40.626][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:40.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:40.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:40.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:40.631][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:40.632][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:40.633][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:40.639][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:40.640][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:40.642][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:40.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:40.644][private$loadEntries] Creating entries from ids [1]: "65641".
biodb.DEBUG[2024-12-07 16:04:40.645][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:04:40.647][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65641".
biodb.TRACE[2024-12-07 16:04:40.649][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:04:40.650][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:04:40.652][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:04:40.653][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:04:40.654][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:04:40.655][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:04:40.659][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:40.660][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:40.661][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:40.667][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:40.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:40.670][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:40.671][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:40.673][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65641".
biodb.DEBUG[2024-12-07 16:04:40.676][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:04:40.677][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:04:40.679][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65641".
biodb.TRACE[2024-12-07 16:04:41.116][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65641).
biodb.DEBUG[2024-12-07 16:04:41.533][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:04:41.536][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cb3af00d6d6a96efc61a93d5105272fc.content"
biodb.TRACE[2024-12-07 16:04:41.540][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cb3af00d6d6a96efc61a93d5105272fc.request"
biodb.TRACE[2024-12-07 16:04:41.544][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65641.xml"
biodb.DEBUG[2024-12-07 16:04:41.545][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:04:41.547][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:04:41.548][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:04:41.550][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:41.552][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:41.553][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:41.559][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:41.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:41.561][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:41.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:41.565][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:41.566][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:41.567][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:41.569][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:41.570][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:41.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:41.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:41.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:41.575][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:41.576][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:41.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:41.579][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:41.580][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:41.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:41.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:41.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:41.586][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:41.587][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:41.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:41.589][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:41.591][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:41.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:41.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:41.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:41.596][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:41.597][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:41.598][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:41.600][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:41.601][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:41.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:41.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:41.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:41.606][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:41.608][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:41.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:41.610][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:41.612][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:41.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:41.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:41.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:41.617][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:41.618][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:41.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:41.620][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:41.622][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:41.623][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:41.624][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:41.626][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:41.627][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:41.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:41.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:41.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:41.632][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:41.634][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:41.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:41.636][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:41.637][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:41.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:41.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:41.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:41.642][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:41.644][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:41.645][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:41.646][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:41.648][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:41.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:41.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:41.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:41.653][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:41.654][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:41.655][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:41.657][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:41.658][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:41.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:41.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:41.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:41.663][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:41.665][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:41.666][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:41.667][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:41.669][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:41.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:41.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:41.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:41.674][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:41.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:41.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:41.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:41.679][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:41.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:41.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:41.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:41.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:41.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:41.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:41.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:41.689][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:41.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:41.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:41.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:41.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:41.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:41.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:41.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:41.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:41.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:41.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:41.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:41.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:41.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:41.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:41.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:41.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:41.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:41.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:41.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:41.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:41.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:41.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:41.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:41.719][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:41.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:41.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:41.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:41.724][self$createEntryFromContent] Accession numbers: 65641.
biodb.TRACE[2024-12-07 16:04:41.725][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:41.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:41.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:41.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:41.730][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:41.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:41.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:41.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:41.736][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:41.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:41.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:41.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:41.741][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:41.742][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:41.743][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:41.749][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:41.750][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:41.751][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:41.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:41.754][private$loadEntries] Creating entries from ids [1]: "144071".
biodb.DEBUG[2024-12-07 16:04:41.755][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:04:41.757][cch$loadFileContent] Trying to load 1 files from cache: [1]: "144071".
biodb.TRACE[2024-12-07 16:04:41.759][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:04:41.760][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:04:41.762][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:04:41.763][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:04:41.764][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:04:41.765][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:04:41.778][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:41.779][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:41.780][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:41.786][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:41.788][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:41.789][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:41.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:41.791][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=144071".
biodb.DEBUG[2024-12-07 16:04:41.795][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:04:41.796][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:04:41.798][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=144071".
biodb.TRACE[2024-12-07 16:04:42.229][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=144071).
biodb.DEBUG[2024-12-07 16:04:42.644][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:04:42.646][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/147c6b10a8e09e725fbbb250103f039d.content"
biodb.TRACE[2024-12-07 16:04:42.651][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/147c6b10a8e09e725fbbb250103f039d.request"
biodb.TRACE[2024-12-07 16:04:42.655][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/144071.xml"
biodb.DEBUG[2024-12-07 16:04:42.657][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:04:42.659][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:04:42.660][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:04:42.662][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:42.663][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:42.664][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:42.670][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:42.672][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:42.673][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:42.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:42.677][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:42.678][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:42.679][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:42.680][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:42.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:42.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:42.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:42.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:42.687][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:42.688][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:42.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:42.691][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:42.692][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:42.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:42.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:42.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:42.697][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:42.699][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:42.700][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:42.701][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:42.703][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:42.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:42.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:42.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:42.708][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:42.709][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:42.710][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:42.712][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:42.713][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:42.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:42.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:42.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:42.718][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:42.720][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:42.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:42.722][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:42.723][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:42.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:42.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:42.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:42.729][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:42.730][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:42.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:42.732][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:42.734][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:42.735][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:42.736][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:42.738][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:42.739][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:42.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:42.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:42.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:42.744][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:42.746][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:42.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:42.748][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:42.750][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:42.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:42.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:42.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:42.755][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:42.756][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:42.757][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:42.758][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:42.760][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:42.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:42.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:42.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:42.765][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:42.767][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:42.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:42.769][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:42.771][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:42.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:42.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:42.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:42.776][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:42.777][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:42.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:42.780][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:42.781][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:42.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:42.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:42.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:42.787][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:42.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:42.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:42.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:42.792][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:42.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:42.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:42.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:42.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:42.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:42.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:42.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:42.802][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:42.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:42.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:42.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:42.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:42.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:42.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:42.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:42.812][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:42.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:42.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:42.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:42.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:42.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:42.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:42.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:42.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:42.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:42.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:42.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:42.828][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:42.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:42.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:42.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:42.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:42.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:42.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:42.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:42.838][self$createEntryFromContent] Accession numbers: 144071.
biodb.TRACE[2024-12-07 16:04:42.839][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:42.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:42.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:42.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:42.844][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:42.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:42.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:42.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:42.849][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:42.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:42.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:42.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:42.854][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:42.855][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:42.856][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:42.863][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:42.864][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:42.865][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:42.866][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:42.867][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:42.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:42.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:42.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:42.873][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:42.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:42.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:42.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:42.878][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:42.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:42.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:42.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:42.883][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:42.884][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:42.885][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:42.891][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:42.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:42.893][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:42.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:42.896][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:42.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:42.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:42.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:42.901][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:42.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:42.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:42.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:42.906][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:42.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:42.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:42.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:42.911][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:42.912][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:42.913][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:42.919][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:42.920][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:42.922][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:42.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:42.924][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:42.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:42.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:42.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:42.929][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:42.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:42.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:42.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:42.934][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:42.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:42.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:42.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:42.939][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:42.940][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:42.941][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:42.948][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:42.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:42.950][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:42.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:42.953][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:42.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:42.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:42.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:42.958][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:42.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:42.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:42.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:42.963][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:42.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:42.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:42.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:42.968][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:42.969][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:42.970][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:42.976][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:42.977][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:42.978][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:42.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:42.981][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:42.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:42.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:42.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:42.986][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:42.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:42.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:42.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:42.991][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:42.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:42.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:42.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:42.996][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:42.997][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:42.998][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:43.004][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:43.005][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:43.006][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:43.007][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:43.009][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:43.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:43.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:43.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:43.014][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:43.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:43.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:43.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:43.019][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:43.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:43.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:43.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:43.024][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:43.025][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:43.026][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:43.032][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:43.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:43.034][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:43.035][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:43.037][private$loadEntries] Creating entries from ids [1]: "168650".
biodb.DEBUG[2024-12-07 16:04:43.038][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:04:43.048][cch$loadFileContent] Trying to load 1 files from cache: [1]: "168650".
biodb.TRACE[2024-12-07 16:04:43.050][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:04:43.051][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:04:43.053][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:04:43.054][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:04:43.055][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:04:43.057][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:04:43.060][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:43.061][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:43.062][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:43.068][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:43.069][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:43.070][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:43.071][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:43.073][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=168650".
biodb.DEBUG[2024-12-07 16:04:43.076][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:04:43.077][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:04:43.079][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=168650".
biodb.TRACE[2024-12-07 16:04:43.520][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=168650).
biodb.DEBUG[2024-12-07 16:04:43.936][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:04:43.939][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fbd7acd341e86313aeb547b3d6d3201b.content"
biodb.TRACE[2024-12-07 16:04:43.943][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fbd7acd341e86313aeb547b3d6d3201b.request"
biodb.TRACE[2024-12-07 16:04:43.947][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/168650.xml"
biodb.DEBUG[2024-12-07 16:04:43.949][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:04:43.950][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:04:43.952][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:04:43.954][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:43.955][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:43.956][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:43.962][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:43.964][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:43.965][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:43.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:43.968][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:43.970][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:43.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:43.972][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:43.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:43.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:43.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:43.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:43.979][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:43.980][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:43.981][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:43.982][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:43.984][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:43.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:43.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:43.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:43.989][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:43.990][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:43.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:43.993][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:43.995][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:43.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:43.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:43.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:44.000][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:44.001][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:44.002][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:44.003][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:44.005][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:44.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:44.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:44.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:44.010][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:44.011][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:44.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:44.014][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:44.015][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:44.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:44.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:44.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:44.021][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:44.022][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:44.023][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:44.025][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:44.026][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:44.028][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:44.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:44.030][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:44.032][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:44.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:44.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:44.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:44.037][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:44.038][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:44.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:44.041][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:44.042][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:44.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:44.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:44.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:44.048][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:44.049][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:44.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:44.052][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:44.054][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:44.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:44.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:44.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:44.059][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:44.060][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:44.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:44.063][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:44.064][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:44.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:44.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:44.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:44.070][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:44.071][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:44.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:44.074][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:44.075][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:44.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:44.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:44.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:44.080][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:44.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:44.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:44.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:44.085][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:44.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:44.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:44.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:44.090][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:44.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:44.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:44.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:44.095][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:44.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:44.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:44.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:44.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:44.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:44.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:44.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:44.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:44.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:44.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:44.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:44.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:44.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:44.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:44.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:44.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:44.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:44.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:44.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:44.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:44.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:44.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:44.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:44.125][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:44.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:44.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:44.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:44.130][self$createEntryFromContent] Accession numbers: 168650.
biodb.TRACE[2024-12-07 16:04:44.131][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:44.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:44.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:44.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:44.136][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:44.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:44.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:44.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:44.141][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:44.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:44.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:44.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:44.146][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:44.147][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:44.148][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:44.155][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:44.156][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:44.157][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:44.158][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:44.159][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:44.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:44.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:44.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:44.164][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:44.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:44.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:44.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:44.169][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:44.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:44.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:44.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:44.174][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:44.175][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:44.176][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:44.182][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:44.184][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:44.185][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:44.186][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:44.187][private$loadEntries] Creating entries from ids [1]: "169305".
biodb.DEBUG[2024-12-07 16:04:44.188][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:04:44.190][cch$loadFileContent] Trying to load 1 files from cache: [1]: "169305".
biodb.TRACE[2024-12-07 16:04:44.192][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:04:44.193][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:04:44.195][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:04:44.196][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:04:44.197][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:04:44.198][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:04:44.201][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:44.203][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:44.204][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:44.210][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:44.211][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:44.212][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:44.213][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:44.215][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169305".
biodb.DEBUG[2024-12-07 16:04:44.218][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:04:44.219][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:04:44.221][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169305".
biodb.TRACE[2024-12-07 16:04:44.683][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169305).
biodb.DEBUG[2024-12-07 16:04:45.113][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:04:45.116][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5eab934e4cfb5514f373385a6170c282.content"
biodb.TRACE[2024-12-07 16:04:45.120][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5eab934e4cfb5514f373385a6170c282.request"
biodb.TRACE[2024-12-07 16:04:45.124][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169305.xml"
biodb.DEBUG[2024-12-07 16:04:45.126][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:04:45.127][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:04:45.129][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:04:45.131][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:45.132][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:45.133][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:45.139][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:45.141][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:45.142][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:45.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:45.146][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:45.147][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:45.148][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:45.149][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:45.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:45.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:45.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:45.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:45.156][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:45.157][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:45.159][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:45.160][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:45.162][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:45.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:45.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:45.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:45.167][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:45.168][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:45.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:45.171][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:45.173][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:45.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:45.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:45.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:45.178][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:45.179][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:45.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:45.181][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:45.183][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:45.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:45.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:45.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:45.188][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:45.189][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:45.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:45.192][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:45.193][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:45.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:45.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:45.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:45.198][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:45.200][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:45.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:45.202][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:45.204][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:45.205][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:45.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:45.207][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:45.209][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:45.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:45.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:45.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:45.226][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:45.227][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:45.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:45.230][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:45.231][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:45.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:45.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:45.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:45.236][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:45.238][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:45.239][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:45.240][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:45.242][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:45.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:45.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:45.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:45.247][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:45.248][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:45.250][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:45.251][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:45.252][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:45.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:45.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:45.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:45.257][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:45.259][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:45.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:45.261][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:45.262][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:45.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:45.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:45.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:45.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:45.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:45.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:45.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:45.273][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:45.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:45.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:45.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:45.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:45.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:45.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:45.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:45.283][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:45.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:45.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:45.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:45.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:45.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:45.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:45.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:45.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:45.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:45.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:45.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:45.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:45.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:45.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:45.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:45.303][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:45.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:45.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:45.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:45.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:45.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:45.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:45.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:45.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:45.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:45.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:45.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:45.318][self$createEntryFromContent] Accession numbers: 169305.
biodb.TRACE[2024-12-07 16:04:45.319][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:45.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:45.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:45.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:45.324][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:45.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:45.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:45.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:45.329][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:45.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:45.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:45.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:45.334][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:45.335][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:45.336][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:45.342][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:45.343][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:45.345][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:45.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:45.347][private$loadEntries] Creating entries from ids [1]: "176869".
biodb.DEBUG[2024-12-07 16:04:45.348][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:04:45.350][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176869".
biodb.TRACE[2024-12-07 16:04:45.352][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:04:45.353][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:04:45.355][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:04:45.356][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:04:45.357][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:04:45.358][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:04:45.362][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:45.363][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:45.364][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:45.370][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:45.371][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:45.372][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:45.374][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:45.375][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176869".
biodb.DEBUG[2024-12-07 16:04:45.379][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:04:45.380][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:04:45.382][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176869".
biodb.TRACE[2024-12-07 16:04:45.818][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176869).
biodb.DEBUG[2024-12-07 16:04:46.233][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:04:46.236][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2c477fa42863c662724815d047e8c32.content"
biodb.TRACE[2024-12-07 16:04:46.240][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2c477fa42863c662724815d047e8c32.request"
biodb.TRACE[2024-12-07 16:04:46.244][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176869.xml"
biodb.DEBUG[2024-12-07 16:04:46.246][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:04:46.247][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:04:46.248][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:04:46.250][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:46.252][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:46.253][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:46.259][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:46.260][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:46.261][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:46.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:46.265][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:46.267][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:46.268][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:46.269][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:46.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:46.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:46.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:46.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:46.276][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:46.277][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:46.278][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:46.279][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:46.281][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:46.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:46.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:46.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:46.286][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:46.287][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:46.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:46.290][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:46.292][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:46.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:46.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:46.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:46.297][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:46.298][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:46.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:46.300][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:46.302][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:46.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:46.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:46.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:46.307][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:46.308][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:46.310][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:46.311][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:46.312][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:46.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:46.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:46.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:46.317][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:46.319][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:46.320][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:46.321][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:46.323][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:46.324][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:46.325][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:46.326][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:46.328][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:46.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:46.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:46.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:46.333][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:46.334][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:46.336][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:46.337][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:46.338][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:46.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:46.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:46.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:46.343][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:46.345][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:46.346][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:46.347][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:46.349][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:46.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:46.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:46.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:46.354][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:46.355][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:46.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:46.358][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:46.359][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:46.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:46.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:46.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:46.364][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:46.366][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:46.367][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:46.368][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:46.370][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:46.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:46.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:46.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:46.375][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:46.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:46.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:46.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:46.380][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:46.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:46.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:46.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:46.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:46.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:46.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:46.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:46.390][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:46.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:46.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:46.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:46.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:46.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:46.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:46.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:46.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:46.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:46.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:46.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:46.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:46.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:46.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:46.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:46.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:46.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:46.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:46.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:46.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:46.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:46.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:46.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:46.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:46.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:46.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:46.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:46.425][self$createEntryFromContent] Accession numbers: 176869.
biodb.TRACE[2024-12-07 16:04:46.427][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:46.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:46.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:46.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:46.432][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:46.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:46.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:46.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:46.436][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:46.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:46.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:46.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:46.441][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:46.442][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:46.443][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:46.450][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:46.451][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:46.452][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:46.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:46.454][private$loadEntries] Creating entries from ids [1]: "185696".
biodb.DEBUG[2024-12-07 16:04:46.456][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:04:46.458][cch$loadFileContent] Trying to load 1 files from cache: [1]: "185696".
biodb.TRACE[2024-12-07 16:04:46.459][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:04:46.461][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:04:46.462][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:04:46.463][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:04:46.465][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:04:46.466][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:04:46.469][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:46.470][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:46.471][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:46.478][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:46.479][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:46.480][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:46.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:46.483][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=185696".
biodb.DEBUG[2024-12-07 16:04:46.486][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:04:46.487][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:04:46.497][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=185696".
biodb.TRACE[2024-12-07 16:04:46.938][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=185696).
biodb.DEBUG[2024-12-07 16:04:47.355][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:04:47.358][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/030ac759c83231dbd7b7d6c83788888c.content"
biodb.TRACE[2024-12-07 16:04:47.363][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/030ac759c83231dbd7b7d6c83788888c.request"
biodb.TRACE[2024-12-07 16:04:47.366][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/185696.xml"
biodb.DEBUG[2024-12-07 16:04:47.368][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:04:47.369][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:04:47.371][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:04:47.373][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:47.374][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:47.375][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:47.382][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:47.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:47.384][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:47.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:47.388][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:47.389][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:47.391][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:47.392][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:47.393][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:47.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:47.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:47.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:47.399][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:47.400][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:47.401][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:47.402][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:47.404][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:47.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:47.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:47.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:47.409][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:47.411][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:47.412][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:47.413][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:47.415][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:47.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:47.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:47.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:47.420][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:47.421][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:47.422][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:47.423][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:47.425][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:47.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:47.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:47.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:47.430][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:47.431][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:47.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:47.434][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:47.435][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:47.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:47.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:47.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:47.440][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:47.441][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:47.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:47.444][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:47.445][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:47.447][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:47.448][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:47.449][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:47.450][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:47.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:47.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:47.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:47.456][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:47.457][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:47.458][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:47.459][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:47.461][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:47.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:47.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:47.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:47.466][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:47.467][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:47.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:47.470][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:47.471][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:47.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:47.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:47.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:47.476][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:47.478][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:47.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:47.480][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:47.482][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:47.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:47.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:47.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:47.487][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:47.488][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:47.489][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:47.490][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:47.492][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:47.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:47.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:47.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:47.497][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:47.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:47.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:47.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:47.502][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:47.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:47.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:47.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:47.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:47.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:47.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:47.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:47.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:47.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:47.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:47.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:47.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:47.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:47.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:47.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:47.522][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:47.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:47.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:47.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:47.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:47.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:47.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:47.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:47.532][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:47.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:47.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:47.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:47.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:47.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:47.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:47.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:47.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:47.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:47.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:47.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:47.547][self$createEntryFromContent] Accession numbers: 185696.
biodb.TRACE[2024-12-07 16:04:47.549][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:47.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:47.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:47.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:47.554][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:47.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:47.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:47.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:47.559][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:47.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:47.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:47.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:47.564][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:47.565][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:47.566][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:47.572][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:47.573][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:47.574][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:47.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:47.577][private$loadEntries] Creating entries from ids [1]: "190762".
biodb.DEBUG[2024-12-07 16:04:47.578][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:04:47.580][cch$loadFileContent] Trying to load 1 files from cache: [1]: "190762".
biodb.TRACE[2024-12-07 16:04:47.581][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:04:47.583][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:04:47.584][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:04:47.585][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:04:47.587][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:04:47.588][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:04:47.591][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:47.592][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:47.593][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:47.600][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:47.601][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:47.602][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:47.603][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:47.605][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=190762".
biodb.DEBUG[2024-12-07 16:04:47.608][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:04:47.609][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:04:47.611][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=190762".
biodb.TRACE[2024-12-07 16:04:48.047][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=190762).
biodb.DEBUG[2024-12-07 16:04:48.465][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:04:48.467][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fa9da4de7d7dc0d4458ab1ff7bbbbda0.content"
biodb.TRACE[2024-12-07 16:04:48.472][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fa9da4de7d7dc0d4458ab1ff7bbbbda0.request"
biodb.TRACE[2024-12-07 16:04:48.475][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/190762.xml"
biodb.DEBUG[2024-12-07 16:04:48.477][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:04:48.478][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:04:48.480][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:04:48.482][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:48.483][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:48.484][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:48.490][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:48.491][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:48.493][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:48.494][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:48.496][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:48.498][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:48.499][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:48.500][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:48.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:48.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:48.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:48.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:48.507][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:48.508][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:48.509][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:48.510][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:48.512][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:48.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:48.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:48.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:48.517][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:48.518][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:48.519][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:48.521][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:48.522][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:48.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:48.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:48.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:48.528][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:48.529][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:48.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:48.531][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:48.533][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:48.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:48.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:48.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:48.538][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:48.539][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:48.540][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:48.542][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:48.543][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:48.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:48.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:48.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:48.548][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:48.550][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:48.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:48.552][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:48.554][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:48.555][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:48.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:48.557][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:48.559][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:48.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:48.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:48.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:48.564][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:48.565][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:48.567][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:48.568][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:48.569][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:48.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:48.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:48.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:48.574][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:48.576][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:48.577][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:48.578][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:48.580][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:48.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:48.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:48.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:48.585][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:48.587][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:48.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:48.589][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:48.591][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:48.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:48.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:48.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:48.596][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:48.597][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:48.598][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:48.599][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:48.601][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:48.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:48.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:48.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:48.606][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:48.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:48.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:48.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:48.611][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:48.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:48.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:48.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:48.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:48.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:48.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:48.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:48.633][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:48.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:48.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:48.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:48.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:48.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:48.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:48.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:48.643][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:48.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:48.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:48.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:48.648][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:48.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:48.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:48.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:48.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:48.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:48.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:48.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:48.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:48.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:48.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:48.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:48.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:48.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:48.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:48.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:48.668][self$createEntryFromContent] Accession numbers: 190762.
biodb.TRACE[2024-12-07 16:04:48.670][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:48.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:48.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:48.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:48.675][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:48.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:48.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:48.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:48.680][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:48.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:48.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:48.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:48.685][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:48.686][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:48.687][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:48.693][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:48.694][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:48.695][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:48.696][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:48.698][private$loadEntries] Creating entries from ids [1]: "193176".
biodb.DEBUG[2024-12-07 16:04:48.699][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:04:48.701][cch$loadFileContent] Trying to load 1 files from cache: [1]: "193176".
biodb.TRACE[2024-12-07 16:04:48.702][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:04:48.704][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:04:48.705][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:04:48.706][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:04:48.708][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:04:48.709][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:04:48.712][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:48.713][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:48.714][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:48.720][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:48.722][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:48.723][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:48.724][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:48.725][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=193176".
biodb.DEBUG[2024-12-07 16:04:48.729][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:04:48.730][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:04:48.732][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=193176".
biodb.TRACE[2024-12-07 16:04:49.183][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=193176).
biodb.DEBUG[2024-12-07 16:04:49.600][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:04:49.602][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/343c078fd7b00f04bd71e6f2aebb6ed3.content"
biodb.TRACE[2024-12-07 16:04:49.607][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/343c078fd7b00f04bd71e6f2aebb6ed3.request"
biodb.TRACE[2024-12-07 16:04:49.610][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/193176.xml"
biodb.DEBUG[2024-12-07 16:04:49.612][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:04:49.613][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:04:49.615][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:04:49.617][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:49.618][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:49.619][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:49.625][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:49.626][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:49.627][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:49.628][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:49.631][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:49.632][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:49.634][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:49.635][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:49.636][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:49.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:49.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:49.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:49.642][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:49.643][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:49.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:49.645][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:49.647][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:49.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:49.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:49.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:49.652][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:49.653][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:49.654][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:49.656][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:49.657][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:49.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:49.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:49.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:49.662][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:49.664][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:49.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:49.666][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:49.668][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:49.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:49.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:49.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:49.673][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:49.674][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:49.675][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:49.676][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:49.678][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:49.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:49.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:49.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:49.683][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:49.684][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:49.686][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:49.687][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:49.688][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:49.690][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:49.691][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:49.692][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:49.694][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:49.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:49.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:49.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:49.699][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:49.700][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:49.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:49.702][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:49.704][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:49.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:49.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:49.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:49.709][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:49.710][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:49.712][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:49.713][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:49.714][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:49.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:49.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:49.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:49.720][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:49.721][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:49.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:49.723][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:49.725][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:49.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:49.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:49.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:49.730][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:49.731][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:49.732][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:49.734][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:49.735][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:49.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:49.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:49.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:49.740][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:49.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:49.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:49.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:49.745][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:49.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:49.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:49.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:49.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:49.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:49.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:49.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:49.755][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:49.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:49.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:49.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:49.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:49.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:49.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:49.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:49.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:49.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:49.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:49.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:49.771][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:49.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:49.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:49.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:49.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:49.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:49.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:49.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:49.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:49.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:49.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:49.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:49.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:49.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:49.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:49.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:49.791][self$createEntryFromContent] Accession numbers: 193176.
biodb.TRACE[2024-12-07 16:04:49.792][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:49.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:49.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:49.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:49.797][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:49.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:49.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:49.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:49.802][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:49.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:49.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:49.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:49.808][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:49.809][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:49.810][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:49.816][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:49.817][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:49.818][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:49.820][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:49.821][private$loadEntries] Creating entries from ids [1]: "196395".
biodb.DEBUG[2024-12-07 16:04:49.822][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:04:49.824][cch$loadFileContent] Trying to load 1 files from cache: [1]: "196395".
biodb.TRACE[2024-12-07 16:04:49.826][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:04:49.827][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:04:49.829][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:04:49.830][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:04:49.831][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:04:49.833][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:04:49.836][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:49.837][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:49.838][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:49.845][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:49.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:49.847][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:49.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:49.850][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=196395".
biodb.DEBUG[2024-12-07 16:04:49.853][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:04:49.855][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:04:49.857][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=196395".
biodb.TRACE[2024-12-07 16:04:50.310][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=196395).
biodb.DEBUG[2024-12-07 16:04:50.730][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:04:50.732][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/73421bc681b7c5ac1a6297ef414ac513.content"
biodb.TRACE[2024-12-07 16:04:50.737][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/73421bc681b7c5ac1a6297ef414ac513.request"
biodb.TRACE[2024-12-07 16:04:50.740][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/196395.xml"
biodb.DEBUG[2024-12-07 16:04:50.742][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:04:50.744][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:04:50.745][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:04:50.747][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:50.749][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:50.750][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:50.756][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:50.757][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:50.758][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:50.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:50.762][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:50.763][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:50.765][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:50.766][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:50.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:50.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:50.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:50.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:50.772][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:50.773][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:50.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:50.776][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:50.777][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:50.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:50.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:50.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:50.782][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:50.784][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:50.797][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:50.798][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:50.800][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:50.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:50.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:50.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:50.806][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:50.807][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:50.808][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:50.809][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:50.811][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:50.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:50.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:50.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:50.816][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:50.817][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:50.818][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:50.819][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:50.821][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:50.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:50.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:50.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:50.826][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:50.827][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:50.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:50.830][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:50.831][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:50.832][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:50.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:50.835][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:50.836][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:50.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:50.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:50.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:50.841][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:50.843][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:50.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:50.845][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:50.846][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:50.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:50.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:50.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:50.851][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:50.853][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:50.854][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:50.856][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:50.857][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:50.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:50.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:50.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:50.862][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:50.864][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:50.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:50.866][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:50.867][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:50.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:50.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:50.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:50.873][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:50.874][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:50.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:50.876][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:50.878][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:50.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:50.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:50.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:50.883][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:50.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:50.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:50.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:50.888][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:50.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:50.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:50.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:50.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:50.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:50.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:50.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:50.898][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:50.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:50.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:50.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:50.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:50.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:50.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:50.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:50.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:50.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:50.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:50.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:50.918][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:50.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:50.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:50.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:50.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:50.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:50.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:50.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:50.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:50.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:50.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:50.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:50.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:50.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:50.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:50.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:50.938][self$createEntryFromContent] Accession numbers: 196395.
biodb.TRACE[2024-12-07 16:04:50.939][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:50.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:50.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:50.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:50.944][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:50.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:50.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:50.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:50.949][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:50.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:50.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:50.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:50.954][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:50.955][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:50.957][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:50.963][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:50.964][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:50.965][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:50.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:50.968][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:50.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:50.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:50.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:50.973][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:50.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:50.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:50.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:50.978][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:50.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:50.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:50.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:50.983][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:04:50.985][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:50.986][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:50.987][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:50.994][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:50.995][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:50.996][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:50.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:50.998][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.003][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.008][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:51.010][private$selectFields]
biodb.TRACE[2024-12-07 16:04:51.011][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:04:51.012][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:04:51.013][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:51.014][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.016][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.017][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.018][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.019][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.021][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.023][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.024][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:51.026][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:51.027][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.028][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.030][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.032][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:04:51.033][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.038][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.043][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.048][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-12-07 16:04:51.050][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:51.051][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:51.052][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:51.058][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:51.059][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:51.061][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:51.062][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:51.063][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.068][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.073][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:51.074][private$selectFields]
biodb.TRACE[2024-12-07 16:04:51.075][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:04:51.077][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:04:51.078][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:51.079][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.080][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.081][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.083][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.084][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.085][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.088][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.089][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:51.090][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:51.091][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.093][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.095][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.096][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:04:51.097][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.102][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.107][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.113][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2024-12-07 16:04:51.114][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:51.115][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:51.116][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:51.122][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:51.124][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:51.125][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:51.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:51.128][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.138][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:51.139][private$selectFields]
biodb.TRACE[2024-12-07 16:04:51.140][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:04:51.141][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:04:51.142][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:51.144][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.145][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.147][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.149][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.150][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.152][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.153][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:51.155][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:51.156][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.157][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.158][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.160][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.161][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:04:51.162][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.167][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.172][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.177][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2024-12-07 16:04:51.178][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:04:51.180][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:04:51.205][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:51.207][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:51.208][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:51.214][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:51.221][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:51.222][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:51.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:51.227][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:04:51.232][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:04:51.233][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ebf8c17fa19fb0caf99d83ca8441a2ac".
biodb.TRACE[2024-12-07 16:04:51.235][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:04:51.237][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ebf8c17fa19fb0caf99d83ca8441a2ac.content".
biodb.DEBUG[2024-12-07 16:04:51.244][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:51.245][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:51.246][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:51.252][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:51.253][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:51.254][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:51.256][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:51.257][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:51.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:51.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.262][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:51.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:51.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.267][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:51.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:51.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:51.272][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:51.273][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:51.274][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:51.280][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:51.282][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:51.283][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:51.284][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:51.285][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:51.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:51.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.291][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:51.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:51.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.296][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:51.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:51.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:51.301][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:51.302][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:51.303][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:51.310][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:51.311][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:51.312][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:51.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:51.315][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:51.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:51.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.321][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:51.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:51.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.326][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:51.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:51.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:51.331][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:51.332][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:51.333][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:51.339][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:51.341][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:51.342][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:51.343][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:51.344][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:51.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:51.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.349][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:51.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:51.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.355][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:51.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:51.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:51.360][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:04:51.362][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:51.363][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:51.364][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:51.371][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:51.372][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:51.373][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:51.374][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:51.375][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.380][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.385][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:51.387][private$selectFields]
biodb.TRACE[2024-12-07 16:04:51.388][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:04:51.389][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:04:51.390][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:51.391][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.393][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.394][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.395][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.396][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.398][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.399][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.400][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.401][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:51.403][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:51.404][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.405][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.406][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.407][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.409][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:04:51.410][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.415][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.420][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.425][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2024-12-07 16:04:51.427][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:51.428][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:51.429][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:51.435][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:51.436][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:51.437][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:51.438][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:51.440][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.445][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.450][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:51.451][private$selectFields]
biodb.TRACE[2024-12-07 16:04:51.452][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:04:51.453][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:04:51.454][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:51.455][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.457][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.458][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.459][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.460][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.462][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.463][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.464][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.465][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:51.467][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:51.468][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.469][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.470][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.471][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.473][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:04:51.474][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.479][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.484][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.489][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [8021].
biodb.DEBUG[2024-12-07 16:04:51.491][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:51.492][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:51.493][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:51.499][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:51.500][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:51.501][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:51.503][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:51.504][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.509][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.514][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:51.515][private$selectFields]
biodb.TRACE[2024-12-07 16:04:51.517][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:04:51.518][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:04:51.519][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:51.520][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.522][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.523][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.524][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.526][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.527][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.528][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.529][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.531][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:51.532][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:51.533][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.534][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.536][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.537][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.538][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:04:51.539][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.544][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.549][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.555][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [30382].
biodb.DEBUG[2024-12-07 16:04:51.556][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:04:51.557][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:04:51.560][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:51.561][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:51.562][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:51.568][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:51.569][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:51.570][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:51.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:51.575][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:04:51.579][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:04:51.581][cch$loadFileContent] Trying to load 1 files from cache: [1]: "152225e020c3e5947a0f5a90f021cee7".
biodb.TRACE[2024-12-07 16:04:51.583][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:04:51.584][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/152225e020c3e5947a0f5a90f021cee7.content".
biodb.DEBUG[2024-12-07 16:04:51.588][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:51.590][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:51.591][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:51.597][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:51.598][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:51.599][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:51.601][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:51.602][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:51.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:51.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.607][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:51.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:51.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.612][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:51.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:51.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:51.617][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:51.618][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:51.619][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:51.625][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:51.627][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:51.628][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:51.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:51.630][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:51.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:51.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.635][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:51.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:51.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.640][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:51.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:51.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:51.653][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:51.654][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:51.655][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:51.662][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:51.663][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:51.665][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:51.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:51.667][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:51.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:51.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.673][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:51.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:51.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.678][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:51.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:51.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:51.683][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:51.684][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:51.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:51.693][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:51.694][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:51.695][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:51.696][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:51.698][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:51.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:51.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.703][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:51.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:51.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.708][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:51.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:51.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:51.713][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:51.714][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:51.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:51.722][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:51.724][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:51.725][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:51.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:51.727][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:51.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:51.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.733][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:51.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:51.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.738][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:51.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:51.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:51.743][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:51.744][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:51.745][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:51.752][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:51.754][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:51.755][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:51.756][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:51.758][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:51.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:51.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.763][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:51.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:51.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.768][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:51.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:51.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:51.774][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:51.775][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:51.777][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:51.783][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:51.785][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:51.786][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:51.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:51.789][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:51.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:51.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.795][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:51.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:51.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.800][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:51.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:51.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:51.806][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:04:51.808][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:51.809][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:51.810][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:51.817][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:51.818][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:51.819][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:51.820][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:51.822][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.827][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.832][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:51.833][private$selectFields]
biodb.TRACE[2024-12-07 16:04:51.835][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:04:51.836][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:04:51.837][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:51.839][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.840][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.841][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.843][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.844][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.845][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.848][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.849][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:51.851][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:51.852][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.853][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.856][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.857][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:04:51.858][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.864][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.869][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.874][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65530].
biodb.DEBUG[2024-12-07 16:04:51.876][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:51.877][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:51.878][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:51.884][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:51.886][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:51.887][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:51.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:51.889][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.894][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.899][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:51.901][private$selectFields]
biodb.TRACE[2024-12-07 16:04:51.902][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:04:51.903][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:04:51.904][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:51.905][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.907][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.908][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.909][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.910][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.912][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.913][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.914][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.916][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:51.917][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:51.918][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.919][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.921][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.922][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.923][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:04:51.925][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.930][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.935][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.940][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [90204].
biodb.DEBUG[2024-12-07 16:04:51.942][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:51.943][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:51.944][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:51.950][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:51.951][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:51.952][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:51.954][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:51.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.960][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.965][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:51.966][private$selectFields]
biodb.TRACE[2024-12-07 16:04:51.968][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:04:51.969][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:04:51.970][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:51.971][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.973][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.975][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.976][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.978][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.980][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.981][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:51.983][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:51.984][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.985][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.988][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.989][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:04:51.990][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:51.995][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:51.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:51.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.000][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.006][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132793].
biodb.DEBUG[2024-12-07 16:04:52.007][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:04:52.008][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:04:52.010][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:52.012][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:52.013][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:52.019][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:52.020][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:52.022][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:52.023][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:52.026][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:04:52.031][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:04:52.032][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9686ce9c957a368dd8f5b4cc9c5b15b3".
biodb.TRACE[2024-12-07 16:04:52.034][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:04:52.036][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9686ce9c957a368dd8f5b4cc9c5b15b3.content".
biodb.DEBUG[2024-12-07 16:04:52.039][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:52.040][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:52.041][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:52.048][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:52.049][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:52.050][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:52.051][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:52.053][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.058][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.063][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:52.069][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:52.070][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:52.071][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:52.078][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:52.079][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:52.080][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:52.081][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:52.083][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.095][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.100][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:52.106][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:04:52.110][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:04:52.111][cch$loadFileContent] Trying to load 1 files from cache: [1]: "5d833e77a1be58060d0c3916a1e1b293".
biodb.TRACE[2024-12-07 16:04:52.113][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:04:52.114][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5d833e77a1be58060d0c3916a1e1b293.content".
biodb.DEBUG[2024-12-07 16:04:52.117][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:52.118][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:52.119][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:52.125][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:52.127][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:52.128][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:52.129][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:52.130][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.135][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.140][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:52.145][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:52.146][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:52.147][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:52.153][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:52.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:52.155][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:52.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:52.158][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.163][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.167][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:52.172][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:52.173][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:52.175][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:52.181][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:52.182][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:52.183][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:52.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:52.185][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.190][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.195][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:52.200][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:04:52.202][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:52.203][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:52.204][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:52.210][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:52.211][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:52.212][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:52.214][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:52.215][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.220][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.225][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:52.226][private$selectFields]
biodb.TRACE[2024-12-07 16:04:52.227][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:04:52.228][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:04:52.230][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:52.231][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.232][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.233][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.234][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.236][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.237][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.238][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.239][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.241][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:52.242][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:52.243][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.244][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.245][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.247][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.248][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:04:52.249][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.254][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.259][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.264][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51836].
biodb.DEBUG[2024-12-07 16:04:52.265][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:52.267][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:52.268][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:52.274][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:52.275][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:52.276][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:52.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:52.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.283][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.288][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:52.289][private$selectFields]
biodb.TRACE[2024-12-07 16:04:52.291][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:04:52.292][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:04:52.293][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:52.294][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.296][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.297][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.298][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.299][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.300][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.302][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.303][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.304][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:52.305][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:52.306][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.308][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.310][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.311][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:04:52.312][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.317][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.323][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.328][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51837].
biodb.DEBUG[2024-12-07 16:04:52.329][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:52.330][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:52.331][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:52.338][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:52.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:52.340][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:52.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:52.342][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.347][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.352][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:52.354][private$selectFields]
biodb.TRACE[2024-12-07 16:04:52.355][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:04:52.356][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:04:52.357][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:52.358][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.360][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.361][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.362][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.363][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.365][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.367][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.368][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:52.369][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:52.371][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.372][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.373][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.374][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.376][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:04:52.377][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.382][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.387][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.392][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132205].
biodb.DEBUG[2024-12-07 16:04:52.393][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:04:52.395][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:04:52.420][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:52.421][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:52.422][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:52.428][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:52.430][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:52.431][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:52.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:52.435][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:04:52.439][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:04:52.441][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-12-07 16:04:52.443][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:04:52.444][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-12-07 16:04:52.447][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:52.448][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:52.449][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:52.455][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:52.456][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:52.457][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:52.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:52.460][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.465][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.470][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:52.476][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:04:52.480][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:04:52.482][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-12-07 16:04:52.483][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:04:52.485][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-12-07 16:04:52.488][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:52.489][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:52.490][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:52.496][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:52.497][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:52.499][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:52.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:52.501][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.512][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.518][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:52.523][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:52.524][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:52.525][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:52.531][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:52.533][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:52.534][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:52.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:52.536][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.541][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.546][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:52.551][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:04:52.553][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:52.554][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:52.555][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:52.562][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:52.563][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:52.564][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:52.565][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:52.566][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.571][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.576][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:52.577][private$selectFields]
biodb.TRACE[2024-12-07 16:04:52.579][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:04:52.580][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:04:52.581][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:52.582][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.583][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.586][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.587][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.589][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.591][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.592][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:52.593][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:52.594][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.596][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.598][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.599][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:04:52.601][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.605][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.610][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.616][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2024-12-07 16:04:52.617][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:52.618][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:52.619][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:52.625][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:52.626][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:52.627][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:52.628][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:52.630][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.635][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.640][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:52.641][private$selectFields]
biodb.TRACE[2024-12-07 16:04:52.642][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:04:52.643][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:04:52.644][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:52.645][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.647][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.649][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.650][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.652][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.654][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.655][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:52.656][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:52.658][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.659][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.661][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.663][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:04:52.664][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.669][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.674][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.679][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-12-07 16:04:52.680][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:52.681][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:52.682][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:52.688][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:52.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:52.691][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:52.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:52.693][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.698][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.703][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:52.704][private$selectFields]
biodb.TRACE[2024-12-07 16:04:52.705][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:04:52.707][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:04:52.708][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:52.709][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.710][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.712][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.713][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.714][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.715][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.716][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.718][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.719][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:52.720][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:52.721][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.722][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.724][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.725][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.726][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:04:52.727][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.732][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.737][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.742][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2024-12-07 16:04:52.744][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:04:52.745][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:04:52.747][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:52.748][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:52.749][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:52.756][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:52.757][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:52.758][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:52.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:52.762][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:04:52.767][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:04:52.768][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2024-12-07 16:04:52.770][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:04:52.771][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2024-12-07 16:04:52.774][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:52.775][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:52.776][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:52.782][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:52.784][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:52.785][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:52.786][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:52.787][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.792][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.797][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:52.802][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:52.803][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:52.804][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:52.811][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:52.812][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:52.813][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:52.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:52.815][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.820][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.825][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:52.831][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:04:52.835][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:04:52.837][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2024-12-07 16:04:52.838][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:04:52.840][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2024-12-07 16:04:52.843][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:52.844][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:52.845][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:52.851][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:52.852][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:52.854][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:52.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:52.856][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.861][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.866][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:52.871][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:52.872][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:52.873][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:52.879][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:52.880][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:52.881][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:52.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:52.884][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.889][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.894][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:52.899][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:52.900][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:52.901][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:52.907][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:52.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:52.909][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:52.911][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:52.912][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.917][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.928][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:52.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:52.934][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:04:52.936][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:52.937][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:52.938][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:52.944][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:52.945][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:52.946][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:52.947][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:52.949][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.954][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.958][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:52.960][private$selectFields]
biodb.TRACE[2024-12-07 16:04:52.961][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:04:52.962][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:04:52.963][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:52.964][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.966][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.968][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.969][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.970][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.972][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.973][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.974][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:52.975][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:52.976][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.978][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.980][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.981][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:04:52.982][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.987][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.992][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:52.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:52.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:52.997][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-12-07 16:04:52.999][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:53.000][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:53.001][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:53.007][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:53.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:53.009][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:53.010][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:53.012][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.017][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.022][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:53.023][private$selectFields]
biodb.TRACE[2024-12-07 16:04:53.024][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:04:53.025][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:04:53.026][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:53.028][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.029][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.031][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.032][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.034][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.035][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.036][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.037][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:53.039][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:53.040][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.041][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.043][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.045][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:04:53.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.051][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.056][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.061][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2024-12-07 16:04:53.062][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:53.063][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:53.064][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:53.071][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:53.072][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:53.073][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:53.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:53.075][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.080][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.085][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:53.086][private$selectFields]
biodb.TRACE[2024-12-07 16:04:53.088][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:04:53.089][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:04:53.090][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:53.091][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.093][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.095][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.096][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.097][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.099][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.100][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.101][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:53.102][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:53.103][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.105][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.106][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.107][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.108][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:04:53.110][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.115][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.119][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.125][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2024-12-07 16:04:53.126][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:04:53.127][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:04:53.130][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:53.131][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:53.132][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:53.138][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:53.139][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:53.140][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:53.141][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:53.145][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:04:53.149][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:04:53.151][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2024-12-07 16:04:53.153][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:04:53.154][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2024-12-07 16:04:53.157][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:53.158][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:53.159][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:53.166][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:53.167][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:53.168][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:53.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:53.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.175][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.180][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:53.186][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:53.187][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:53.188][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:53.194][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:53.195][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:53.196][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:53.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:53.199][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.204][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.209][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:53.214][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:53.215][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:53.216][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:53.223][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:53.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:53.225][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:53.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:53.227][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.232][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.237][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:53.242][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:53.243][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:53.244][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:53.251][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:53.252][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:53.253][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:53.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:53.255][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.260][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.265][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:53.270][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:53.271][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:53.273][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:53.279][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:53.280][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:53.281][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:53.282][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:53.284][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.289][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.293][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:53.298][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:53.300][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:53.301][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:53.307][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:53.308][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:53.309][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:53.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:53.312][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.317][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.322][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:53.327][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:53.328][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:53.329][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:53.336][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:53.337][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:53.338][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:53.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:53.348][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.354][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.359][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:53.364][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:53.365][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:53.366][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:53.373][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:53.374][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:53.375][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:53.376][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:53.378][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.383][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.388][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:53.394][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:04:53.398][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:04:53.400][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2024-12-07 16:04:53.401][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:04:53.403][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2024-12-07 16:04:53.406][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:53.407][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:53.408][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:53.414][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:53.415][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:53.416][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:53.418][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:53.419][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.424][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.429][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:53.434][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:53.435][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:53.436][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:53.442][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:53.444][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:53.445][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:53.446][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:53.447][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.452][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.457][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:53.462][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:53.464][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:53.465][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:53.471][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:53.472][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:53.473][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:53.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:53.476][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.481][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.486][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:53.491][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:04:53.493][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:53.495][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:53.496][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:53.502][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:53.503][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:53.505][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:53.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:53.507][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.517][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:53.519][private$selectFields]
biodb.TRACE[2024-12-07 16:04:53.520][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:04:53.521][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:04:53.522][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:53.524][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.525][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.526][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.527][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.529][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.530][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.531][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.532][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.534][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:53.535][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:53.536][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.538][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.540][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.541][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:04:53.542][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.548][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.553][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.558][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-12-07 16:04:53.560][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:53.561][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:53.562][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:53.568][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:53.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:53.571][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:53.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:53.573][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.579][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.584][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:53.586][private$selectFields]
biodb.TRACE[2024-12-07 16:04:53.587][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:04:53.588][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:04:53.590][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:53.591][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.593][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.594][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.595][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.596][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.598][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.599][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.600][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.602][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:53.603][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:53.604][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.606][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.607][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.608][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.609][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:04:53.611][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.616][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.621][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.626][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2024-12-07 16:04:53.627][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:53.628][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:53.630][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:53.636][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:53.637][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:53.638][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:53.639][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:53.641][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.646][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.651][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:53.652][private$selectFields]
biodb.TRACE[2024-12-07 16:04:53.653][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:04:53.654][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:04:53.655][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:53.657][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.658][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.660][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.662][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.663][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.664][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.665][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.667][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:53.668][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:53.669][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.670][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.672][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.673][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.674][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:04:53.675][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.680][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.685][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.691][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2024-12-07 16:04:53.692][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:04:53.693][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:04:53.719][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:53.721][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:53.722][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:53.728][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:53.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:53.730][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:53.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:53.735][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:04:53.739][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:04:53.740][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2b6f29bb7a7663ff23fb5e7dcae5c27f".
biodb.TRACE[2024-12-07 16:04:53.742][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:04:53.744][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2b6f29bb7a7663ff23fb5e7dcae5c27f.content".
biodb.DEBUG[2024-12-07 16:04:53.747][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:53.748][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:53.749][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:53.756][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:53.757][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:53.758][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:53.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:53.761][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.776][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:53.783][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:53.784][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:53.785][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:53.791][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:53.792][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:53.794][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:53.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:53.796][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.801][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.806][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:53.811][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:53.812][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:53.813][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:53.820][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:53.821][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:53.822][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:53.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:53.825][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.830][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.835][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:53.840][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:53.841][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:53.842][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:53.848][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:53.849][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:53.850][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:53.851][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:53.853][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.858][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.863][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:53.868][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:53.869][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:53.870][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:53.876][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:53.878][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:53.879][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:53.880][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:53.881][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.886][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.891][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:53.897][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:53.898][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:53.899][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:53.905][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:53.906][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:53.907][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:53.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:53.910][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.915][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.920][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:53.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:53.925][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:04:53.927][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:53.928][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:53.929][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:53.936][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:53.937][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:53.938][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:53.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:53.941][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.946][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.951][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:53.952][private$selectFields]
biodb.TRACE[2024-12-07 16:04:53.953][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:04:53.954][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:04:53.956][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:53.957][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.958][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.961][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.962][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.963][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.966][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.967][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:53.968][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:53.969][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.971][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.972][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.973][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.975][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:04:53.976][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.981][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.986][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:53.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:53.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:53.992][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-12-07 16:04:53.994][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:53.995][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:53.996][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:54.002][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:54.003][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:54.004][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:54.005][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:54.007][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.012][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.017][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:54.018][private$selectFields]
biodb.TRACE[2024-12-07 16:04:54.019][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:04:54.020][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:04:54.021][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:54.023][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.024][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.026][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.027][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.029][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.031][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.032][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:54.033][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:54.035][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.036][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.038][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.039][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:04:54.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.050][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.056][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [28243].
biodb.DEBUG[2024-12-07 16:04:54.057][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:54.058][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:54.059][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:54.065][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:54.066][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:54.067][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:54.068][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:54.070][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.075][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.080][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:54.081][private$selectFields]
biodb.TRACE[2024-12-07 16:04:54.082][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:04:54.083][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:04:54.084][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:54.085][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.087][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.089][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.090][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.091][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.094][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.095][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:54.096][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:54.097][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.099][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.101][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.102][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:04:54.103][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.108][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.113][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.118][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [78144].
biodb.DEBUG[2024-12-07 16:04:54.119][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:04:54.121][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:04:54.123][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:54.124][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:54.125][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:54.131][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:54.132][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:54.133][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:54.134][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:54.138][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:04:54.142][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:04:54.143][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9a13652ab89a613a3b0e10d3b6cb10a0".
biodb.TRACE[2024-12-07 16:04:54.145][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:04:54.147][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9a13652ab89a613a3b0e10d3b6cb10a0.content".
biodb.DEBUG[2024-12-07 16:04:54.152][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:54.153][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:54.154][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:54.160][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:54.161][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:54.162][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:54.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:54.165][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.175][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:54.180][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:54.181][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:54.182][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:54.188][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:54.196][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:54.197][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:54.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:54.200][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.205][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.210][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:54.215][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:54.217][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:54.218][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:54.224][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:54.225][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:54.226][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:54.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:54.229][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.234][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.239][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:54.244][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:04:54.246][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:54.247][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:54.248][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:54.254][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:54.255][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:54.256][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:54.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:54.259][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.264][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.269][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:54.270][private$selectFields]
biodb.TRACE[2024-12-07 16:04:54.271][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:04:54.272][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:04:54.273][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:54.274][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.276][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.277][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.278][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.279][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.281][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.283][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.284][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:54.286][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:54.287][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.288][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.291][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.292][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:04:54.293][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.298][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.303][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.309][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-12-07 16:04:54.310][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:54.311][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:54.312][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:54.318][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:54.320][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:54.321][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:54.322][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:54.323][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.328][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.333][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:54.334][private$selectFields]
biodb.TRACE[2024-12-07 16:04:54.336][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:04:54.337][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:04:54.338][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:54.339][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.341][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.343][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.344][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.346][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.348][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.349][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:54.351][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:54.352][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.353][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.355][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.357][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:04:54.358][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.363][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.368][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.373][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2024-12-07 16:04:54.375][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:54.376][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:54.377][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:54.383][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:54.385][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:54.386][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:54.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:54.388][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.393][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.398][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:54.399][private$selectFields]
biodb.TRACE[2024-12-07 16:04:54.401][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:04:54.402][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:04:54.403][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:54.404][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.406][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.407][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.408][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.409][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.411][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.412][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.413][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.414][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:54.416][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:54.417][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.418][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.419][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.420][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.422][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:04:54.423][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.428][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.433][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:54.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.438][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2024-12-07 16:04:54.440][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:04:54.441][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:04:54.443][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:54.444][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:54.445][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:54.452][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:54.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:54.454][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:54.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:54.459][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:04:54.463][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:04:54.464][cch$loadFileContent] Trying to load 1 files from cache: [1]: "a985300ab8a01d49254fbf993ad91279".
biodb.TRACE[2024-12-07 16:04:54.466][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:04:54.468][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a985300ab8a01d49254fbf993ad91279.content".
biodb.DEBUG[2024-12-07 16:04:54.471][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:54.473][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:54.474][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:54.480][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:54.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:54.482][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:54.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:54.485][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.490][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.495][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:54.500][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:54.501][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:54.503][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:54.509][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:54.510][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:54.511][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:54.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:54.514][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.519][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.524][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:54.529][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:54.530][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:54.531][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:54.537][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:54.538][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:54.539][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:54.540][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:54.542][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.547][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.552][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:54.557][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:54.558][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:54.559][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:54.565][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:54.566][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:54.567][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:54.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:54.570][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.575][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.580][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:54.585][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:54.586][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:54.587][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:54.593][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:54.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:54.596][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:54.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:54.598][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.603][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.608][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:54.620][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:54.621][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:54.622][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:54.629][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:54.630][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:54.631][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:54.632][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:54.634][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.639][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.644][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:54.648][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:54.650][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:54.651][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:54.657][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:54.658][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:54.659][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:54.660][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:54.662][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.667][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.672][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:54.677][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:54.678][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:54.679][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:54.685][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:54.687][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:54.688][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:54.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:54.690][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.695][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.700][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:54.705][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:54.706][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:54.707][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:54.713][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:54.714][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:54.715][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:54.716][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:54.718][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.723][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.727][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:54.732][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:54.733][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:54.734][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:54.741][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:54.742][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:54.743][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:54.744][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:54.745][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.750][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.755][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:54.760][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:54.761][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:54.762][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:54.768][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:54.770][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:54.771][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:54.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:54.773][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.778][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.783][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:54.788][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:54.789][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:54.790][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:54.796][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:54.797][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:54.798][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:54.800][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:54.801][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.806][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.811][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:54.816][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:54.817][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:54.818][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:54.824][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:54.825][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:54.826][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:54.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:54.829][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.834][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.839][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:54.843][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:54.844][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:54.846][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:54.852][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:54.853][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:54.854][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:54.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:54.857][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.861][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.866][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:54.871][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:54.872][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:54.874][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:54.880][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:54.881][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:54.882][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:54.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:54.885][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.890][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.895][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:54.899][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:54.901][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:54.902][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:54.908][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:54.910][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:54.911][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:54.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:54.913][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.918][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.924][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:54.929][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:54.930][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:54.931][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:54.937][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:54.938][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:54.939][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:54.941][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:54.942][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.947][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.952][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:54.957][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:54.958][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:54.960][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:54.966][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:54.967][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:54.968][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:54.969][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:54.971][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.976][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:54.981][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:54.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:54.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:54.986][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:54.987][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:54.988][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:54.994][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:54.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:54.997][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:54.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:54.999][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:55.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:55.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:55.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:55.004][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:55.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:55.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:55.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:55.009][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:55.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:55.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:55.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:55.014][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:55.015][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:55.016][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:55.022][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:55.024][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:55.025][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:55.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:55.027][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:55.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:55.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:55.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:55.039][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:55.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:55.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:55.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:55.044][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:55.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:55.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:55.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:55.049][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:55.050][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:55.052][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:55.058][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:55.059][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:55.060][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:55.061][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:55.063][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:55.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:55.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:55.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:55.068][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:55.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:55.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:55.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:55.072][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:55.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:55.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:55.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:55.077][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:55.078][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:55.080][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:55.086][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:55.087][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:55.088][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:55.089][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:55.091][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:55.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:55.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:55.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:55.096][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:55.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:55.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:55.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:55.101][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:55.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:55.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:55.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:55.106][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:55.107][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:55.108][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:55.114][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:55.115][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:55.116][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:55.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:55.119][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:55.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:55.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:55.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:55.124][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:55.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:55.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:55.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:55.129][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:55.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:55.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:55.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:55.134][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:55.135][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:55.136][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:55.142][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:55.143][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:55.145][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:55.146][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:55.147][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:55.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:55.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:55.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:55.152][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:55.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:55.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:55.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:55.157][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:55.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:55.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:55.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:55.162][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:55.163][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:55.164][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:55.170][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:55.172][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:55.173][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:55.174][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:55.175][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:55.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:55.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:55.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:55.181][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:55.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:55.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:55.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:55.186][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:55.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:55.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:55.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:55.191][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:55.192][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:55.193][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:55.199][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:55.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:55.202][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:55.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:55.205][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:55.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:55.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:55.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:55.211][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:55.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:55.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:55.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:55.216][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:55.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:55.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:55.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:55.222][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:55.223][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:55.224][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:55.231][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:55.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:55.234][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:55.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:55.236][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:55.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:55.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:55.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:55.241][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:55.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:55.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:55.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:55.246][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:55.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:55.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:55.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:55.251][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:55.252][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:55.253][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:55.259][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:55.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:55.262][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:55.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:55.264][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:55.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:55.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:55.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:55.269][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:55.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:55.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:55.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:55.274][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:55.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:55.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:55.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:55.279][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:04:55.281][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:55.282][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:55.283][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:55.289][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:55.291][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:55.292][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:55.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:55.294][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:55.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:55.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:55.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:55.299][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:55.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:55.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:55.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:55.305][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:55.306][private$selectFields]
biodb.TRACE[2024-12-07 16:04:55.307][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:04:55.308][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:04:55.309][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:55.311][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:55.312][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:55.313][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:55.314][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:55.316][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:55.317][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:55.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:55.319][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:55.320][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:55.322][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:55.323][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:55.324][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:55.325][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:55.327][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:55.328][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:04:55.329][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:55.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:55.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:55.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:55.334][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:55.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:55.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:55.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:55.339][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:55.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:55.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:55.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:55.344][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-12-07 16:04:55.346][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:55.347][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:55.348][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:55.354][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:55.355][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:55.356][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:55.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:55.359][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:55.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:55.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:55.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:55.364][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:55.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:55.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:55.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:55.369][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:55.370][private$selectFields]
biodb.TRACE[2024-12-07 16:04:55.371][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:04:55.372][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:04:55.374][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:55.375][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:55.376][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:55.377][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:55.378][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:55.380][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:55.381][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:55.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:55.383][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:55.385][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:55.386][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:55.387][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:55.388][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:55.390][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:55.391][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:55.392][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:04:55.393][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:55.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:55.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:55.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:55.398][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:55.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:55.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:55.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:55.403][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:55.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:55.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:55.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:55.409][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2024-12-07 16:04:55.410][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:55.411][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:55.412][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:55.418][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:55.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:55.421][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:55.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:55.423][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:55.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:55.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:55.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:55.428][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:55.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:55.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:55.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:55.433][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:55.434][private$selectFields]
biodb.TRACE[2024-12-07 16:04:55.436][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:04:55.437][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:04:55.438][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:55.439][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:55.441][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:55.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:55.443][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:55.444][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:55.446][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:55.447][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:55.448][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:55.449][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:55.456][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:55.458][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:55.459][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:55.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:55.462][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:55.463][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:04:55.465][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:55.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:55.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:55.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:55.470][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:55.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:55.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:55.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:55.475][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:55.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:55.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:55.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:55.480][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2024-12-07 16:04:55.481][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:04:55.482][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-12-07 16:04:55.505][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:55.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:55.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:55.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:55.510][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:55.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:55.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:55.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:55.515][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:55.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:55.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:55.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:55.520][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:55.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:55.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:55.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:55.525][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:55.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:55.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:55.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:55.529][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:55.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:55.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:55.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:55.534][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:55.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:55.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:55.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:55.539][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:55.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:55.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:55.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:55.544][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:55.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:55.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:55.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:55.549][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:55.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:55.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:55.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:55.554][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:55.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:55.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:55.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:55.559][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:55.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:55.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:55.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:55.567][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:55.568][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:55.569][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:55.575][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:55.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:55.577][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:55.578][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:55.582][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:04:55.586][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:04:55.587][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:04:55.590][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-12-07 16:04:56.041][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-12-07 16:04:56.580][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:04:56.583][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.content"
biodb.TRACE[2024-12-07 16:04:56.588][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.request"
biodb.DEBUG[2024-12-07 16:04:56.597][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:56.598][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:56.599][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:56.606][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:56.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:56.608][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:56.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:56.611][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:56.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:56.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:56.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:56.616][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:56.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:56.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:56.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:56.620][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:56.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:56.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:56.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:56.626][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:56.627][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:56.628][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:56.634][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:56.635][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:56.636][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:56.637][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:56.639][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:56.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:56.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:56.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:56.644][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:56.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:56.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:56.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:56.649][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:56.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:56.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:56.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:56.654][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:56.655][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:56.656][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:56.662][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:56.663][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:56.664][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:56.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:56.667][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:56.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:56.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:56.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:56.672][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:56.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:56.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:56.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:56.677][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:56.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:56.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:56.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:56.682][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:56.683][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:56.684][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:56.690][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:56.691][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:56.693][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:56.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:56.695][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:56.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:56.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:56.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:56.700][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:56.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:56.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:56.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:56.705][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:56.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:56.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:56.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:56.710][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:56.711][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:56.712][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:56.719][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:56.720][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:56.721][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:56.722][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:56.723][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:56.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:56.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:56.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:56.728][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:56.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:56.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:56.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:56.733][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:56.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:56.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:56.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:56.738][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:56.739][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:56.741][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:56.747][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:56.748][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:56.749][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:56.750][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:56.752][private$loadEntries] Creating entries from ids [1]: "9442".
biodb.DEBUG[2024-12-07 16:04:56.753][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:04:56.755][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9442".
biodb.TRACE[2024-12-07 16:04:56.756][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:04:56.758][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:04:56.759][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:04:56.760][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:04:56.762][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:04:56.763][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:04:56.766][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:56.767][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:56.768][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:56.774][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:56.776][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:56.777][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:56.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:56.779][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9442".
biodb.DEBUG[2024-12-07 16:04:56.783][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:04:56.784][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:04:56.786][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9442".
biodb.TRACE[2024-12-07 16:04:57.274][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9442).
biodb.DEBUG[2024-12-07 16:04:57.778][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:04:57.781][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7d1576b26aed79f4c1d758a3f87c749b.content"
biodb.TRACE[2024-12-07 16:04:57.785][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7d1576b26aed79f4c1d758a3f87c749b.request"
biodb.TRACE[2024-12-07 16:04:57.788][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9442.xml"
biodb.DEBUG[2024-12-07 16:04:57.790][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:04:57.792][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:04:57.793][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:04:57.795][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:57.796][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:57.797][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:57.803][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:57.804][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:57.806][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:57.807][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:57.809][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:57.811][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:57.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:57.813][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:57.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:57.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:57.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:57.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:57.820][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:57.821][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:57.822][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:57.823][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:57.825][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:57.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:57.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:57.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:57.830][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:57.831][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:57.832][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:57.834][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:57.835][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:57.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:57.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:57.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:57.840][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:57.841][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:57.843][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:57.844][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:57.845][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:57.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:57.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:57.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:57.863][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:57.864][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:57.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:57.867][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:57.868][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:57.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:57.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:57.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:57.874][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:57.875][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:57.876][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:57.877][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:57.879][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:57.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:57.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:57.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:57.884][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:57.885][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:57.886][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:57.888][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:57.889][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:57.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:57.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:57.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:57.894][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:57.896][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:57.897][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:57.898][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:57.899][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:57.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:57.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:57.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:57.904][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:57.906][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:57.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:57.908][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:57.910][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:57.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:57.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:57.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:57.915][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:57.916][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:57.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:57.919][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:57.920][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:57.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:57.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:57.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:57.925][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:57.926][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:57.928][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:57.929][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:57.930][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:57.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:57.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:57.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:57.935][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:57.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:57.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:57.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:57.940][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:57.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:57.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:57.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:57.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:57.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:57.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:57.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:57.950][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:57.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:57.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:57.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:57.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:57.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:57.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:57.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:57.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:57.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:57.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:57.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:57.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:57.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:57.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:57.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:57.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:57.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:57.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:57.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:57.975][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:57.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:57.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:57.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:57.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:57.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:57.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:57.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:57.985][self$createEntryFromContent] Accession numbers: 9442.
biodb.TRACE[2024-12-07 16:04:57.986][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:57.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:57.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:57.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:57.991][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:57.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:57.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:57.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:57.996][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:57.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:57.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:58.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:58.001][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:58.002][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:58.004][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:58.010][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:58.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:58.012][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:58.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:58.015][private$loadEntries] Creating entries from ids [1]: "34764".
biodb.DEBUG[2024-12-07 16:04:58.016][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:04:58.018][cch$loadFileContent] Trying to load 1 files from cache: [1]: "34764".
biodb.TRACE[2024-12-07 16:04:58.019][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:04:58.021][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:04:58.022][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:04:58.023][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:04:58.025][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:04:58.026][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:04:58.029][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:58.030][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:58.031][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:58.038][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:58.039][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:58.040][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:58.041][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:58.042][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=34764".
biodb.DEBUG[2024-12-07 16:04:58.046][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:04:58.047][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:04:58.049][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=34764".
biodb.TRACE[2024-12-07 16:04:58.489][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=34764).
biodb.DEBUG[2024-12-07 16:04:58.905][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:04:58.908][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a38508ac0dc37ed2da31f7bda33ae97f.content"
biodb.TRACE[2024-12-07 16:04:58.912][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a38508ac0dc37ed2da31f7bda33ae97f.request"
biodb.TRACE[2024-12-07 16:04:58.916][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/34764.xml"
biodb.DEBUG[2024-12-07 16:04:58.918][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:04:58.919][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:04:58.921][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:04:58.923][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:58.924][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:58.925][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:58.932][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:58.933][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:58.934][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:58.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:58.938][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:58.939][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:58.941][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:58.942][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:58.943][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:58.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:58.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:58.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:58.948][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:58.950][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:58.951][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:58.952][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:58.954][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:04:58.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:04:58.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:58.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:58.959][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:58.960][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:58.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:58.963][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:58.965][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:04:58.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:04:58.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:58.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:58.970][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:58.971][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:58.972][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:58.974][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:58.975][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:04:58.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:04:58.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:58.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:58.981][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:58.982][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:58.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:58.984][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:58.986][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:04:58.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:04:58.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:58.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:58.991][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:58.993][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:58.994][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:58.995][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:58.997][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:58.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:04:58.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:59.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:59.002][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:59.003][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:59.005][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:59.006][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:59.007][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:04:59.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:04:59.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:59.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:59.012][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:59.014][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:59.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:59.016][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:59.018][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:59.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:59.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:59.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:59.023][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:59.024][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:59.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:59.026][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:59.028][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:04:59.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:04:59.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:59.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:59.033][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:59.035][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:59.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:59.037][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:59.039][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:04:59.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:04:59.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:59.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:59.044][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:59.045][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:59.046][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:59.047][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:59.049][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:04:59.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:04:59.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:59.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:59.054][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:59.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:59.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:59.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:59.059][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:59.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:59.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:59.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:59.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:59.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:59.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:59.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:59.069][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:59.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:59.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:59.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:59.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:59.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:59.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:59.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:59.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:59.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:59.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:59.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:59.084][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:59.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:59.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:59.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:59.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:59.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:59.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:59.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:59.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:59.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:59.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:59.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:59.099][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:04:59.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:04:59.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:59.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:59.104][self$createEntryFromContent] Accession numbers: 34764.
biodb.TRACE[2024-12-07 16:04:59.105][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:59.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:59.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:59.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:59.110][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:59.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:59.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:59.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:59.115][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:59.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:04:59.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:59.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:04:59.151][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:04:59.153][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:59.155][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:59.156][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:59.162][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:59.163][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:59.164][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:59.165][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:59.167][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:59.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:59.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:59.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:59.172][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:59.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:59.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:59.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:59.177][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:59.178][private$selectFields]
biodb.TRACE[2024-12-07 16:04:59.179][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:04:59.180][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:04:59.182][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:59.183][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:59.184][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:59.185][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:59.186][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:59.188][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:59.189][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:59.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:59.191][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:59.193][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:59.194][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:59.195][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:59.196][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:59.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:59.199][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:59.200][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:04:59.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:59.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:59.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:59.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:59.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:59.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:59.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:59.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:59.211][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:59.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:59.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:59.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:59.216][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2024-12-07 16:04:59.218][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:59.219][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:59.220][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:59.226][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:59.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:59.228][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:59.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:59.231][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:59.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:59.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:59.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:59.235][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:59.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:59.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:59.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:59.240][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:59.242][private$selectFields]
biodb.TRACE[2024-12-07 16:04:59.243][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:04:59.244][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:04:59.245][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:59.246][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:59.248][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:59.249][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:59.250][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:59.251][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:59.252][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:59.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:59.255][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:59.256][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:59.257][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:59.258][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:59.260][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:59.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:59.262][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:59.263][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:04:59.265][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:59.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:59.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:59.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:59.270][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:59.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:59.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:59.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:59.275][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:59.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:59.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:59.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:59.280][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-12-07 16:04:59.281][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:59.282][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:59.283][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:59.290][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:59.291][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:59.292][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:59.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:04:59.295][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:59.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:59.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:59.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:59.299][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:59.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:59.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:59.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:59.304][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:59.306][private$selectFields]
biodb.TRACE[2024-12-07 16:04:59.307][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:04:59.308][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:04:59.309][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:59.310][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:59.312][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:59.313][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:59.314][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:59.315][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:59.317][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:59.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:59.319][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:59.320][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:59.321][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:04:59.322][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:59.324][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:59.325][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:59.326][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:59.327][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:04:59.329][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:59.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:59.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:59.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:59.334][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:59.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:59.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:59.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:59.338][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:04:59.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:04:59.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:04:59.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:04:59.344][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [34764].
biodb.DEBUG[2024-12-07 16:04:59.346][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:04:59.347][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:04:59.350][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:04:59.351][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:04:59.353][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:04:59.360][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:04:59.361][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:04:59.363][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:04:59.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:04:59.368][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:04:59.373][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:04:59.374][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:04:59.377][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-12-07 16:04:59.846][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-12-07 16:05:00.487][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:05:00.489][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365d4ea5e0e90826806fec708da6c9ab.content"
biodb.TRACE[2024-12-07 16:05:00.495][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365d4ea5e0e90826806fec708da6c9ab.request"
biodb.DEBUG[2024-12-07 16:05:00.507][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:00.508][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:00.509][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:00.515][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:00.516][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:00.518][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:00.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:00.520][private$loadEntries] Creating entries from ids [1]: "2535".
biodb.DEBUG[2024-12-07 16:05:00.521][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:00.523][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2535".
biodb.TRACE[2024-12-07 16:05:00.525][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:05:00.526][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:05:00.528][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:00.529][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:05:00.531][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:05:00.532][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:05:00.536][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:00.537][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:00.539][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:00.546][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:00.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:00.549][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:00.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:00.552][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2535".
biodb.DEBUG[2024-12-07 16:05:00.556][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:05:00.558][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:05:00.560][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2535".
biodb.TRACE[2024-12-07 16:05:00.997][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2535).
biodb.DEBUG[2024-12-07 16:05:07.432][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:05:07.435][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e1d9514645c3005d4e4f643b2d18f099.content"
biodb.TRACE[2024-12-07 16:05:07.444][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e1d9514645c3005d4e4f643b2d18f099.request"
biodb.TRACE[2024-12-07 16:05:07.452][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2535.xml"
biodb.DEBUG[2024-12-07 16:05:07.454][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:05:07.456][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:07.462][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:07.464][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:07.466][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:07.467][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:07.475][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:07.476][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:07.477][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:07.479][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:07.481][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:07.483][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:07.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:07.485][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:07.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:07.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:07.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:07.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:07.492][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:07.493][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:07.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:07.496][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:07.498][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:07.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:07.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:07.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:07.503][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:07.504][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:07.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:07.507][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:07.508][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:07.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:07.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:07.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:07.514][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:07.515][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:07.516][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:07.518][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:07.519][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:07.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:07.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:07.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:07.524][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:07.526][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:07.527][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:07.528][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:07.530][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:07.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:07.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:07.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:07.535][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:07.536][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:07.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:07.539][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:07.541][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:07.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:07.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:07.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:07.547][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:07.549][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:07.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:07.551][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:07.553][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:07.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:07.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:07.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:07.558][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:07.559][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:07.561][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:07.562][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:07.563][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:07.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:07.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:07.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:07.569][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:07.570][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:07.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:07.572][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:07.587][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:07.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:07.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:07.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:07.593][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:07.594][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:07.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:07.596][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:07.598][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:07.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:07.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:07.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:07.603][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:07.605][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:07.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:07.607][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:07.609][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:07.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:07.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:07.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:07.614][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:07.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:07.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:07.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:07.619][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:07.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:07.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:07.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:07.624][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:07.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:07.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:07.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:07.629][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:07.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:07.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:07.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:07.634][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:07.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:07.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:07.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:07.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:07.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:07.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:07.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:07.644][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:07.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:07.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:07.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:07.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:07.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:07.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:07.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:07.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:07.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:07.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:07.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:07.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:07.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:07.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:07.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:07.665][self$createEntryFromContent] Accession numbers: 2535.
biodb.TRACE[2024-12-07 16:05:07.666][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:07.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:07.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:07.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:07.671][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:07.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:07.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:07.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:07.676][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:07.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:07.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:07.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:07.682][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:07.683][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:07.684][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:07.690][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:07.691][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:07.693][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:07.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:07.695][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:07.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:07.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:07.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:07.700][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:07.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:07.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:07.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:07.706][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:07.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:07.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:07.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:07.711][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:07.712][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:07.713][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:07.719][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:07.720][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:07.721][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:07.723][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:07.724][private$loadEntries] Creating entries from ids [1]: "5525".
biodb.DEBUG[2024-12-07 16:05:07.725][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:07.727][cch$loadFileContent] Trying to load 1 files from cache: [1]: "5525".
biodb.TRACE[2024-12-07 16:05:07.729][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:05:07.730][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:05:07.732][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:07.733][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:05:07.734][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:05:07.735][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:05:07.739][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:07.740][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:07.741][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:07.747][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:07.749][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:07.750][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:07.751][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:07.752][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=5525".
biodb.DEBUG[2024-12-07 16:05:07.756][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:05:07.757][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:05:07.759][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=5525".
biodb.TRACE[2024-12-07 16:05:08.205][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=5525).
biodb.DEBUG[2024-12-07 16:05:08.625][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:05:08.628][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8c1563abc6b93d34a6b6b66375881583.content"
biodb.TRACE[2024-12-07 16:05:08.632][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8c1563abc6b93d34a6b6b66375881583.request"
biodb.TRACE[2024-12-07 16:05:08.635][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5525.xml"
biodb.DEBUG[2024-12-07 16:05:08.637][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:05:08.639][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:08.640][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:08.642][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:08.643][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:08.644][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:08.651][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:08.652][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:08.653][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:08.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:08.657][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:08.658][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:08.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:08.661][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:08.662][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:08.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:08.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:08.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:08.667][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:08.669][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:08.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:08.671][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:08.673][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:08.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:08.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:08.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:08.678][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:08.679][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:08.680][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:08.682][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:08.683][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:08.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:08.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:08.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:08.688][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:08.690][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:08.691][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:08.692][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:08.694][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:08.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:08.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:08.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:08.699][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:08.700][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:08.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:08.702][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:08.704][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:08.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:08.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:08.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:08.709][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:08.710][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:08.712][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:08.713][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:08.714][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:08.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:08.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:08.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:08.720][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:08.721][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:08.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:08.723][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:08.725][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:08.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:08.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:08.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:08.730][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:08.731][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:08.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:08.734][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:08.736][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:08.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:08.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:08.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:08.741][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:08.742][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:08.744][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:08.745][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:08.747][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:08.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:08.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:08.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:08.752][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:08.753][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:08.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:08.755][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:08.757][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:08.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:08.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:08.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:08.762][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:08.764][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:08.765][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:08.766][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:08.767][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:08.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:08.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:08.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:08.773][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:08.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:08.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:08.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:08.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:08.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:08.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:08.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:08.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:08.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:08.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:08.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:08.788][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:08.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:08.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:08.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:08.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:08.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:08.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:08.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:08.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:08.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:08.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:08.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:08.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:08.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:08.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:08.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:08.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:08.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:08.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:08.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:08.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:08.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:08.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:08.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:08.818][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:08.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:08.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:08.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:08.823][self$createEntryFromContent] Accession numbers: 5525.
biodb.TRACE[2024-12-07 16:05:08.825][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:08.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:08.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:08.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:08.830][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:08.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:08.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:08.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:08.835][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:08.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:08.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:08.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:08.840][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:08.841][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:08.842][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:08.849][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:08.850][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:08.851][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:08.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:08.854][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:08.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:08.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:08.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:08.859][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:08.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:08.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:08.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:08.864][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:08.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:08.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:08.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:08.879][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:05:08.881][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:08.882][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:08.883][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:08.890][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:08.891][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:08.892][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:08.893][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:08.895][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:08.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:08.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:08.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:08.900][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:08.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:08.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:08.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:08.905][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:08.906][private$selectFields]
biodb.TRACE[2024-12-07 16:05:08.908][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:05:08.909][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:05:08.910][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:08.911][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:08.913][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:08.914][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:08.915][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:08.916][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:08.918][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:08.919][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:08.920][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:08.921][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:08.923][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:08.924][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:08.925][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:08.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:08.928][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:08.929][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:05:08.930][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:08.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:08.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:08.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:08.935][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:08.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:08.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:08.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:08.940][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:08.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:08.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:08.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:08.946][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [2535].
biodb.DEBUG[2024-12-07 16:05:08.947][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:08.948][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:08.949][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:08.956][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:08.957][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:08.958][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:08.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:08.960][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:08.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:08.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:08.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:08.966][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:08.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:08.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:08.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:08.971][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:08.972][private$selectFields]
biodb.TRACE[2024-12-07 16:05:08.973][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:05:08.974][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:05:08.975][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:08.977][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:08.978][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:08.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:08.981][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:08.982][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:08.983][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:08.984][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:08.986][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:08.987][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:08.988][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:08.990][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:08.991][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:08.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:08.993][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:08.995][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:05:08.996][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:08.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:08.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:09.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:09.001][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:09.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:09.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:09.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:09.006][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:09.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:09.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:09.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:09.012][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-12-07 16:05:09.013][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:09.014][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:09.016][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:09.022][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:09.023][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:09.024][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:09.025][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:09.027][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:09.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:09.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:09.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:09.032][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:09.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:09.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:09.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:09.037][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:09.038][private$selectFields]
biodb.TRACE[2024-12-07 16:05:09.040][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:05:09.041][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:05:09.042][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:09.043][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:09.045][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:09.046][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:09.047][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:09.048][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:09.050][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:09.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:09.052][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:09.053][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:09.055][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:09.056][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:09.057][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:09.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:09.060][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:09.061][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:05:09.062][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:09.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:09.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:09.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:09.067][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:09.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:09.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:09.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:09.073][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:09.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:09.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:09.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:09.078][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2024-12-07 16:05:09.079][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:05:09.081][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:05:09.083][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:09.084][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:09.085][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:09.091][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:09.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:09.094][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:09.095][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:09.098][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:05:09.103][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:05:09.104][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:05:09.106][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-12-07 16:05:09.524][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-12-07 16:05:09.938][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:05:09.941][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7b0416ab2d5cbf869f248000c039a8e8.content"
biodb.TRACE[2024-12-07 16:05:09.946][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7b0416ab2d5cbf869f248000c039a8e8.request"
biodb.DEBUG[2024-12-07 16:05:09.950][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:09.951][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:09.952][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:09.958][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:09.959][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:09.961][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:09.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:09.963][private$loadEntries] Creating entries from ids [1]: "31303".
biodb.DEBUG[2024-12-07 16:05:09.964][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:09.966][cch$loadFileContent] Trying to load 1 files from cache: [1]: "31303".
biodb.TRACE[2024-12-07 16:05:09.968][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:05:09.969][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:05:09.971][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:09.972][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:05:09.973][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:05:09.974][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:05:09.978][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:09.979][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:09.980][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:09.986][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:09.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:09.989][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:09.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:09.991][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=31303".
biodb.DEBUG[2024-12-07 16:05:09.995][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:05:09.996][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:05:09.998][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=31303".
biodb.TRACE[2024-12-07 16:05:10.437][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=31303).
biodb.DEBUG[2024-12-07 16:05:10.853][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:05:10.856][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/99089a071b7e4bcfb0ef9a12b49b39b2.content"
biodb.TRACE[2024-12-07 16:05:10.860][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/99089a071b7e4bcfb0ef9a12b49b39b2.request"
biodb.TRACE[2024-12-07 16:05:10.863][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/31303.xml"
biodb.DEBUG[2024-12-07 16:05:10.866][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:05:10.867][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:10.869][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:10.871][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:10.872][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:10.873][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:10.879][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:10.881][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:10.882][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:10.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:10.886][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:10.887][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:10.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:10.890][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:10.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:10.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:10.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:10.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:10.896][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:10.898][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:10.899][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:10.900][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:10.902][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:10.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:10.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:10.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:10.907][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:10.908][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:10.909][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:10.911][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:10.912][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:10.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:10.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:10.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:10.917][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:10.919][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:10.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:10.921][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:10.923][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:10.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:10.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:10.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:10.928][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:10.929][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:10.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:10.932][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:10.933][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:10.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:10.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:10.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:10.938][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:10.940][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:10.941][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:10.942][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:10.944][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:10.945][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:10.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:10.948][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:10.949][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:10.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:10.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:10.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:10.955][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:10.956][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:10.957][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:10.958][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:10.960][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:10.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:10.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:10.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:10.965][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:10.967][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:10.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:10.969][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:10.971][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:10.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:10.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:10.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:10.976][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:10.978][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:10.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:10.992][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:10.994][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:10.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:10.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:10.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:10.999][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:11.001][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:11.002][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:11.003][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:11.005][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:11.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:11.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:11.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:11.010][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:11.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:11.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:11.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:11.015][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:11.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:11.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:11.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:11.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:11.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:11.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:11.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:11.025][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:11.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:11.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:11.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:11.030][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:11.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:11.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:11.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:11.035][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:11.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:11.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:11.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:11.040][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:11.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:11.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:11.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:11.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:11.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:11.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:11.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:11.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:11.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:11.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:11.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:11.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:11.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:11.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:11.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:11.060][self$createEntryFromContent] Accession numbers: 31303.
biodb.TRACE[2024-12-07 16:05:11.062][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:11.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:11.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:11.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:11.067][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:11.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:11.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:11.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:11.072][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:11.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:11.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:11.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:11.077][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:11.078][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:11.079][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:11.085][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:11.086][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:11.087][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:11.088][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:11.090][private$loadEntries] Creating entries from ids [1]: "37118".
biodb.DEBUG[2024-12-07 16:05:11.091][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:11.093][cch$loadFileContent] Trying to load 1 files from cache: [1]: "37118".
biodb.TRACE[2024-12-07 16:05:11.094][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:05:11.096][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:05:11.097][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:11.098][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:05:11.100][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:05:11.101][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:05:11.104][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:11.105][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:11.106][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:11.113][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:11.114][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:11.115][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:11.116][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:11.118][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=37118".
biodb.DEBUG[2024-12-07 16:05:11.121][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:05:11.122][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:05:11.124][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=37118".
biodb.TRACE[2024-12-07 16:05:11.558][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=37118).
biodb.DEBUG[2024-12-07 16:05:11.977][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:05:11.980][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37e09c6197385dffaf0a241198ec6309.content"
biodb.TRACE[2024-12-07 16:05:11.984][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37e09c6197385dffaf0a241198ec6309.request"
biodb.TRACE[2024-12-07 16:05:11.988][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37118.xml"
biodb.DEBUG[2024-12-07 16:05:11.990][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:05:11.991][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:11.993][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:11.995][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:11.996][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:11.997][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:12.004][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:12.005][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:12.006][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:12.007][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:12.010][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:12.012][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:12.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:12.014][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:12.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:12.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:12.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:12.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:12.021][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:12.022][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:12.023][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:12.025][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:12.026][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:12.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:12.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:12.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:12.032][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:12.033][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:12.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:12.035][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:12.037][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:12.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:12.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:12.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:12.042][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:12.044][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:12.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:12.046][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:12.048][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:12.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:12.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:12.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:12.053][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:12.054][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:12.055][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:12.057][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:12.058][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:12.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:12.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:12.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:12.063][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:12.065][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:12.066][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:12.067][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:12.068][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:12.070][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:12.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:12.072][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:12.074][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:12.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:12.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:12.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:12.079][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:12.080][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:12.081][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:12.082][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:12.084][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:12.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:12.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:12.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:12.089][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:12.091][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:12.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:12.093][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:12.095][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:12.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:12.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:12.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:12.100][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:12.101][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:12.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:12.103][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:12.105][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:12.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:12.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:12.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:12.110][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:12.111][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:12.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:12.114][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:12.115][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:12.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:12.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:12.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:12.120][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:12.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:12.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:12.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:12.125][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:12.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:12.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:12.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:12.130][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:12.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:12.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:12.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:12.136][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:12.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:12.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:12.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:12.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:12.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:12.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:12.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:12.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:12.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:12.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:12.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:12.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:12.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:12.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:12.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:12.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:12.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:12.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:12.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:12.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:12.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:12.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:12.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:12.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:12.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:12.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:12.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:12.171][self$createEntryFromContent] Accession numbers: 37118.
biodb.TRACE[2024-12-07 16:05:12.172][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:12.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:12.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:12.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:12.178][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:12.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:12.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:12.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:12.183][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:12.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:12.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:12.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:12.188][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:12.189][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:12.190][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:12.197][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:12.198][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:12.199][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:12.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:12.202][private$loadEntries] Creating entries from ids [1]: "39424".
biodb.DEBUG[2024-12-07 16:05:12.203][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:12.205][cch$loadFileContent] Trying to load 1 files from cache: [1]: "39424".
biodb.TRACE[2024-12-07 16:05:12.207][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:05:12.208][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:05:12.210][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:12.211][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:05:12.212][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:05:12.213][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:05:12.217][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:12.218][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:12.219][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:12.225][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:12.226][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:12.227][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:12.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:12.230][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=39424".
biodb.DEBUG[2024-12-07 16:05:12.234][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:05:12.235][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:05:12.237][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=39424".
biodb.TRACE[2024-12-07 16:05:12.680][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=39424).
biodb.DEBUG[2024-12-07 16:05:13.103][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:05:13.106][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/da5bac251de02a0ce66c3d69c0d59bb8.content"
biodb.TRACE[2024-12-07 16:05:13.110][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/da5bac251de02a0ce66c3d69c0d59bb8.request"
biodb.TRACE[2024-12-07 16:05:13.113][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/39424.xml"
biodb.DEBUG[2024-12-07 16:05:13.115][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:05:13.117][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:13.118][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:13.120][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:13.121][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:13.122][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:13.141][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:13.142][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:13.143][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:13.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:13.147][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:13.148][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:13.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:13.151][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:13.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:13.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:13.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:13.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:13.157][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:13.159][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:13.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:13.161][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:13.162][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:13.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:13.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:13.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:13.168][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:13.169][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:13.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:13.171][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:13.173][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:13.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:13.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:13.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:13.178][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:13.179][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:13.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:13.182][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:13.183][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:13.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:13.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:13.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:13.188][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:13.189][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:13.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:13.192][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:13.193][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:13.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:13.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:13.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:13.198][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:13.200][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:13.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:13.202][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:13.204][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:13.205][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:13.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:13.207][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:13.209][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:13.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:13.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:13.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:13.214][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:13.215][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:13.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:13.218][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:13.219][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:13.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:13.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:13.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:13.224][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:13.226][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:13.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:13.228][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:13.230][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:13.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:13.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:13.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:13.235][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:13.236][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:13.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:13.239][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:13.240][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:13.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:13.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:13.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:13.245][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:13.247][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:13.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:13.249][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:13.251][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:13.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:13.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:13.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:13.256][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:13.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:13.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:13.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:13.261][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:13.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:13.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:13.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:13.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:13.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:13.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:13.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:13.271][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:13.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:13.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:13.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:13.276][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:13.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:13.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:13.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:13.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:13.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:13.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:13.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:13.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:13.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:13.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:13.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:13.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:13.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:13.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:13.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:13.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:13.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:13.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:13.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:13.302][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:13.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:13.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:13.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:13.307][self$createEntryFromContent] Accession numbers: 39424.
biodb.TRACE[2024-12-07 16:05:13.308][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:13.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:13.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:13.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:13.313][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:13.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:13.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:13.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:13.318][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:13.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:13.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:13.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:13.323][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:13.325][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:13.326][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:13.332][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:13.333][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:13.334][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:13.335][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:13.337][private$loadEntries] Creating entries from ids [1]: "81767".
biodb.DEBUG[2024-12-07 16:05:13.338][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:13.340][cch$loadFileContent] Trying to load 1 files from cache: [1]: "81767".
biodb.TRACE[2024-12-07 16:05:13.342][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:05:13.343][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:05:13.344][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:13.346][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:05:13.347][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:05:13.348][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:05:13.351][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:13.353][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:13.354][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:13.360][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:13.361][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:13.363][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:13.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:13.365][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=81767".
biodb.DEBUG[2024-12-07 16:05:13.369][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:05:13.370][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:05:13.372][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=81767".
biodb.TRACE[2024-12-07 16:05:13.823][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=81767).
biodb.DEBUG[2024-12-07 16:05:14.241][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:05:14.243][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6d9dc9192959d977e17745ebfa06bb73.content"
biodb.TRACE[2024-12-07 16:05:14.248][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6d9dc9192959d977e17745ebfa06bb73.request"
biodb.TRACE[2024-12-07 16:05:14.251][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/81767.xml"
biodb.DEBUG[2024-12-07 16:05:14.253][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:05:14.254][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:14.256][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:14.258][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:14.259][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:14.260][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:14.266][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:14.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:14.268][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:14.269][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:14.272][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:14.273][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:14.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.276][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.277][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:14.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:14.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.282][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:14.284][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:14.285][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.286][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.288][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:14.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:14.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.293][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:14.294][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:14.295][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.296][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.298][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:14.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:14.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.303][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:14.304][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:14.306][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.307][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.308][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:14.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:14.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.314][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:14.315][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:14.316][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.317][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.319][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:14.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:14.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.324][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:14.325][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:14.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.328][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.329][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:14.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:14.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.334][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:14.336][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:14.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.338][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.340][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:14.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:14.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.345][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:14.346][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:14.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.348][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.350][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:14.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:14.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.355][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:14.356][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:14.358][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.359][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.361][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:14.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:14.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.366][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:14.367][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:14.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.370][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.371][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:14.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:14.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.376][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:14.378][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:14.379][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.380][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.382][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:14.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:14.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.387][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.392][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.397][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:14.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:14.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.402][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:14.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:14.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:14.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:14.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:14.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:14.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:14.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:14.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:14.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:14.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:14.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:14.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:14.448][self$createEntryFromContent] Accession numbers: 81767.
biodb.TRACE[2024-12-07 16:05:14.450][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:14.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:14.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.455][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:14.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:14.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.460][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:14.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:14.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:14.465][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:14.466][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:14.467][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:14.473][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:14.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:14.475][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:14.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:14.478][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:14.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:14.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.483][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:14.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:14.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.488][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:14.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:14.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:14.493][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:05:14.495][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:14.496][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:14.497][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:14.503][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:14.504][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:14.506][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:14.507][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:14.508][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.513][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.518][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:14.519][private$selectFields]
biodb.TRACE[2024-12-07 16:05:14.520][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:05:14.522][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:05:14.523][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:14.524][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.525][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.527][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.528][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.529][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.530][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.533][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.534][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:14.535][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:14.536][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.538][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.540][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.541][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:05:14.543][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.548][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.553][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.558][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [31303].
biodb.DEBUG[2024-12-07 16:05:14.560][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:14.561][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:14.562][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:14.568][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:14.569][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:14.571][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:14.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:14.573][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.578][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.584][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:14.585][private$selectFields]
biodb.TRACE[2024-12-07 16:05:14.586][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:05:14.587][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:05:14.588][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:14.590][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.591][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.593][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.595][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.596][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.598][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.600][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:14.601][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:14.602][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.603][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.605][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.606][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.607][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:05:14.608][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.613][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.618][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.623][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [81767].
biodb.DEBUG[2024-12-07 16:05:14.625][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:14.626][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:14.627][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:14.633][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:14.635][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:14.636][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:14.637][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:14.638][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.643][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.648][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:14.649][private$selectFields]
biodb.TRACE[2024-12-07 16:05:14.650][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:05:14.652][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:05:14.653][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:14.654][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.655][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.658][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.659][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.660][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.663][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.664][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:14.665][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:14.666][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.668][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.669][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.670][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.671][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:05:14.672][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.677][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.682][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.688][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [131378].
biodb.DEBUG[2024-12-07 16:05:14.689][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:05:14.690][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:05:14.716][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:14.717][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:14.718][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:14.724][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:14.725][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:14.726][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:14.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:14.731][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:05:14.735][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:05:14.736][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-12-07 16:05:14.738][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:05:14.740][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-12-07 16:05:14.743][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:05:14.747][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:05:14.749][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-12-07 16:05:14.751][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:05:14.752][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-12-07 16:05:14.755][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:14.756][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:14.758][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:14.764][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:14.765][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:14.766][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:14.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:14.769][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:14.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:14.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.773][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:14.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:14.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.778][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:14.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:14.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:14.783][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:14.784][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:14.786][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:14.792][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:14.793][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:14.794][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:14.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:14.797][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:14.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:14.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.802][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:14.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:14.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.806][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:14.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:14.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:14.811][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:14.813][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:14.814][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:14.820][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:14.821][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:14.822][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:14.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:14.825][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:14.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:14.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.830][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:14.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:14.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.835][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:14.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:14.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:14.847][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:05:14.849][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:14.850][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:14.851][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:14.857][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:14.858][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:14.860][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:14.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:14.862][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.872][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:14.873][private$selectFields]
biodb.TRACE[2024-12-07 16:05:14.874][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:05:14.875][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:05:14.877][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:14.878][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.879][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.882][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.883][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.884][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.886][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.888][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:14.889][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:14.890][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.891][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.894][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.895][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:05:14.896][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.901][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.906][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.911][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-12-07 16:05:14.912][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:14.914][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:14.915][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:14.921][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:14.922][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:14.923][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:14.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:14.926][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.931][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.936][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:14.937][private$selectFields]
biodb.TRACE[2024-12-07 16:05:14.938][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:05:14.939][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:05:14.940][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:14.942][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.943][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.944][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.945][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.946][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.948][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.950][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.951][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:14.953][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:14.954][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.955][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.958][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.959][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:05:14.960][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.965][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.970][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.975][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-12-07 16:05:14.977][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:14.978][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:14.979][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:14.985][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:14.987][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:14.988][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:14.989][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:14.990][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:14.995][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:14.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:14.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:15.000][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:15.001][private$selectFields]
biodb.TRACE[2024-12-07 16:05:15.003][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:05:15.004][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:05:15.005][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:15.006][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.008][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.010][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:15.011][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.012][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.015][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:15.016][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:15.017][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:15.019][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.020][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.022][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:15.023][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:05:15.025][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:15.030][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:15.035][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:15.040][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-12-07 16:05:15.041][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:05:15.043][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:05:15.045][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:15.046][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:15.047][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:15.054][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:15.055][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:15.056][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:15.057][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:15.060][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:05:15.065][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:05:15.066][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2024-12-07 16:05:15.068][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:05:15.070][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2024-12-07 16:05:15.073][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:15.074][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:15.075][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:15.081][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:15.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:15.084][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:15.085][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:15.086][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:15.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:15.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:15.091][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:15.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:15.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:15.096][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:15.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:15.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:15.101][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:15.102][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:15.103][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:15.110][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:15.111][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:15.112][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:15.114][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:15.115][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:15.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:15.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:15.120][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:15.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:15.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:15.126][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:15.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:15.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:15.131][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:15.132][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:15.133][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:15.139][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:15.141][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:15.142][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:15.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:15.144][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:15.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:15.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:15.150][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:15.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:15.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:15.155][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:15.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:15.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:15.160][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:05:15.162][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:15.163][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:15.164][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:15.171][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:15.172][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:15.173][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:15.174][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:15.176][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:15.182][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:15.187][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:15.188][private$selectFields]
biodb.TRACE[2024-12-07 16:05:15.190][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:05:15.191][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:05:15.192][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:15.193][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.195][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.198][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:15.199][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.200][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.202][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.203][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:15.204][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:15.206][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:15.207][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.209][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.211][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:15.212][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:05:15.214][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:15.219][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:15.225][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:15.231][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-12-07 16:05:15.233][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:15.234][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:15.235][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:15.242][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:15.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:15.244][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:15.245][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:15.247][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:15.252][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:15.258][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:15.259][private$selectFields]
biodb.TRACE[2024-12-07 16:05:15.260][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:05:15.262][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:05:15.263][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:15.264][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.272][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.275][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:15.276][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.278][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.279][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.280][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:15.282][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:15.283][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:15.284][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.286][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.287][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.288][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:15.289][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:05:15.291][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:15.296][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:15.301][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:15.306][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2024-12-07 16:05:15.308][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:15.309][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:15.310][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:15.316][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:15.317][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:15.319][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:15.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:15.321][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:15.326][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:15.331][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:15.333][private$selectFields]
biodb.TRACE[2024-12-07 16:05:15.334][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:05:15.335][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:05:15.336][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:15.337][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.339][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.340][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.341][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:15.342][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.344][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.346][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:15.347][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:15.349][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:15.350][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.351][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.353][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.354][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:15.355][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:05:15.356][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:15.362][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:15.367][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:15.372][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2024-12-07 16:05:15.374][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:05:15.375][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:05:15.377][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:15.379][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:15.380][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:15.386][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:15.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:15.389][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:15.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:15.393][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:05:15.398][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:05:15.400][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2024-12-07 16:05:15.402][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:05:15.403][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2024-12-07 16:05:15.407][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:15.408][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:15.410][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:15.416][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:15.417][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:15.418][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:15.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:15.421][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:15.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:15.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:15.426][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:15.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:15.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:15.431][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:15.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:15.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:15.436][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:15.438][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:15.439][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:15.445][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:15.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:15.448][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:15.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:15.450][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:15.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:15.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:15.455][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:15.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:15.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:15.461][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:15.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:15.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:15.466][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:15.467][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:15.468][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:15.475][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:15.476][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:15.477][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:15.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:15.480][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:15.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:15.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:15.485][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:15.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:15.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:15.490][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:15.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:15.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:15.495][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:05:15.497][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:15.498][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:15.500][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:15.506][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:15.507][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:15.508][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:15.509][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:15.511][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:15.516][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:15.521][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:15.522][private$selectFields]
biodb.TRACE[2024-12-07 16:05:15.524][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:05:15.525][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:05:15.526][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:15.527][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.529][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.531][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:15.532][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.534][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.536][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:15.538][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:15.539][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:15.540][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.541][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.543][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.544][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:15.545][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:05:15.547][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:15.552][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:15.557][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:15.562][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2024-12-07 16:05:15.564][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:15.565][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:15.566][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:15.572][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:15.573][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:15.574][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:15.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:15.577][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:15.582][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:15.587][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:15.588][private$selectFields]
biodb.TRACE[2024-12-07 16:05:15.589][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:05:15.591][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:05:15.592][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:15.593][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.594][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.597][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:15.598][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.599][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.602][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:15.603][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:15.604][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:15.605][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.607][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.608][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.609][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:15.610][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:05:15.612][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:15.617][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:15.622][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:15.627][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2024-12-07 16:05:15.628][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:15.629][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:15.630][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:15.637][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:15.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:15.639][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:15.640][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:15.642][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:15.647][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:15.652][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:15.653][private$selectFields]
biodb.TRACE[2024-12-07 16:05:15.654][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:05:15.655][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:05:15.656][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:15.658][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.659][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.661][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:15.662][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.664][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.666][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:15.667][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:15.669][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:15.670][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.671][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.673][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.674][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:15.675][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:05:15.676][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:15.681][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:15.686][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:15.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:15.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:15.698][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2024-12-07 16:05:15.700][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:05:15.701][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:05:15.727][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:15.728][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:15.729][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:15.736][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:15.737][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:15.738][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:15.739][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:15.742][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:05:15.747][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:05:15.748][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:05:15.750][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-12-07 16:05:16.173][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-12-07 16:05:16.595][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:05:16.598][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26eec570aadd234892b573eb0777bd78.content"
biodb.TRACE[2024-12-07 16:05:16.603][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26eec570aadd234892b573eb0777bd78.request"
biodb.DEBUG[2024-12-07 16:05:16.608][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:16.609][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:16.611][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:16.617][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:16.618][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:16.620][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:16.621][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:16.622][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:16.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:16.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:16.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:16.627][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:16.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:16.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:16.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:16.633][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:16.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:16.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:16.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:16.638][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:16.639][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:16.640][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:16.646][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:16.647][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:16.648][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:16.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:16.651][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:16.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:16.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:16.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:16.656][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:16.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:16.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:16.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:16.661][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:16.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:16.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:16.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:16.666][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:16.667][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:16.668][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:16.675][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:16.676][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:16.677][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:16.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:16.680][private$loadEntries] Creating entries from ids [1]: "17813".
biodb.DEBUG[2024-12-07 16:05:16.681][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:16.683][cch$loadFileContent] Trying to load 1 files from cache: [1]: "17813".
biodb.TRACE[2024-12-07 16:05:16.685][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:05:16.686][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:05:16.687][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:16.689][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:05:16.690][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:05:16.691][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:05:16.695][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:16.696][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:16.697][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:16.703][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:16.705][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:16.706][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:16.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:16.708][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=17813".
biodb.DEBUG[2024-12-07 16:05:16.712][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:05:16.713][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:05:16.715][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=17813".
biodb.TRACE[2024-12-07 16:05:17.172][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=17813).
biodb.DEBUG[2024-12-07 16:05:17.628][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:05:17.631][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62f7e1534a05c51cc1431eff021df0bd.content"
biodb.TRACE[2024-12-07 16:05:17.635][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62f7e1534a05c51cc1431eff021df0bd.request"
biodb.TRACE[2024-12-07 16:05:17.639][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/17813.xml"
biodb.DEBUG[2024-12-07 16:05:17.641][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:05:17.642][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:17.644][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:17.646][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:17.647][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:17.648][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:17.654][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:17.656][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:17.657][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:17.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:17.661][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:17.662][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:17.663][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:17.664][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:17.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:17.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:17.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:17.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:17.671][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:17.672][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:17.673][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:17.675][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:17.676][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:17.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:17.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:17.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:17.681][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:17.682][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:17.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:17.685][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:17.687][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:17.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:17.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:17.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:17.692][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:17.693][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:17.694][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:17.695][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:17.697][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:17.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:17.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:17.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:17.702][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:17.703][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:17.705][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:17.706][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:17.707][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:17.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:17.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:17.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:17.712][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:17.714][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:17.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:17.716][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:17.718][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:17.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:17.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:17.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:17.723][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:17.724][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:17.725][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:17.726][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:17.728][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:17.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:17.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:17.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:17.733][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:17.734][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:17.736][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:17.737][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:17.738][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:17.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:17.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:17.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:17.743][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:17.745][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:17.746][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:17.747][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:17.749][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:17.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:17.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:17.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:17.754][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:17.755][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:17.757][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:17.758][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:17.759][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:17.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:17.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:17.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:17.764][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:17.766][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:17.767][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:17.768][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:17.770][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:17.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:17.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:17.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:17.775][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:17.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:17.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:17.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:17.780][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:17.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:17.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:17.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:17.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:17.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:17.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:17.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:17.790][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:17.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:17.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:17.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:17.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:17.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:17.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:17.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:17.800][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:17.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:17.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:17.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:17.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:17.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:17.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:17.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:17.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:17.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:17.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:17.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:17.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:17.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:17.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:17.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:17.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:17.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:17.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:17.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:17.825][self$createEntryFromContent] Accession numbers: 17813.
biodb.TRACE[2024-12-07 16:05:17.826][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:17.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:17.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:17.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:17.831][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:17.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:17.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:17.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:17.836][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:17.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:17.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:17.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:17.841][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:17.842][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:17.843][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:17.849][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:17.850][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:17.852][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:17.853][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:17.854][private$loadEntries] Creating entries from ids [1]: "30109".
biodb.DEBUG[2024-12-07 16:05:17.855][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:17.857][cch$loadFileContent] Trying to load 1 files from cache: [1]: "30109".
biodb.TRACE[2024-12-07 16:05:17.859][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:05:17.860][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:05:17.861][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:17.863][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:05:17.864][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:05:17.865][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:05:17.880][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:17.882][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:17.883][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:17.889][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:17.890][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:17.891][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:17.893][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:17.894][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30109".
biodb.DEBUG[2024-12-07 16:05:17.898][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:05:17.899][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:05:17.901][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30109".
biodb.TRACE[2024-12-07 16:05:18.360][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30109).
biodb.DEBUG[2024-12-07 16:05:18.778][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:05:18.780][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8ed09c4c418a18a426e08dad5ae6a3f9.content"
biodb.TRACE[2024-12-07 16:05:18.785][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8ed09c4c418a18a426e08dad5ae6a3f9.request"
biodb.TRACE[2024-12-07 16:05:18.788][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/30109.xml"
biodb.DEBUG[2024-12-07 16:05:18.790][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:05:18.792][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:18.793][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:18.795][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:18.796][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:18.798][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:18.804][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:18.805][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:18.807][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:18.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:18.811][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:18.812][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:18.813][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:18.814][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:18.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:18.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:18.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:18.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:18.821][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:18.822][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:18.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:18.825][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:18.826][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:18.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:18.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:18.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:18.831][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:18.833][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:18.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:18.835][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:18.837][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:18.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:18.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:18.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:18.842][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:18.843][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:18.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:18.845][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:18.847][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:18.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:18.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:18.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:18.852][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:18.853][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:18.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:18.856][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:18.857][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:18.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:18.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:18.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:18.862][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:18.864][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:18.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:18.866][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:18.868][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:18.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:18.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:18.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:18.873][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:18.874][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:18.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:18.877][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:18.878][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:18.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:18.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:18.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:18.884][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:18.885][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:18.886][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:18.888][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:18.889][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:18.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:18.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:18.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:18.894][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:18.896][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:18.897][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:18.898][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:18.900][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:18.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:18.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:18.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:18.905][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:18.907][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:18.908][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:18.909][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:18.911][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:18.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:18.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:18.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:18.916][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:18.918][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:18.919][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:18.920][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:18.922][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:18.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:18.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:18.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:18.927][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:18.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:18.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:18.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:18.932][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:18.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:18.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:18.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:18.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:18.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:18.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:18.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:18.943][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:18.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:18.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:18.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:18.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:18.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:18.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:18.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:18.953][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:18.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:18.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:18.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:18.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:18.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:18.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:18.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:18.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:18.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:18.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:18.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:18.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:18.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:18.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:18.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:18.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:18.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:18.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:18.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:18.979][self$createEntryFromContent] Accession numbers: 30109.
biodb.TRACE[2024-12-07 16:05:18.980][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:18.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:18.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:18.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:18.985][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:18.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:18.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:18.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:18.990][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:18.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:18.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:18.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:18.995][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:18.996][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:18.997][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:19.004][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:19.005][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:19.006][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:19.007][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:19.008][private$loadEntries] Creating entries from ids [1]: "33275".
biodb.DEBUG[2024-12-07 16:05:19.010][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:19.012][cch$loadFileContent] Trying to load 1 files from cache: [1]: "33275".
biodb.TRACE[2024-12-07 16:05:19.013][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:05:19.014][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:05:19.016][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:19.017][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:05:19.018][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:05:19.019][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:05:19.023][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:19.024][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:19.025][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:19.031][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:19.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:19.033][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:19.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:19.036][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33275".
biodb.DEBUG[2024-12-07 16:05:19.039][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:05:19.040][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:05:19.042][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33275".
biodb.TRACE[2024-12-07 16:05:19.495][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33275).
biodb.DEBUG[2024-12-07 16:05:19.916][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:05:19.919][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7b5440dd739854267ce8eafb6ea36b1.content"
biodb.TRACE[2024-12-07 16:05:19.923][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7b5440dd739854267ce8eafb6ea36b1.request"
biodb.TRACE[2024-12-07 16:05:19.927][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/33275.xml"
biodb.DEBUG[2024-12-07 16:05:19.929][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:05:19.930][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:19.932][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:19.934][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:19.935][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:19.936][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:19.942][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:19.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:19.944][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:19.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:19.948][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:19.949][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:19.951][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:19.952][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:19.953][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:19.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:19.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:19.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:19.958][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:19.960][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:19.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:19.962][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:19.964][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:19.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:19.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:19.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:19.969][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:19.970][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:19.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:19.972][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:19.974][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:19.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:19.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:19.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:19.979][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:19.981][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:19.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:19.983][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:19.985][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:19.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:19.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:19.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:19.990][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:19.991][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:19.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:19.994][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:19.995][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:19.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:19.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:19.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:20.000][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:20.002][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:20.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:20.004][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:20.006][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:20.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:20.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:20.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:20.011][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:20.012][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:20.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:20.015][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:20.016][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:20.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:20.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:20.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:20.021][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:20.023][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:20.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:20.025][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:20.027][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:20.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:20.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:20.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:20.032][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:20.033][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:20.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:20.035][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:20.037][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:20.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:20.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:20.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:20.054][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:20.056][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:20.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:20.058][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:20.060][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:20.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:20.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:20.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:20.065][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:20.066][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:20.067][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:20.069][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:20.070][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:20.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:20.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:20.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:20.075][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:20.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:20.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:20.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:20.080][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:20.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:20.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:20.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:20.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:20.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:20.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:20.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:20.090][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:20.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:20.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:20.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:20.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:20.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:20.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:20.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:20.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:20.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:20.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:20.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:20.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:20.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:20.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:20.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:20.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:20.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:20.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:20.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:20.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:20.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:20.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:20.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:20.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:20.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:20.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:20.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:20.124][self$createEntryFromContent] Accession numbers: 33275.
biodb.TRACE[2024-12-07 16:05:20.126][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:20.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:20.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:20.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:20.131][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:20.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:20.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:20.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:20.136][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:20.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:20.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:20.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:20.141][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:20.142][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:20.143][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:20.149][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:20.150][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:20.151][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:20.152][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:20.154][private$loadEntries] Creating entries from ids [1]: "33277".
biodb.DEBUG[2024-12-07 16:05:20.155][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:20.157][cch$loadFileContent] Trying to load 1 files from cache: [1]: "33277".
biodb.TRACE[2024-12-07 16:05:20.158][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:05:20.160][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:05:20.161][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:20.163][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:05:20.164][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:05:20.165][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:05:20.168][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:20.169][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:20.171][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:20.177][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:20.178][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:20.179][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:20.180][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:20.182][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33277".
biodb.DEBUG[2024-12-07 16:05:20.185][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:05:20.187][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:05:20.188][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33277".
biodb.TRACE[2024-12-07 16:05:20.646][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33277).
biodb.DEBUG[2024-12-07 16:05:21.064][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:05:21.067][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9e077bb25f478950bf1d29f1e643c2aa.content"
biodb.TRACE[2024-12-07 16:05:21.071][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9e077bb25f478950bf1d29f1e643c2aa.request"
biodb.TRACE[2024-12-07 16:05:21.074][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/33277.xml"
biodb.DEBUG[2024-12-07 16:05:21.076][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:05:21.078][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:21.079][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:21.081][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:21.083][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:21.084][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:21.090][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:21.091][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:21.092][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:21.094][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:21.096][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:21.098][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:21.099][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:21.100][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:21.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:21.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:21.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:21.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:21.107][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:21.108][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:21.110][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:21.111][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:21.112][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:21.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:21.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:21.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:21.118][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:21.119][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:21.120][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:21.121][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:21.123][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:21.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:21.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:21.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:21.128][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:21.130][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:21.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:21.132][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:21.134][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:21.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:21.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:21.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:21.139][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:21.140][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:21.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:21.143][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:21.144][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:21.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:21.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:21.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:21.149][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:21.151][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:21.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:21.153][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:21.155][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:21.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:21.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:21.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:21.160][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:21.161][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:21.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:21.164][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:21.165][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:21.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:21.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:21.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:21.170][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:21.172][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:21.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:21.174][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:21.176][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:21.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:21.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:21.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:21.181][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:21.182][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:21.183][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:21.184][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:21.186][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:21.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:21.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:21.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:21.191][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:21.193][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:21.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:21.195][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:21.197][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:21.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:21.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:21.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:21.202][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:21.203][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:21.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:21.205][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:21.207][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:21.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:21.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:21.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:21.212][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:21.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:21.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:21.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:21.217][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:21.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:21.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:21.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:21.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:21.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:21.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:21.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:21.227][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:21.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:21.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:21.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:21.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:21.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:21.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:21.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:21.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:21.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:21.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:21.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:21.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:21.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:21.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:21.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:21.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:21.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:21.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:21.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:21.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:21.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:21.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:21.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:21.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:21.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:21.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:21.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:21.263][self$createEntryFromContent] Accession numbers: 33277.
biodb.TRACE[2024-12-07 16:05:21.264][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:21.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:21.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:21.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:21.269][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:21.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:21.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:21.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:21.274][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:21.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:21.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:21.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:21.279][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:21.280][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:21.281][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:21.288][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:21.289][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:21.290][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:21.291][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:21.292][private$loadEntries] Creating entries from ids [1]: "52421".
biodb.DEBUG[2024-12-07 16:05:21.294][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:21.296][cch$loadFileContent] Trying to load 1 files from cache: [1]: "52421".
biodb.TRACE[2024-12-07 16:05:21.297][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:05:21.299][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:05:21.300][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:21.302][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:05:21.303][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:05:21.304][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:05:21.307][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:21.309][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:21.310][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:21.316][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:21.318][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:21.319][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:21.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:21.321][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=52421".
biodb.DEBUG[2024-12-07 16:05:21.325][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:05:21.326][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:05:21.328][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=52421".
biodb.TRACE[2024-12-07 16:05:21.782][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=52421).
biodb.DEBUG[2024-12-07 16:05:22.199][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:05:22.202][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66d999f05cd47f00d9f023cd227b9481.content"
biodb.TRACE[2024-12-07 16:05:22.218][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66d999f05cd47f00d9f023cd227b9481.request"
biodb.TRACE[2024-12-07 16:05:22.222][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/52421.xml"
biodb.DEBUG[2024-12-07 16:05:22.224][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:05:22.225][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:22.227][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:22.229][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:22.230][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:22.231][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:22.237][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:22.239][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:22.240][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:22.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:22.244][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:22.245][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:22.246][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:22.247][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:22.249][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:22.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:22.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:22.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:22.254][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:22.255][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:22.256][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:22.258][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:22.259][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:22.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:22.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:22.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:22.264][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:22.265][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:22.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:22.268][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:22.269][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:22.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:22.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:22.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:22.274][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:22.276][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:22.277][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:22.278][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:22.280][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:22.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:22.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:22.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:22.285][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:22.286][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:22.287][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:22.288][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:22.290][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:22.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:22.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:22.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:22.295][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:22.296][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:22.298][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:22.299][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:22.300][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:22.302][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:22.303][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:22.304][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:22.306][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:22.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:22.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:22.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:22.311][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:22.312][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:22.313][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:22.315][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:22.316][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:22.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:22.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:22.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:22.321][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:22.323][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:22.324][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:22.325][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:22.327][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:22.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:22.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:22.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:22.332][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:22.333][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:22.335][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:22.336][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:22.337][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:22.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:22.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:22.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:22.343][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:22.344][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:22.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:22.346][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:22.348][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:22.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:22.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:22.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:22.353][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:22.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:22.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:22.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:22.358][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:22.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:22.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:22.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:22.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:22.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:22.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:22.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:22.368][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:22.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:22.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:22.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:22.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:22.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:22.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:22.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:22.378][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:22.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:22.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:22.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:22.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:22.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:22.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:22.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:22.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:22.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:22.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:22.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:22.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:22.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:22.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:22.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:22.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:22.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:22.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:22.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:22.404][self$createEntryFromContent] Accession numbers: 52421.
biodb.TRACE[2024-12-07 16:05:22.405][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:22.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:22.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:22.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:22.410][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:22.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:22.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:22.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:22.415][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:22.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:22.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:22.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:22.420][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:22.421][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:22.422][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:22.428][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:22.430][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:22.431][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:22.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:22.433][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:22.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:22.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:22.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:22.438][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:22.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:22.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:22.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:22.443][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:22.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:22.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:22.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:22.449][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:05:22.451][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:22.452][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:22.453][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:22.459][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:22.460][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:22.462][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:22.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:22.464][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:22.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:22.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:22.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:22.469][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:22.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:22.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:22.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:22.474][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:22.475][private$selectFields]
biodb.TRACE[2024-12-07 16:05:22.477][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:05:22.478][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:05:22.479][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:22.480][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:22.482][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:22.483][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:22.484][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:22.485][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:22.487][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:22.488][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:22.489][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:22.491][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:22.492][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:22.493][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:22.494][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:22.496][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:22.497][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:22.498][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:05:22.499][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:22.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:22.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:22.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:22.504][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:22.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:22.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:22.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:22.509][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:22.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:22.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:22.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:22.515][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-12-07 16:05:22.516][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:22.517][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:22.518][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:22.525][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:22.526][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:22.527][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:22.528][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:22.530][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:22.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:22.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:22.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:22.535][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:22.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:22.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:22.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:22.540][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:22.541][private$selectFields]
biodb.TRACE[2024-12-07 16:05:22.542][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:05:22.543][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:05:22.544][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:22.546][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:22.547][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:22.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:22.549][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:22.551][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:22.552][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:22.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:22.554][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:22.556][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:22.557][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:22.558][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:22.559][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:22.560][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:22.562][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:22.563][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:05:22.564][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:22.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:22.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:22.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:22.569][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:22.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:22.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:22.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:22.574][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:22.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:22.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:22.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:22.580][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-12-07 16:05:22.581][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:22.582][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:22.583][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:22.589][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:22.591][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:22.592][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:22.593][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:22.594][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:22.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:22.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:22.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:22.599][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:22.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:22.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:22.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:22.604][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:22.605][private$selectFields]
biodb.TRACE[2024-12-07 16:05:22.606][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:05:22.608][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:05:22.609][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:22.610][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:22.611][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:22.613][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:22.614][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:22.615][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:22.616][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:22.617][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:22.619][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:22.620][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:22.621][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:22.622][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:22.624][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:22.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:22.633][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:22.634][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:05:22.635][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:22.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:22.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:22.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:22.640][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:22.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:22.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:22.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:22.645][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:22.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:22.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:22.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:22.651][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-12-07 16:05:22.652][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:05:22.653][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:05:22.656][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:22.657][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:22.658][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:22.664][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:22.665][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:22.666][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:22.667][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:22.671][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:05:22.675][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:05:22.676][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:05:22.679][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-12-07 16:05:23.126][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-12-07 16:05:23.767][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:05:23.769][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/20c224089a82bbffabd2e7dbc67cfae3.content"
biodb.TRACE[2024-12-07 16:05:23.774][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/20c224089a82bbffabd2e7dbc67cfae3.request"
biodb.DEBUG[2024-12-07 16:05:23.784][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:23.785][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:23.786][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:23.792][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:23.793][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:23.795][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:23.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:23.797][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:23.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:23.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:23.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:23.802][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:23.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:23.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:23.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:23.807][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:23.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:23.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:23.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:23.812][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:23.813][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:23.815][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:23.821][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:23.822][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:23.823][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:23.824][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:23.826][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:23.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:23.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:23.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:23.831][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:23.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:23.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:23.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:23.836][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:23.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:23.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:23.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:23.841][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:23.842][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:23.843][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:23.850][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:23.851][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:23.852][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:23.853][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:23.855][private$loadEntries] Creating entries from ids [1]: "65567".
biodb.DEBUG[2024-12-07 16:05:23.856][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:23.858][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65567".
biodb.TRACE[2024-12-07 16:05:23.860][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:05:23.861][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:05:23.862][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:23.864][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:05:23.865][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:05:23.866][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:05:23.869][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:23.870][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:23.872][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:23.878][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:23.879][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:23.880][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:23.882][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:23.883][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65567".
biodb.DEBUG[2024-12-07 16:05:23.887][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:05:23.888][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:05:23.890][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65567".
biodb.TRACE[2024-12-07 16:05:24.339][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65567).
biodb.DEBUG[2024-12-07 16:05:24.854][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:05:24.857][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7f0d7a30f02eb1e897d8c17a3958aa76.content"
biodb.TRACE[2024-12-07 16:05:24.861][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7f0d7a30f02eb1e897d8c17a3958aa76.request"
biodb.TRACE[2024-12-07 16:05:24.865][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65567.xml"
biodb.DEBUG[2024-12-07 16:05:24.867][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:05:24.868][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:24.869][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:24.871][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:24.873][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:24.874][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:24.880][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:24.881][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:24.882][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:24.884][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:24.887][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:24.888][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:24.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.890][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.892][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:24.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:24.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.897][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:24.898][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:24.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.901][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.902][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:24.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:24.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.908][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:24.909][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:24.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.911][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.913][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:24.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:24.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.918][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:24.919][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:24.921][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.922][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.923][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:24.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:24.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.929][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:24.930][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:24.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.932][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.934][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:24.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:24.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.939][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:24.940][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:24.942][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.943][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.944][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:24.946][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:24.947][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.948][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.950][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:24.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:24.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.955][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:24.956][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:24.958][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.959][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.960][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:24.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:24.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.966][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:24.967][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:24.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.969][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.971][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:24.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:24.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.976][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:24.978][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:24.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.980][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.982][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:24.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:24.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.987][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:24.988][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:24.989][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.990][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.992][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:24.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:24.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.997][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:24.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:25.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.002][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:25.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:25.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.008][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:25.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:25.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.013][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:25.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:25.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.018][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:25.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:25.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:25.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:25.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:25.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:25.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:25.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:25.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:25.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:25.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:25.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:25.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:25.049][self$createEntryFromContent] Accession numbers: 65567.
biodb.TRACE[2024-12-07 16:05:25.050][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:25.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:25.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.055][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:25.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:25.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.060][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:25.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:25.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:25.065][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:25.067][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:25.068][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:25.074][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:25.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:25.076][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:25.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:25.079][private$loadEntries] Creating entries from ids [1]: "65576".
biodb.DEBUG[2024-12-07 16:05:25.080][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:25.082][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65576".
biodb.TRACE[2024-12-07 16:05:25.083][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:05:25.085][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:05:25.086][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:25.087][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:05:25.089][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:05:25.090][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:05:25.105][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:25.107][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:25.108][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:25.115][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:25.116][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:25.117][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:25.118][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:25.120][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65576".
biodb.DEBUG[2024-12-07 16:05:25.123][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:05:25.125][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:05:25.126][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65576".
biodb.TRACE[2024-12-07 16:05:25.572][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65576).
biodb.DEBUG[2024-12-07 16:05:25.987][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:05:25.990][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/df387492c1d7c1e81f35830307d5d903.content"
biodb.TRACE[2024-12-07 16:05:25.994][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/df387492c1d7c1e81f35830307d5d903.request"
biodb.TRACE[2024-12-07 16:05:25.997][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65576.xml"
biodb.DEBUG[2024-12-07 16:05:25.999][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:05:26.001][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:26.002][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:26.004][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:26.005][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:26.006][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:26.013][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:26.014][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:26.015][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:26.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:26.019][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:26.020][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:26.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.023][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:26.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:26.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.029][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:26.031][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:26.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.033][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.035][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:26.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:26.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.040][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:26.041][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:26.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.043][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.045][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:26.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:26.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.050][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:26.051][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:26.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.054][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.055][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:26.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:26.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.061][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:26.062][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:26.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.064][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.066][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:26.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:26.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.071][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:26.072][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:26.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.075][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.076][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:26.078][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:26.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.080][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.082][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:26.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:26.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.087][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:26.088][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:26.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.091][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.092][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:26.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:26.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.097][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:26.099][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:26.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.101][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.103][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:26.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:26.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.108][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:26.109][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:26.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.112][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.113][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:26.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:26.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.119][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:26.120][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:26.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.123][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.124][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:26.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:26.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.129][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:26.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:26.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:26.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:26.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:26.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:26.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.145][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:26.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:26.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:26.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:26.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.155][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:26.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:26.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:26.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:26.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:26.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:26.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:26.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:26.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:26.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:26.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:26.180][self$createEntryFromContent] Accession numbers: 65576.
biodb.TRACE[2024-12-07 16:05:26.182][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:26.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:26.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.187][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:26.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:26.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.192][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:26.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:26.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:26.197][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:26.198][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:26.199][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:26.205][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:26.207][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:26.208][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:26.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:26.210][private$loadEntries] Creating entries from ids [1]: "66352".
biodb.DEBUG[2024-12-07 16:05:26.211][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:26.213][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66352".
biodb.TRACE[2024-12-07 16:05:26.215][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:05:26.216][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:05:26.218][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:26.219][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:05:26.220][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:05:26.222][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:05:26.225][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:26.226][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:26.227][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:26.233][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:26.234][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:26.236][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:26.237][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:26.238][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66352".
biodb.DEBUG[2024-12-07 16:05:26.242][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:05:26.243][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:05:26.245][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66352".
biodb.TRACE[2024-12-07 16:05:26.687][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66352).
biodb.DEBUG[2024-12-07 16:05:27.105][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:05:27.107][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/45b0333aa11c1e7eb4af7d2d82f453d6.content"
biodb.TRACE[2024-12-07 16:05:27.112][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/45b0333aa11c1e7eb4af7d2d82f453d6.request"
biodb.TRACE[2024-12-07 16:05:27.116][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66352.xml"
biodb.DEBUG[2024-12-07 16:05:27.118][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:05:27.120][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:27.121][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:27.123][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:27.124][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:27.126][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:27.132][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:27.134][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:27.135][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:27.136][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:27.139][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:27.140][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:27.142][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:27.143][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:27.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:27.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:27.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:27.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:27.150][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:27.151][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:27.153][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:27.154][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:27.156][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:27.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:27.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:27.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:27.161][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:27.162][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:27.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:27.165][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:27.166][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:27.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:27.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:27.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:27.171][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:27.173][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:27.174][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:27.175][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:27.177][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:27.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:27.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:27.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:27.182][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:27.184][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:27.185][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:27.186][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:27.188][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:27.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:27.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:27.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:27.193][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:27.194][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:27.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:27.197][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:27.198][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:27.200][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:27.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:27.202][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:27.204][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:27.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:27.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:27.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:27.209][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:27.210][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:27.211][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:27.213][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:27.214][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:27.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:27.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:27.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:27.220][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:27.221][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:27.222][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:27.223][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:27.225][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:27.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:27.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:27.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:27.230][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:27.232][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:27.233][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:27.234][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:27.236][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:27.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:27.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:27.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:27.254][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:27.256][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:27.257][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:27.258][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:27.260][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:27.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:27.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:27.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:27.265][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:27.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:27.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:27.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:27.270][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:27.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:27.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:27.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:27.276][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:27.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:27.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:27.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:27.281][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:27.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:27.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:27.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:27.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:27.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:27.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:27.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:27.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:27.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:27.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:27.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:27.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:27.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:27.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:27.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:27.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:27.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:27.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:27.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:27.307][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:27.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:27.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:27.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:27.312][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:27.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:27.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:27.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:27.317][self$createEntryFromContent] Accession numbers: 66352.
biodb.TRACE[2024-12-07 16:05:27.318][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:27.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:27.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:27.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:27.323][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:27.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:27.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:27.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:27.328][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:27.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:27.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:27.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:27.333][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:27.335][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:27.336][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:27.342][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:27.343][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:27.345][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:27.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:27.347][private$loadEntries] Creating entries from ids [1]: "67567".
biodb.DEBUG[2024-12-07 16:05:27.348][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:27.350][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67567".
biodb.TRACE[2024-12-07 16:05:27.352][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:05:27.353][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:05:27.355][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:27.356][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:05:27.357][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:05:27.359][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:05:27.362][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:27.363][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:27.364][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:27.371][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:27.372][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:27.373][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:27.375][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:27.376][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67567".
biodb.DEBUG[2024-12-07 16:05:27.380][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:05:27.381][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:05:27.383][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67567".
biodb.TRACE[2024-12-07 16:05:27.821][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67567).
biodb.DEBUG[2024-12-07 16:05:28.240][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:05:28.243][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef82f494f4fdd41c2bb93aa0869ad73e.content"
biodb.TRACE[2024-12-07 16:05:28.247][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef82f494f4fdd41c2bb93aa0869ad73e.request"
biodb.TRACE[2024-12-07 16:05:28.251][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67567.xml"
biodb.DEBUG[2024-12-07 16:05:28.253][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:05:28.254][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:28.255][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:28.257][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:28.259][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:28.260][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:28.266][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:28.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:28.268][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:28.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:28.272][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:28.274][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:28.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:28.276][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:28.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:28.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:28.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:28.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:28.283][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:28.284][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:28.285][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:28.287][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:28.288][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:28.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:28.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:28.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:28.293][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:28.295][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:28.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:28.297][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:28.299][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:28.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:28.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:28.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:28.304][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:28.305][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:28.306][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:28.308][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:28.309][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:28.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:28.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:28.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:28.314][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:28.316][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:28.317][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:28.318][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:28.320][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:28.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:28.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:28.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:28.325][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:28.326][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:28.327][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:28.329][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:28.330][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:28.331][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:28.333][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:28.334][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:28.335][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:28.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:28.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:28.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:28.341][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:28.342][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:28.343][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:28.344][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:28.346][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:28.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:28.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:28.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:28.351][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:28.353][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:28.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:28.355][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:28.357][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:28.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:28.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:28.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:28.362][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:28.363][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:28.365][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:28.366][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:28.367][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:28.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:28.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:28.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:28.373][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:28.374][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:28.375][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:28.376][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:28.378][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:28.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:28.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:28.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:28.383][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:28.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:28.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:28.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:28.388][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:28.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:28.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:28.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:28.393][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:28.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:28.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:28.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:28.398][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:28.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:28.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:28.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:28.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:28.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:28.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:28.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:28.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:28.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:28.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:28.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:28.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:28.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:28.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:28.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:28.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:28.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:28.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:28.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:28.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:28.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:28.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:28.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:28.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:28.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:28.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:28.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:28.434][self$createEntryFromContent] Accession numbers: 67567.
biodb.TRACE[2024-12-07 16:05:28.435][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:28.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:28.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:28.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:28.440][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:28.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:28.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:28.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:28.446][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:28.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:28.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:28.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:28.451][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:28.452][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:28.453][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:28.459][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:28.460][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:28.461][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:28.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:28.464][private$loadEntries] Creating entries from ids [1]: "67693".
biodb.DEBUG[2024-12-07 16:05:28.465][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:28.467][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67693".
biodb.TRACE[2024-12-07 16:05:28.469][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:05:28.470][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:05:28.472][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:28.473][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:05:28.474][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:05:28.476][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:05:28.479][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:28.480][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:28.481][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:28.488][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:28.489][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:28.490][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:28.491][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:28.493][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67693".
biodb.DEBUG[2024-12-07 16:05:28.496][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:05:28.498][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:05:28.499][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67693".
biodb.TRACE[2024-12-07 16:05:28.940][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67693).
biodb.DEBUG[2024-12-07 16:05:29.354][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:05:29.356][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/007181120197262f6a39eff57d7aa092.content"
biodb.TRACE[2024-12-07 16:05:29.361][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/007181120197262f6a39eff57d7aa092.request"
biodb.TRACE[2024-12-07 16:05:29.364][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67693.xml"
biodb.DEBUG[2024-12-07 16:05:29.366][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:05:29.367][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:29.369][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:29.371][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:29.384][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:29.385][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:29.392][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:29.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:29.394][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:29.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:29.398][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:29.400][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:29.401][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:29.402][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:29.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:29.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:29.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:29.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:29.409][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:29.410][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:29.411][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:29.413][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:29.414][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:29.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:29.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:29.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:29.419][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:29.421][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:29.422][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:29.423][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:29.425][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:29.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:29.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:29.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:29.430][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:29.431][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:29.433][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:29.434][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:29.435][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:29.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:29.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:29.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:29.440][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:29.442][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:29.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:29.444][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:29.446][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:29.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:29.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:29.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:29.451][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:29.452][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:29.453][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:29.454][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:29.456][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:29.457][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:29.459][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:29.460][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:29.461][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:29.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:29.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:29.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:29.466][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:29.468][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:29.469][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:29.470][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:29.472][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:29.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:29.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:29.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:29.477][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:29.478][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:29.480][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:29.481][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:29.483][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:29.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:29.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:29.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:29.488][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:29.489][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:29.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:29.492][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:29.493][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:29.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:29.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:29.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:29.498][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:29.500][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:29.501][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:29.502][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:29.504][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:29.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:29.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:29.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:29.509][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:29.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:29.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:29.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:29.514][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:29.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:29.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:29.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:29.519][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:29.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:29.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:29.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:29.524][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:29.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:29.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:29.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:29.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:29.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:29.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:29.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:29.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:29.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:29.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:29.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:29.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:29.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:29.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:29.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:29.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:29.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:29.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:29.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:29.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:29.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:29.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:29.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:29.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:29.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:29.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:29.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:29.560][self$createEntryFromContent] Accession numbers: 67693.
biodb.TRACE[2024-12-07 16:05:29.561][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:29.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:29.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:29.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:29.567][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:29.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:29.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:29.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:29.572][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:29.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:29.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:29.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:29.577][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:29.578][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:29.579][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:29.585][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:29.587][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:29.588][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:29.589][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:29.590][private$loadEntries] Creating entries from ids [1]: "67700".
biodb.DEBUG[2024-12-07 16:05:29.592][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:29.594][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67700".
biodb.TRACE[2024-12-07 16:05:29.596][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:05:29.597][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:05:29.598][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:29.600][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:05:29.601][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:05:29.602][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:05:29.606][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:29.607][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:29.608][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:29.615][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:29.616][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:29.617][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:29.618][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:29.620][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67700".
biodb.DEBUG[2024-12-07 16:05:29.624][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:05:29.625][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:05:29.627][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67700".
biodb.TRACE[2024-12-07 16:05:30.061][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67700).
biodb.DEBUG[2024-12-07 16:05:30.477][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:05:30.479][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e41afa9432b74fa2b22a0c53e84c091a.content"
biodb.TRACE[2024-12-07 16:05:30.484][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e41afa9432b74fa2b22a0c53e84c091a.request"
biodb.TRACE[2024-12-07 16:05:30.488][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67700.xml"
biodb.DEBUG[2024-12-07 16:05:30.490][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:05:30.492][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:30.493][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:30.495][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:30.497][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:30.498][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:30.504][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:30.505][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:30.507][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:30.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:30.511][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:30.512][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:30.513][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:30.514][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:30.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:30.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:30.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:30.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:30.521][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:30.522][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:30.524][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:30.525][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:30.527][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:30.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:30.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:30.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:30.532][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:30.533][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:30.534][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:30.535][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:30.537][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:30.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:30.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:30.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:30.542][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:30.543][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:30.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:30.546][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:30.547][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:30.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:30.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:30.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:30.552][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:30.553][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:30.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:30.556][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:30.557][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:30.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:30.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:30.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:30.562][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:30.564][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:30.565][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:30.566][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:30.568][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:30.569][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:30.570][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:30.571][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:30.573][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:30.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:30.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:30.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:30.578][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:30.579][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:30.580][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:30.581][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:30.583][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:30.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:30.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:30.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:30.588][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:30.590][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:30.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:30.592][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:30.594][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:30.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:30.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:30.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:30.599][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:30.600][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:30.601][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:30.603][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:30.604][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:30.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:30.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:30.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:30.609][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:30.610][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:30.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:30.613][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:30.614][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:30.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:30.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:30.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:30.619][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:30.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:30.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:30.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:30.624][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:30.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:30.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:30.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:30.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:30.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:30.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:30.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:30.634][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:30.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:30.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:30.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:30.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:30.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:30.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:30.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:30.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:30.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:30.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:30.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:30.659][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:30.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:30.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:30.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:30.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:30.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:30.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:30.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:30.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:30.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:30.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:30.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:30.674][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:30.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:30.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:30.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:30.679][self$createEntryFromContent] Accession numbers: 67700.
biodb.TRACE[2024-12-07 16:05:30.681][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:30.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:30.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:30.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:30.685][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:30.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:30.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:30.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:30.690][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:30.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:30.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:30.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:30.695][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:30.696][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:30.697][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:30.704][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:30.705][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:30.706][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:30.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:30.709][private$loadEntries] Creating entries from ids [1]: "67701".
biodb.DEBUG[2024-12-07 16:05:30.710][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:30.712][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67701".
biodb.TRACE[2024-12-07 16:05:30.713][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:05:30.715][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:05:30.716][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:30.718][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:05:30.719][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:05:30.720][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:05:30.723][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:30.724][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:30.726][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:30.732][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:30.733][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:30.734][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:30.735][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:30.737][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67701".
biodb.DEBUG[2024-12-07 16:05:30.741][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:05:30.742][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:05:30.744][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67701".
biodb.TRACE[2024-12-07 16:05:31.182][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67701).
biodb.DEBUG[2024-12-07 16:05:31.602][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:05:31.604][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ca9443fe11bfb8fe207e2797d18dbba3.content"
biodb.TRACE[2024-12-07 16:05:31.609][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ca9443fe11bfb8fe207e2797d18dbba3.request"
biodb.TRACE[2024-12-07 16:05:31.612][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67701.xml"
biodb.DEBUG[2024-12-07 16:05:31.614][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:05:31.615][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:31.616][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:31.618][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:31.619][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:31.621][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:31.627][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:31.628][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:31.629][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:31.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:31.633][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:31.634][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:31.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.636][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:31.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:31.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:31.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:31.643][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:31.644][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:31.645][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.647][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:31.648][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:31.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:31.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:31.653][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:31.654][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:31.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.657][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:31.658][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:31.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:31.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:31.663][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:31.665][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:31.666][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.667][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:31.668][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:31.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:31.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:31.674][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:31.675][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:31.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.677][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:31.679][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:31.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:31.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:31.684][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:31.685][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:31.686][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.687][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:31.689][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:31.690][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:31.691][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.692][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:31.694][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:31.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:31.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:31.699][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:31.700][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:31.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.703][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:31.704][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:31.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:31.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:31.709][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:31.710][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:31.712][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.713][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:31.714][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:31.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:31.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:31.719][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:31.721][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:31.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.723][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:31.725][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:31.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:31.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:31.730][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:31.731][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:31.732][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.733][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:31.735][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:31.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:31.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:31.740][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:31.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:31.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:31.745][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:31.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:31.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:31.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:31.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:31.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:31.755][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:31.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:31.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:31.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:31.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:31.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:31.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:31.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:31.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:31.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:31.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:31.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:31.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:31.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:31.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:31.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:31.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:31.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:31.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:31.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:31.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:31.789][self$createEntryFromContent] Accession numbers: 67701.
biodb.TRACE[2024-12-07 16:05:31.791][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:31.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:31.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:31.796][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:31.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:31.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:31.800][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:31.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:31.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:31.805][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:31.806][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:31.807][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:31.814][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:31.815][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:31.816][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:31.817][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:31.818][private$loadEntries] Creating entries from ids [1]: "67705".
biodb.DEBUG[2024-12-07 16:05:31.820][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:31.822][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67705".
biodb.TRACE[2024-12-07 16:05:31.823][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:05:31.824][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:05:31.826][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:31.827][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:05:31.828][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:05:31.829][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:05:31.833][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:31.834][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:31.835][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:31.841][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:31.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:31.843][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:31.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:31.846][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67705".
biodb.DEBUG[2024-12-07 16:05:31.849][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:05:31.851][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:05:31.852][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67705".
biodb.TRACE[2024-12-07 16:05:32.296][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67705).
biodb.DEBUG[2024-12-07 16:05:32.714][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:05:32.717][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/19583a5be2f48ffe4ea86ed642cbc7df.content"
biodb.TRACE[2024-12-07 16:05:32.721][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/19583a5be2f48ffe4ea86ed642cbc7df.request"
biodb.TRACE[2024-12-07 16:05:32.724][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67705.xml"
biodb.DEBUG[2024-12-07 16:05:32.726][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:05:32.728][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:32.729][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:32.731][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:32.732][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:32.734][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:32.740][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:32.741][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:32.742][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:32.743][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:32.746][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:32.748][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:32.749][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.750][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:32.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:32.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.757][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:32.758][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:32.759][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.760][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.762][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:32.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:32.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.767][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:32.769][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:32.770][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.771][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.785][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:32.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:32.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.791][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:32.792][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:32.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.794][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.796][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:32.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:32.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.801][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:32.802][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:32.803][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.805][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.806][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:32.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:32.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.811][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:32.813][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:32.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.815][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.816][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:32.818][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:32.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.820][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.822][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:32.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:32.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.827][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:32.828][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:32.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.830][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.832][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:32.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:32.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.837][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:32.838][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:32.839][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.841][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.842][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:32.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:32.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.847][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:32.849][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:32.850][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.851][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.852][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:32.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:32.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.858][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:32.859][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:32.860][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.861][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.863][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:32.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:32.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.868][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:32.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:32.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.873][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:32.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:32.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:32.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:32.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.883][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:32.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:32.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:32.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:32.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:32.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:32.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:32.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:32.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:32.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:32.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.909][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:32.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:32.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:32.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:32.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:32.919][self$createEntryFromContent] Accession numbers: 67705.
biodb.TRACE[2024-12-07 16:05:32.921][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:32.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:32.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.926][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:32.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:32.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.931][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:32.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:32.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:32.936][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:32.937][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:32.938][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:32.945][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:32.946][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:32.947][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:32.948][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:32.950][private$loadEntries] Creating entries from ids [1]: "75265".
biodb.DEBUG[2024-12-07 16:05:32.951][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:32.953][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75265".
biodb.TRACE[2024-12-07 16:05:32.955][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:05:32.956][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:05:32.957][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:32.959][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:05:32.960][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:05:32.961][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:05:32.964][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:32.966][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:32.967][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:32.973][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:32.974][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:32.976][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:32.977][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:32.978][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75265".
biodb.DEBUG[2024-12-07 16:05:32.982][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:05:32.983][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:05:32.985][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75265".
biodb.TRACE[2024-12-07 16:05:33.426][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75265).
biodb.DEBUG[2024-12-07 16:05:33.849][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:05:33.853][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d89a3a12f8b9f5e8203e72f55b0016ed.content"
biodb.TRACE[2024-12-07 16:05:33.858][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d89a3a12f8b9f5e8203e72f55b0016ed.request"
biodb.TRACE[2024-12-07 16:05:33.861][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75265.xml"
biodb.DEBUG[2024-12-07 16:05:33.864][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:05:33.865][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:33.867][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:33.869][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:33.870][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:33.871][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:33.881][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:33.883][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:33.885][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:33.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:33.889][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:33.890][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:33.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.893][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:33.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:33.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.902][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:33.903][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:33.904][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.905][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.907][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:33.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:33.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.912][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:33.914][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:33.915][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.916][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.918][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:33.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:33.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.923][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:33.924][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:33.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.927][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.928][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:33.930][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:33.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.932][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.934][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:33.935][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:33.936][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.937][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.939][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:33.940][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:33.942][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.943][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.944][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:33.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:33.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.949][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:33.951][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:33.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.953][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.955][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:33.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:33.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.960][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:33.961][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:33.962][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.964][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.965][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:33.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:33.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.971][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:33.972][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:33.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.974][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.976][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:33.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:33.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.981][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:33.982][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:33.984][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.985][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.986][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:33.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:33.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.991][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:33.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:33.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.996][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:33.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:33.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:34.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:34.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.007][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:34.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:34.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.012][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:34.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:34.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:34.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:34.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:34.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:34.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:34.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:34.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:34.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:34.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.037][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:34.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:34.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:34.042][self$createEntryFromContent] Accession numbers: 75265.
biodb.TRACE[2024-12-07 16:05:34.043][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:34.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:34.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.048][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:34.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:34.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.053][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:34.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:34.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:34.058][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:34.059][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:34.060][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:34.076][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:34.077][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:34.078][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:34.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:34.081][private$loadEntries] Creating entries from ids [1]: "77370".
biodb.DEBUG[2024-12-07 16:05:34.082][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:34.084][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77370".
biodb.TRACE[2024-12-07 16:05:34.086][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:05:34.087][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:05:34.089][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:34.090][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:05:34.091][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:05:34.092][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:05:34.095][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:34.097][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:34.098][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:34.104][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:34.105][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:34.106][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:34.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:34.109][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77370".
biodb.DEBUG[2024-12-07 16:05:34.112][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:05:34.113][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:05:34.115][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77370".
biodb.TRACE[2024-12-07 16:05:34.756][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77370).
biodb.DEBUG[2024-12-07 16:05:35.173][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:05:35.176][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c00fcc12163fc12434466e6319d4b9a8.content"
biodb.TRACE[2024-12-07 16:05:35.180][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c00fcc12163fc12434466e6319d4b9a8.request"
biodb.TRACE[2024-12-07 16:05:35.183][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77370.xml"
biodb.DEBUG[2024-12-07 16:05:35.185][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:05:35.187][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:35.188][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:35.190][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:35.191][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:35.193][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:35.199][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:35.200][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:35.201][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:35.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:35.205][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:35.206][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:35.208][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.210][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.212][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:35.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:35.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.220][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:35.223][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:35.224][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.225][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.227][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:35.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:35.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.232][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:35.234][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:35.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.236][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.238][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:35.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:35.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.243][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:35.245][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:35.246][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.247][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.249][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:35.250][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:35.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.252][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.254][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:35.255][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:35.256][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.257][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.259][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:35.260][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.263][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.264][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:35.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.269][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:35.271][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:35.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.273][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.274][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:35.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:35.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.279][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:35.281][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:35.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.283][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.285][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:35.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:35.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.290][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:35.291][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:35.292][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.294][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.295][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:35.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:35.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.300][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:35.302][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:35.303][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.304][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.305][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:35.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:35.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.311][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:35.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:35.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.316][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:35.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:35.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:35.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:35.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.325][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:35.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:35.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:35.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:35.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:35.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:35.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:35.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:35.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:35.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:35.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:35.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:35.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:35.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:35.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:35.360][self$createEntryFromContent] Accession numbers: 77370.
biodb.TRACE[2024-12-07 16:05:35.361][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:35.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:35.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.366][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:35.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:35.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.371][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:35.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:35.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:35.376][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:35.377][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:35.378][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:35.385][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:35.386][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:35.387][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:35.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:35.389][private$loadEntries] Creating entries from ids [1]: "79074".
biodb.DEBUG[2024-12-07 16:05:35.391][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:35.393][cch$loadFileContent] Trying to load 1 files from cache: [1]: "79074".
biodb.TRACE[2024-12-07 16:05:35.394][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:05:35.395][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:05:35.397][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:35.398][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:05:35.399][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:05:35.400][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:05:35.404][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:35.405][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:35.406][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:35.412][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:35.413][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:35.414][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:35.415][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:35.417][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79074".
biodb.DEBUG[2024-12-07 16:05:35.420][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:05:35.422][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:05:35.423][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79074".
biodb.TRACE[2024-12-07 16:05:35.862][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79074).
biodb.DEBUG[2024-12-07 16:05:36.279][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:05:36.282][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9d103521a9057f87b1d7f6dac467847d.content"
biodb.TRACE[2024-12-07 16:05:36.287][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9d103521a9057f87b1d7f6dac467847d.request"
biodb.TRACE[2024-12-07 16:05:36.290][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79074.xml"
biodb.DEBUG[2024-12-07 16:05:36.292][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:05:36.294][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:36.295][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:36.297][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:36.298][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:36.299][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:36.306][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:36.307][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:36.308][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:36.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:36.312][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:36.314][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:36.315][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.316][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:36.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:36.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.323][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:36.324][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:36.325][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.327][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.328][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:36.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:36.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.333][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:36.335][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:36.336][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.337][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.339][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:36.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:36.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.344][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:36.345][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:36.346][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.348][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.349][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:36.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:36.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.354][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:36.356][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:36.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.358][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.360][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:36.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:36.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.365][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:36.366][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:36.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.369][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.370][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:36.372][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.373][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.374][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.376][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:36.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.381][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.382][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.383][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.384][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.386][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.391][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:36.392][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:36.393][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.395][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.409][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:36.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:36.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.414][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:36.415][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:36.417][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.418][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.419][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:36.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:36.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.425][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:36.426][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:36.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.428][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.430][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:36.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:36.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.435][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:36.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:36.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.440][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:36.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:36.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:36.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:36.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.450][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:36.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:36.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:36.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:36.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:36.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:36.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.465][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:36.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:36.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:36.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:36.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:36.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:36.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:36.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:36.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:36.485][self$createEntryFromContent] Accession numbers: 79074.
biodb.TRACE[2024-12-07 16:05:36.486][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.491][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.497][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:36.502][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:36.503][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:36.504][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:36.510][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:36.511][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:36.512][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:36.514][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:36.515][private$loadEntries] Creating entries from ids [1]: "79302".
biodb.DEBUG[2024-12-07 16:05:36.516][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:36.518][cch$loadFileContent] Trying to load 1 files from cache: [1]: "79302".
biodb.TRACE[2024-12-07 16:05:36.520][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:05:36.521][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:05:36.522][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:36.524][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:05:36.525][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:05:36.526][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:05:36.529][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:36.531][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:36.532][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:36.538][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:36.539][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:36.540][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:36.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:36.543][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79302".
biodb.DEBUG[2024-12-07 16:05:36.546][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:05:36.548][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:05:36.549][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79302".
biodb.TRACE[2024-12-07 16:05:36.993][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79302).
biodb.DEBUG[2024-12-07 16:05:37.408][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:05:37.411][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/db109891c430ecee6c4d31019e936bb4.content"
biodb.TRACE[2024-12-07 16:05:37.415][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/db109891c430ecee6c4d31019e936bb4.request"
biodb.TRACE[2024-12-07 16:05:37.419][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79302.xml"
biodb.DEBUG[2024-12-07 16:05:37.421][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:05:37.422][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:37.424][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:37.426][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:37.427][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:37.428][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:37.435][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:37.436][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:37.437][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:37.438][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:37.441][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:37.442][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:37.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.445][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:37.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:37.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.451][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:37.452][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:37.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.455][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.456][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:37.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:37.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.461][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:37.463][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:37.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.465][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.466][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:37.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:37.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.472][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:37.473][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:37.474][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.475][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.477][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:37.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:37.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.482][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:37.483][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:37.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.485][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.487][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:37.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:37.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.492][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:37.493][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:37.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.496][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.497][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:37.499][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:37.500][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.501][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.502][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:37.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:37.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.507][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.509][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.511][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.512][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.518][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:37.519][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:37.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.521][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.523][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:37.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:37.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.528][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:37.529][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:37.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.531][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.533][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:37.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:37.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.538][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:37.539][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:37.540][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.541][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.543][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:37.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:37.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.548][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:37.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:37.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.553][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:37.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:37.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:37.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:37.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.563][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:37.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:37.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.568][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:37.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:37.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.572][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:37.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:37.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:37.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:37.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.582][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:37.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:37.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:37.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:37.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:37.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:37.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:37.597][self$createEntryFromContent] Accession numbers: 79302.
biodb.TRACE[2024-12-07 16:05:37.599][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.603][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.608][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:37.613][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:37.614][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:37.615][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:37.621][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:37.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:37.624][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:37.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:37.626][private$loadEntries] Creating entries from ids [1]: "84164".
biodb.DEBUG[2024-12-07 16:05:37.627][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:37.629][cch$loadFileContent] Trying to load 1 files from cache: [1]: "84164".
biodb.TRACE[2024-12-07 16:05:37.631][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:05:37.632][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:05:37.634][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:37.635][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:05:37.636][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:05:37.637][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:05:37.640][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:37.641][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:37.643][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:37.649][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:37.650][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:37.651][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:37.652][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:37.653][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=84164".
biodb.DEBUG[2024-12-07 16:05:37.657][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:05:37.658][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:05:37.660][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=84164".
biodb.TRACE[2024-12-07 16:05:38.105][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=84164).
biodb.DEBUG[2024-12-07 16:05:38.521][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:05:38.537][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5878d01d3db7a255abcfdf35c60dd985.content"
biodb.TRACE[2024-12-07 16:05:38.542][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5878d01d3db7a255abcfdf35c60dd985.request"
biodb.TRACE[2024-12-07 16:05:38.546][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/84164.xml"
biodb.DEBUG[2024-12-07 16:05:38.548][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:05:38.550][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:38.552][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:38.554][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:38.555][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:38.556][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:38.563][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:38.564][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:38.565][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:38.566][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:38.569][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:38.570][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:38.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:38.573][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:38.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:38.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:38.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:38.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:38.580][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:38.581][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:38.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:38.583][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:38.585][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:38.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:38.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:38.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:38.590][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:38.591][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:38.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:38.594][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:38.595][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:38.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:38.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:38.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:38.604][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:38.605][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:38.607][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:38.609][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:38.612][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:38.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:38.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:38.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:38.621][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:38.623][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:38.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:38.626][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:38.629][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:38.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:38.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:38.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:38.635][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:38.637][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:38.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:38.640][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:38.642][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:38.643][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:38.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:38.645][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:38.647][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:38.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:38.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:38.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:38.652][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:38.653][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:38.655][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:38.656][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:38.657][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:38.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:38.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:38.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:38.662][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:38.664][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:38.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:38.666][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:38.668][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:38.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:38.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:38.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:38.673][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:38.674][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:38.675][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:38.677][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:38.678][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:38.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:38.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:38.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:38.683][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:38.684][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:38.686][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:38.687][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:38.688][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:38.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:38.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:38.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:38.693][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:38.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:38.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:38.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:38.698][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:38.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:38.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:38.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:38.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:38.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:38.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:38.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:38.708][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:38.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:38.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:38.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:38.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:38.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:38.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:38.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:38.718][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:38.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:38.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:38.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:38.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:38.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:38.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:38.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:38.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:38.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:38.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:38.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:38.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:38.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:38.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:38.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:38.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:38.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:38.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:38.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:38.743][self$createEntryFromContent] Accession numbers: 84164.
biodb.TRACE[2024-12-07 16:05:38.745][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:38.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:38.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:38.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:38.750][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:38.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:38.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:38.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:38.755][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:38.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:38.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:38.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:38.760][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:38.761][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:38.762][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:38.768][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:38.769][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:38.771][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:38.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:38.773][private$loadEntries] Creating entries from ids [1]: "132314".
biodb.DEBUG[2024-12-07 16:05:38.774][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:38.776][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132314".
biodb.TRACE[2024-12-07 16:05:38.778][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:05:38.779][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:05:38.781][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:38.782][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:05:38.783][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:05:38.784][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:05:38.787][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:38.789][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:38.790][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:38.796][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:38.797][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:38.798][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:38.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:38.801][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132314".
biodb.DEBUG[2024-12-07 16:05:38.804][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:05:38.806][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:05:38.807][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132314".
biodb.TRACE[2024-12-07 16:05:39.258][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132314).
biodb.DEBUG[2024-12-07 16:05:39.676][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:05:39.679][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/faff8e4827734119a684907f214879a2.content"
biodb.TRACE[2024-12-07 16:05:39.683][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/faff8e4827734119a684907f214879a2.request"
biodb.TRACE[2024-12-07 16:05:39.686][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132314.xml"
biodb.DEBUG[2024-12-07 16:05:39.689][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:05:39.690][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:39.691][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:39.693][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:39.695][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:39.696][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:39.702][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:39.703][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:39.705][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:39.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:39.708][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:39.710][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:39.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:39.712][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:39.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:39.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:39.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:39.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:39.719][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:39.720][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:39.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:39.722][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:39.724][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:39.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:39.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:39.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:39.729][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:39.730][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:39.732][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:39.733][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:39.734][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:39.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:39.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:39.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:39.739][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:39.741][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:39.742][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:39.743][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:39.745][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:39.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:39.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:39.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:39.750][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:39.751][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:39.752][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:39.753][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:39.755][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:39.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:39.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:39.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:39.760][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:39.761][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:39.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:39.764][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:39.765][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:39.767][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:39.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:39.769][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:39.770][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:39.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:39.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:39.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:39.776][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:39.777][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:39.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:39.779][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:39.781][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:39.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:39.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:39.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:39.786][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:39.787][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:39.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:39.790][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:39.791][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:39.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:39.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:39.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:39.797][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:39.798][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:39.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:39.800][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:39.802][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:39.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:39.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:39.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:39.807][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:39.808][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:39.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:39.810][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:39.812][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:39.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:39.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:39.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:39.817][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:39.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:39.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:39.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:39.822][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:39.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:39.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:39.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:39.843][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:39.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:39.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:39.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:39.849][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:39.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:39.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:39.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:39.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:39.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:39.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:39.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:39.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:39.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:39.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:39.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:39.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:39.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:39.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:39.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:39.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:39.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:39.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:39.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:39.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:39.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:39.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:39.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:39.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:39.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:39.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:39.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:39.884][self$createEntryFromContent] Accession numbers: 132314.
biodb.TRACE[2024-12-07 16:05:39.885][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:39.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:39.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:39.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:39.890][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:39.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:39.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:39.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:39.895][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:39.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:39.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:39.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:39.900][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:39.901][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:39.902][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:39.908][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:39.910][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:39.911][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:39.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:39.913][private$loadEntries] Creating entries from ids [1]: "132338".
biodb.DEBUG[2024-12-07 16:05:39.914][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:39.916][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132338".
biodb.TRACE[2024-12-07 16:05:39.918][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:05:39.919][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:05:39.921][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:39.922][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:05:39.923][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:05:39.924][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:05:39.928][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:39.929][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:39.930][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:39.936][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:39.937][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:39.939][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:39.940][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:39.941][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132338".
biodb.DEBUG[2024-12-07 16:05:39.945][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:05:39.946][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:05:39.948][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132338".
biodb.TRACE[2024-12-07 16:05:40.386][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132338).
biodb.DEBUG[2024-12-07 16:05:40.804][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:05:40.807][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ab2b9171a775a690a32a30e73cf2a1c.content"
biodb.TRACE[2024-12-07 16:05:40.811][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ab2b9171a775a690a32a30e73cf2a1c.request"
biodb.TRACE[2024-12-07 16:05:40.815][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132338.xml"
biodb.DEBUG[2024-12-07 16:05:40.817][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:05:40.818][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:40.820][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:40.822][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:40.823][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:40.824][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:40.831][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:40.832][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:40.833][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:40.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:40.837][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:40.838][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:40.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:40.841][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:40.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:40.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:40.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:40.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:40.848][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:40.849][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:40.850][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:40.851][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:40.853][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:40.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:40.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:40.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:40.858][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:40.860][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:40.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:40.862][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:40.864][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:40.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:40.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:40.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:40.869][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:40.871][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:40.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:40.873][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:40.875][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:40.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:40.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:40.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:40.880][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:40.881][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:40.882][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:40.884][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:40.885][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:40.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:40.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:40.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:40.890][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:40.892][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:40.893][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:40.894][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:40.896][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:40.897][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:40.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:40.899][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:40.901][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:40.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:40.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:40.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:40.906][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:40.908][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:40.909][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:40.910][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:40.912][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:40.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:40.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:40.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:40.917][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:40.918][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:40.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:40.921][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:40.923][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:40.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:40.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:40.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:40.928][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:40.929][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:40.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:40.932][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:40.933][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:40.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:40.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:40.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:40.939][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:40.940][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:40.941][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:40.943][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:40.944][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:40.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:40.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:40.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:40.950][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:40.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:40.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:40.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:40.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:40.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:40.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:40.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:40.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:40.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:40.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:40.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:40.965][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:40.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:40.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:40.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:40.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:40.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:40.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:40.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:40.975][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:40.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:40.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:40.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:40.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:40.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:40.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:40.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:40.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:40.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:40.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:40.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:40.991][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:40.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:40.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:40.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:40.996][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:40.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:40.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:41.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:41.001][self$createEntryFromContent] Accession numbers: 132338.
biodb.TRACE[2024-12-07 16:05:41.002][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:41.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:41.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:41.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:41.007][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:41.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:41.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:41.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:41.012][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:41.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:41.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:41.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:41.017][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:41.019][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:41.020][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:41.028][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:41.030][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:41.031][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:41.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:41.034][private$loadEntries] Creating entries from ids [1]: "139019".
biodb.DEBUG[2024-12-07 16:05:41.035][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:41.037][cch$loadFileContent] Trying to load 1 files from cache: [1]: "139019".
biodb.TRACE[2024-12-07 16:05:41.039][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:05:41.040][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:05:41.042][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:41.043][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:05:41.044][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:05:41.045][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:05:41.049][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:41.050][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:41.051][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:41.058][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:41.059][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:41.060][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:41.061][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:41.063][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139019".
biodb.DEBUG[2024-12-07 16:05:41.066][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:05:41.068][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:05:41.070][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139019".
biodb.TRACE[2024-12-07 16:05:41.512][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139019).
biodb.DEBUG[2024-12-07 16:05:41.928][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:05:41.931][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c6e6f1783364d5307c1e22caca9f3324.content"
biodb.TRACE[2024-12-07 16:05:41.936][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c6e6f1783364d5307c1e22caca9f3324.request"
biodb.TRACE[2024-12-07 16:05:41.940][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/139019.xml"
biodb.DEBUG[2024-12-07 16:05:41.942][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:05:41.943][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:41.945][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:41.947][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:41.948][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:41.950][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:41.957][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:41.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:41.959][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:41.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:41.964][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:41.965][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:41.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:41.968][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:41.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:41.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:41.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:41.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:41.989][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:41.990][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:41.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:41.993][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:41.995][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:41.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:41.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:41.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:42.001][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:42.002][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:42.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:42.005][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:42.007][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:42.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:42.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:42.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:42.012][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:42.013][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:42.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:42.016][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:42.017][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:42.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:42.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:42.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:42.022][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:42.024][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:42.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:42.026][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:42.028][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:42.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:42.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:42.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:42.033][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:42.034][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:42.035][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:42.037][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:42.038][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:42.039][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:42.041][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:42.042][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:42.043][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:42.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:42.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:42.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:42.049][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:42.050][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:42.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:42.052][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:42.054][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:42.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:42.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:42.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:42.059][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:42.060][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:42.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:42.063][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:42.064][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:42.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:42.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:42.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:42.070][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:42.071][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:42.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:42.073][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:42.075][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:42.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:42.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:42.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:42.080][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:42.082][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:42.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:42.084][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:42.086][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:42.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:42.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:42.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:42.091][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:42.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:42.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:42.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:42.096][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:42.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:42.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:42.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:42.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:42.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:42.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:42.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:42.106][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:42.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:42.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:42.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:42.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:42.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:42.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:42.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:42.116][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:42.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:42.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:42.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:42.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:42.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:42.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:42.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:42.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:42.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:42.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:42.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:42.132][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:42.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:42.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:42.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:42.137][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:42.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:42.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:42.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:42.142][self$createEntryFromContent] Accession numbers: 139019.
biodb.TRACE[2024-12-07 16:05:42.143][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:42.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:42.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:42.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:42.148][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:42.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:42.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:42.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:42.153][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:42.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:42.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:42.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:42.158][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:42.160][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:42.161][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:42.167][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:42.168][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:42.170][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:42.171][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:42.172][private$loadEntries] Creating entries from ids [1]: "139367".
biodb.DEBUG[2024-12-07 16:05:42.173][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:42.175][cch$loadFileContent] Trying to load 1 files from cache: [1]: "139367".
biodb.TRACE[2024-12-07 16:05:42.177][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:05:42.178][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:05:42.180][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:42.181][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:05:42.182][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:05:42.184][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:05:42.187][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:42.188][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:42.189][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:42.196][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:42.197][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:42.198][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:42.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:42.201][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139367".
biodb.DEBUG[2024-12-07 16:05:42.204][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:05:42.206][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:05:42.208][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139367".
biodb.TRACE[2024-12-07 16:05:42.648][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139367).
biodb.DEBUG[2024-12-07 16:05:43.069][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:05:43.071][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ad7d38680a9a89d96fe967aa23d4180d.content"
biodb.TRACE[2024-12-07 16:05:43.076][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ad7d38680a9a89d96fe967aa23d4180d.request"
biodb.TRACE[2024-12-07 16:05:43.079][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/139367.xml"
biodb.DEBUG[2024-12-07 16:05:43.081][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:05:43.083][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:43.084][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:43.086][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:43.087][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:43.088][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:43.095][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:43.096][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:43.097][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:43.098][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:43.101][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:43.102][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:43.104][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.105][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:43.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:43.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:43.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:43.111][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:43.113][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:43.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.115][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:43.117][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:43.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:43.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:43.122][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:43.123][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:43.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.126][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:43.127][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:43.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:43.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:43.133][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:43.134][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:43.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.136][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:43.138][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:43.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:43.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:43.143][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:43.144][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:43.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.147][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:43.148][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:43.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:43.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:43.153][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:43.154][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:43.156][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.157][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:43.158][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:43.160][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:43.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.162][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:43.164][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:43.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:43.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:43.169][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:43.170][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:43.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.172][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:43.174][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:43.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:43.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:43.179][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:43.180][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:43.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.183][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:43.184][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:43.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:43.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:43.190][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:43.191][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:43.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.193][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:43.195][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:43.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:43.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:43.200][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:43.201][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:43.202][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.204][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:43.205][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:43.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:43.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:43.210][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:43.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:43.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:43.215][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:43.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:43.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:43.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:43.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:43.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:43.225][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:43.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:43.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:43.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:43.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:43.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:43.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:43.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:43.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:43.240][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:43.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:43.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:43.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:43.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:43.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:43.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:43.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:43.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:43.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:43.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:43.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:43.270][self$createEntryFromContent] Accession numbers: 139367.
biodb.TRACE[2024-12-07 16:05:43.272][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:43.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:43.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:43.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:43.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:43.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:43.282][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:43.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:43.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:43.287][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:43.288][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:43.290][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:43.296][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:43.297][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:43.298][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:43.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:43.301][private$loadEntries] Creating entries from ids [1]: "145029".
biodb.DEBUG[2024-12-07 16:05:43.302][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:43.304][cch$loadFileContent] Trying to load 1 files from cache: [1]: "145029".
biodb.TRACE[2024-12-07 16:05:43.306][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:05:43.307][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:05:43.308][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:43.309][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:05:43.311][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:05:43.312][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:05:43.315][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:43.316][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:43.317][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:43.324][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:43.325][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:43.326][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:43.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:43.328][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=145029".
biodb.DEBUG[2024-12-07 16:05:43.332][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:05:43.333][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:05:43.335][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=145029".
biodb.TRACE[2024-12-07 16:05:43.790][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=145029).
biodb.DEBUG[2024-12-07 16:05:44.301][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:05:44.303][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6db4642c7bdbd10dc105b3470394caa5.content"
biodb.TRACE[2024-12-07 16:05:44.308][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6db4642c7bdbd10dc105b3470394caa5.request"
biodb.TRACE[2024-12-07 16:05:44.311][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/145029.xml"
biodb.DEBUG[2024-12-07 16:05:44.313][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:05:44.315][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:44.316][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:44.318][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:44.319][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:44.320][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:44.327][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:44.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:44.329][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:44.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:44.333][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:44.335][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:44.336][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.337][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:44.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:44.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.344][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:44.345][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:44.346][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.348][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.349][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:44.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:44.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.355][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:44.356][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:44.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.358][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.360][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:44.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:44.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.365][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:44.366][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:44.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.369][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.370][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:44.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:44.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.376][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:44.377][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:44.378][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.379][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.381][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:44.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:44.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.386][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:44.388][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:44.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.390][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.392][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:44.393][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:44.394][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.395][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.397][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:44.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:44.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.402][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:44.404][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:44.405][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.406][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.408][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:44.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:44.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.413][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:44.415][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:44.416][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.417][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.419][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:44.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:44.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.424][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:44.425][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:44.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.428][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.429][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:44.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:44.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.435][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:44.436][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:44.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.438][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.440][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:44.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:44.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.445][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:44.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:44.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.450][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:44.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:44.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:44.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:44.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.460][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:44.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:44.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:44.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:44.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:44.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:44.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:44.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:44.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:44.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:44.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:44.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:44.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:44.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:44.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:44.496][self$createEntryFromContent] Accession numbers: 145029.
biodb.TRACE[2024-12-07 16:05:44.498][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:44.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:44.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.503][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:44.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:44.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.508][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:44.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:44.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:44.513][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:44.514][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:44.515][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:44.522][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:44.523][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:44.524][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:44.525][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:44.527][private$loadEntries] Creating entries from ids [1]: "173077".
biodb.DEBUG[2024-12-07 16:05:44.528][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:44.530][cch$loadFileContent] Trying to load 1 files from cache: [1]: "173077".
biodb.TRACE[2024-12-07 16:05:44.531][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:05:44.533][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:05:44.534][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:44.536][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:05:44.537][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:05:44.538][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:05:44.541][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:44.543][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:44.544][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:44.551][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:44.552][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:44.553][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:44.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:44.556][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=173077".
biodb.DEBUG[2024-12-07 16:05:44.560][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:05:44.561][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:05:44.563][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=173077".
biodb.TRACE[2024-12-07 16:05:45.026][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=173077).
biodb.DEBUG[2024-12-07 16:05:45.547][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:05:45.550][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/337fedbe654250105ac3b03683794b9b.content"
biodb.TRACE[2024-12-07 16:05:45.554][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/337fedbe654250105ac3b03683794b9b.request"
biodb.TRACE[2024-12-07 16:05:45.558][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/173077.xml"
biodb.DEBUG[2024-12-07 16:05:45.560][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:05:45.562][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:45.563][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:45.565][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:45.566][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:45.568][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:45.574][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:45.575][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:45.577][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:45.578][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:45.581][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:45.582][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:45.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:45.585][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:45.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:45.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:45.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:45.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:45.591][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:45.593][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:45.594][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:45.595][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:45.597][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:45.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:45.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:45.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:45.602][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:45.603][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:45.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:45.606][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:45.607][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:45.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:45.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:45.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:45.612][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:45.614][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:45.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:45.616][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:45.618][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:45.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:45.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:45.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:45.623][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:45.624][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:45.626][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:45.627][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:45.628][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:45.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:45.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:45.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:45.647][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:45.648][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:45.650][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:45.651][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:45.653][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:45.655][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:45.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:45.657][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:45.659][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:45.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:45.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:45.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:45.664][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:45.666][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:45.667][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:45.668][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:45.670][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:45.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:45.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:45.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:45.675][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:45.676][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:45.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:45.679][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:45.681][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:45.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:45.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:45.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:45.686][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:45.687][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:45.688][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:45.689][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:45.691][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:45.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:45.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:45.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:45.696][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:45.697][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:45.699][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:45.700][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:45.701][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:45.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:45.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:45.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:45.707][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:45.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:45.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:45.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:45.712][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:45.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:45.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:45.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:45.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:45.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:45.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:45.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:45.722][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:45.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:45.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:45.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:45.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:45.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:45.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:45.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:45.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:45.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:45.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:45.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:45.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:45.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:45.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:45.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:45.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:45.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:45.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:45.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:45.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:45.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:45.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:45.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:45.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:45.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:45.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:45.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:45.757][self$createEntryFromContent] Accession numbers: 173077.
biodb.TRACE[2024-12-07 16:05:45.759][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:45.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:45.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:45.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:45.764][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:45.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:45.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:45.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:45.769][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:45.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:45.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:45.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:45.774][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:45.775][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:45.776][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:45.782][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:45.784][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:45.785][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:45.786][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:45.787][private$loadEntries] Creating entries from ids [1]: "365445".
biodb.DEBUG[2024-12-07 16:05:45.788][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:45.790][cch$loadFileContent] Trying to load 1 files from cache: [1]: "365445".
biodb.TRACE[2024-12-07 16:05:45.792][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:05:45.793][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:05:45.795][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:45.796][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:05:45.797][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:05:45.799][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:05:45.802][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:45.803][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:45.804][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:45.811][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:45.812][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:45.813][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:45.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:45.816][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=365445".
biodb.DEBUG[2024-12-07 16:05:45.819][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:05:45.820][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:05:45.822][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=365445".
biodb.TRACE[2024-12-07 16:05:46.320][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=365445).
biodb.DEBUG[2024-12-07 16:05:46.742][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:05:46.744][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/026ecb4be6491f40bcefe5cdf8425328.content"
biodb.TRACE[2024-12-07 16:05:46.749][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/026ecb4be6491f40bcefe5cdf8425328.request"
biodb.TRACE[2024-12-07 16:05:46.752][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365445.xml"
biodb.DEBUG[2024-12-07 16:05:46.754][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:05:46.755][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:46.757][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:46.759][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:46.760][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:46.761][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:46.767][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:46.768][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:46.769][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:46.771][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:46.773][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:46.775][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:46.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:46.777][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:46.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:46.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:46.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:46.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:46.784][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:46.785][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:46.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:46.787][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:46.789][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:46.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:46.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:46.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:46.794][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:46.795][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:46.796][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:46.798][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:46.799][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:46.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:46.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:46.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:46.804][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:46.806][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:46.807][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:46.808][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:46.810][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:46.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:46.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:46.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:46.815][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:46.816][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:46.817][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:46.818][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:46.820][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:46.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:46.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:46.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:46.825][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:46.826][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:46.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:46.829][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:46.830][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:46.832][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:46.833][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:46.834][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:46.836][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:46.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:46.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:46.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:46.841][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:46.842][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:46.843][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:46.844][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:46.846][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:46.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:46.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:46.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:46.851][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:46.852][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:46.854][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:46.855][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:46.857][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:46.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:46.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:46.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:46.862][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:46.863][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:46.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:46.866][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:46.867][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:46.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:46.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:46.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:46.872][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:46.874][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:46.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:46.876][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:46.877][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:46.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:46.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:46.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:46.883][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:46.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:46.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:46.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:46.888][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:46.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:46.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:46.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:46.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:46.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:46.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:46.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:46.898][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:46.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:46.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:46.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:46.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:46.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:46.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:46.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:46.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:46.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:46.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:46.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:46.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:46.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:46.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:46.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:46.918][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:46.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:46.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:46.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:46.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:46.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:46.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:46.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:46.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:46.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:46.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:46.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:46.933][self$createEntryFromContent] Accession numbers: 365445.
biodb.TRACE[2024-12-07 16:05:46.934][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:46.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:46.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:46.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:46.940][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:46.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:46.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:46.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:46.945][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:46.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:46.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:46.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:46.950][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:46.951][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:46.952][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:46.958][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:46.960][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:46.961][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:46.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:46.963][private$loadEntries] Creating entries from ids [1]: "32151".
biodb.DEBUG[2024-12-07 16:05:46.965][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:46.967][cch$loadFileContent] Trying to load 1 files from cache: [1]: "32151".
biodb.TRACE[2024-12-07 16:05:46.968][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:05:46.970][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:05:46.971][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:46.979][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:05:46.984][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:05:46.985][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:05:46.989][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:46.990][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:46.991][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:46.998][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:46.999][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:47.000][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:47.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:47.003][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=32151".
biodb.DEBUG[2024-12-07 16:05:47.007][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:05:47.008][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:05:47.010][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=32151".
biodb.TRACE[2024-12-07 16:05:47.448][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=32151).
biodb.DEBUG[2024-12-07 16:05:47.866][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:05:47.869][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/094c4c16dd654c0e11594a0cd5a42217.content"
biodb.TRACE[2024-12-07 16:05:47.873][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/094c4c16dd654c0e11594a0cd5a42217.request"
biodb.TRACE[2024-12-07 16:05:47.876][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/32151.xml"
biodb.DEBUG[2024-12-07 16:05:47.878][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:05:47.880][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:47.881][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:47.883][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:47.884][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:47.885][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:47.892][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:47.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:47.894][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:47.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:47.898][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:47.899][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:47.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:47.902][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:47.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:47.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:47.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:47.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:47.908][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:47.909][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:47.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:47.912][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:47.913][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:47.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:47.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:47.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:47.918][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:47.920][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:47.921][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:47.922][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:47.924][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:47.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:47.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:47.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:47.929][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:47.930][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:47.932][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:47.933][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:47.934][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:47.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:47.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:47.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:47.939][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:47.941][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:47.942][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:47.943][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:47.945][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:47.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:47.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:47.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:47.950][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:47.951][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:47.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:47.953][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:47.955][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:47.956][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:47.957][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:47.959][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:47.960][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:47.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:47.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:47.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:47.965][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:47.967][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:47.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:47.969][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:47.971][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:47.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:47.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:47.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:47.976][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:47.977][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:47.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:47.979][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:47.981][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:47.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:47.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:47.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:47.986][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:47.988][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:47.989][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:47.990][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:47.991][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:47.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:47.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:47.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:47.997][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:47.998][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:47.999][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:48.000][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:48.002][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:48.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:48.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:48.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:48.007][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:48.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:48.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:48.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:48.012][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:48.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:48.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:48.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:48.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:48.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:48.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:48.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:48.022][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:48.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:48.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:48.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:48.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:48.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:48.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:48.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:48.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:48.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:48.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:48.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:48.037][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:48.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:48.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:48.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:48.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:48.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:48.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:48.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:48.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:48.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:48.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:48.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:48.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:48.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:48.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:48.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:48.058][self$createEntryFromContent] Accession numbers: 32151.
biodb.TRACE[2024-12-07 16:05:48.059][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:48.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:48.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:48.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:48.064][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:48.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:48.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:48.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:48.069][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:48.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:48.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:48.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:48.074][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:48.075][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:48.076][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:48.082][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:48.084][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:48.085][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:48.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:48.087][private$loadEntries] Creating entries from ids [1]: "67676".
biodb.DEBUG[2024-12-07 16:05:48.088][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:48.090][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67676".
biodb.TRACE[2024-12-07 16:05:48.092][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:05:48.093][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:05:48.095][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:48.096][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:05:48.097][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:05:48.099][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:05:48.102][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:48.103][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:48.104][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:48.110][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:48.112][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:48.113][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:48.114][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:48.115][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67676".
biodb.DEBUG[2024-12-07 16:05:48.119][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:05:48.120][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:05:48.122][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67676".
biodb.TRACE[2024-12-07 16:05:48.560][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67676).
biodb.DEBUG[2024-12-07 16:05:48.976][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:05:48.979][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f87eff9f669415e5528b4d9281ce70e2.content"
biodb.TRACE[2024-12-07 16:05:48.984][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f87eff9f669415e5528b4d9281ce70e2.request"
biodb.TRACE[2024-12-07 16:05:48.988][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67676.xml"
biodb.DEBUG[2024-12-07 16:05:48.990][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:05:48.992][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:48.994][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:48.996][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:48.997][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:48.998][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:49.005][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:49.006][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:49.007][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:49.008][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:49.011][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:49.012][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:49.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:49.015][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:49.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:49.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:49.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:49.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:49.022][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:49.023][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:49.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:49.025][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:49.027][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:49.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:49.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:49.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:49.032][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:49.034][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:49.035][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:49.036][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:49.038][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:49.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:49.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:49.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:49.043][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:49.044][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:49.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:49.047][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:49.048][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:49.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:49.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:49.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:49.053][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:49.055][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:49.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:49.057][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:49.059][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:49.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:49.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:49.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:49.064][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:49.065][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:49.066][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:49.068][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:49.069][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:49.071][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:49.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:49.073][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:49.075][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:49.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:49.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:49.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:49.080][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:49.081][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:49.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:49.084][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:49.085][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:49.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:49.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:49.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:49.090][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:49.092][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:49.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:49.094][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:49.096][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:49.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:49.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:49.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:49.101][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:49.115][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:49.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:49.118][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:49.120][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:49.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:49.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:49.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:49.125][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:49.127][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:49.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:49.129][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:49.131][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:49.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:49.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:49.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:49.136][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:49.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:49.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:49.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:49.141][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:49.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:49.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:49.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:49.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:49.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:49.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:49.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:49.151][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:49.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:49.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:49.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:49.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:49.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:49.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:49.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:49.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:49.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:49.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:49.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:49.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:49.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:49.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:49.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:49.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:49.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:49.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:49.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:49.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:49.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:49.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:49.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:49.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:49.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:49.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:49.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:49.187][self$createEntryFromContent] Accession numbers: 67676.
biodb.TRACE[2024-12-07 16:05:49.189][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:49.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:49.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:49.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:49.194][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:49.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:49.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:49.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:49.199][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:49.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:49.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:49.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:49.204][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:49.205][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:49.206][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:49.213][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:49.214][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:49.215][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:49.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:49.218][private$loadEntries] Creating entries from ids [1]: "69690".
biodb.DEBUG[2024-12-07 16:05:49.219][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:49.221][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69690".
biodb.TRACE[2024-12-07 16:05:49.223][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:05:49.224][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:05:49.226][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:49.227][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:05:49.228][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:05:49.230][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:05:49.233][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:49.234][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:49.236][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:49.242][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:49.244][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:49.245][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:49.246][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:49.247][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69690".
biodb.DEBUG[2024-12-07 16:05:49.251][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:05:49.252][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:05:49.254][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69690".
biodb.TRACE[2024-12-07 16:05:49.691][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69690).
biodb.DEBUG[2024-12-07 16:05:50.105][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:05:50.107][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ce43467f7e4550d502ff0cc79c06666.content"
biodb.TRACE[2024-12-07 16:05:50.112][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ce43467f7e4550d502ff0cc79c06666.request"
biodb.TRACE[2024-12-07 16:05:50.115][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69690.xml"
biodb.DEBUG[2024-12-07 16:05:50.117][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:05:50.118][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:50.120][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:50.122][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:50.123][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:50.124][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:50.130][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:50.132][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:50.133][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:50.134][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:50.137][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:50.138][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:50.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:50.140][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:50.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:50.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:50.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:50.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:50.147][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:50.148][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:50.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:50.151][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:50.152][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:50.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:50.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:50.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:50.157][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:50.159][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:50.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:50.161][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:50.163][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:50.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:50.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:50.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:50.168][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:50.169][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:50.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:50.171][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:50.173][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:50.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:50.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:50.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:50.178][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:50.179][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:50.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:50.182][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:50.183][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:50.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:50.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:50.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:50.188][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:50.190][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:50.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:50.192][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:50.194][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:50.195][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:50.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:50.197][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:50.199][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:50.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:50.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:50.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:50.204][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:50.205][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:50.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:50.208][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:50.209][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:50.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:50.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:50.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:50.214][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:50.216][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:50.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:50.218][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:50.220][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:50.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:50.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:50.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:50.225][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:50.226][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:50.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:50.229][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:50.230][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:50.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:50.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:50.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:50.235][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:50.237][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:50.238][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:50.239][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:50.240][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:50.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:50.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:50.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:50.246][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:50.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:50.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:50.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:50.251][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:50.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:50.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:50.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:50.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:50.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:50.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:50.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:50.261][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:50.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:50.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:50.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:50.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:50.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:50.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:50.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:50.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:50.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:50.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:50.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:50.276][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:50.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:50.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:50.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:50.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:50.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:50.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:50.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:50.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:50.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:50.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:50.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:50.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:50.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:50.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:50.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:50.296][self$createEntryFromContent] Accession numbers: 69690.
biodb.TRACE[2024-12-07 16:05:50.297][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:50.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:50.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:50.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:50.302][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:50.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:50.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:50.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:50.307][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:50.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:50.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:50.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:50.312][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:50.313][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:50.314][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:50.321][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:50.322][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:50.323][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:50.324][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:50.325][private$loadEntries] Creating entries from ids [1]: "69734".
biodb.DEBUG[2024-12-07 16:05:50.327][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:50.329][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69734".
biodb.TRACE[2024-12-07 16:05:50.330][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:05:50.332][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:05:50.333][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:50.334][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:05:50.335][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:05:50.337][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:05:50.340][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:50.341][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:50.342][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:50.348][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:50.350][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:50.351][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:50.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:50.353][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69734".
biodb.DEBUG[2024-12-07 16:05:50.357][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:05:50.358][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:05:50.360][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69734".
biodb.TRACE[2024-12-07 16:05:50.794][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69734).
biodb.DEBUG[2024-12-07 16:05:51.215][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:05:51.218][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3ed7db8dba94801a8856f9bde313afe1.content"
biodb.TRACE[2024-12-07 16:05:51.223][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3ed7db8dba94801a8856f9bde313afe1.request"
biodb.TRACE[2024-12-07 16:05:51.233][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69734.xml"
biodb.DEBUG[2024-12-07 16:05:51.242][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:05:51.243][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:51.245][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:51.247][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:51.248][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:51.250][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:51.256][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:51.258][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:51.259][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:51.260][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:51.263][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:51.264][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:51.266][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:51.267][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:51.268][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:51.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:51.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:51.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:51.273][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:51.275][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:51.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:51.277][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:51.279][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:51.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:51.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:51.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:51.284][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:51.285][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:51.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:51.287][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:51.289][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:51.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:51.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:51.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:51.294][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:51.295][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:51.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:51.298][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:51.299][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:51.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:51.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:51.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:51.304][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:51.305][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:51.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:51.308][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:51.309][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:51.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:51.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:51.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:51.314][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:51.316][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:51.317][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:51.318][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:51.320][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:51.321][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:51.322][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:51.323][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:51.325][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:51.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:51.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:51.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:51.330][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:51.331][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:51.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:51.334][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:51.335][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:51.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:51.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:51.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:51.340][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:51.342][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:51.343][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:51.344][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:51.346][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:51.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:51.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:51.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:51.351][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:51.352][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:51.353][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:51.355][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:51.356][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:51.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:51.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:51.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:51.361][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:51.363][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:51.364][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:51.365][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:51.367][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:51.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:51.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:51.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:51.372][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:51.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:51.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:51.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:51.377][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:51.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:51.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:51.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:51.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:51.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:51.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:51.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:51.387][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:51.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:51.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:51.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:51.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:51.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:51.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:51.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:51.397][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:51.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:51.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:51.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:51.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:51.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:51.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:51.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:51.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:51.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:51.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:51.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:51.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:51.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:51.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:51.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:51.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:51.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:51.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:51.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:51.422][self$createEntryFromContent] Accession numbers: 69734.
biodb.TRACE[2024-12-07 16:05:51.423][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:51.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:51.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:51.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:51.429][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:51.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:51.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:51.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:51.434][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:51.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:51.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:51.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:51.439][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:51.440][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:51.441][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:51.447][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:51.448][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:51.450][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:51.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:51.452][private$loadEntries] Creating entries from ids [1]: "79978".
biodb.DEBUG[2024-12-07 16:05:51.453][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:51.455][cch$loadFileContent] Trying to load 1 files from cache: [1]: "79978".
biodb.TRACE[2024-12-07 16:05:51.457][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:05:51.458][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:05:51.460][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:51.461][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:05:51.462][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:05:51.463][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:05:51.467][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:51.468][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:51.469][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:51.475][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:51.477][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:51.478][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:51.479][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:51.480][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79978".
biodb.DEBUG[2024-12-07 16:05:51.484][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:05:51.485][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:05:51.487][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79978".
biodb.TRACE[2024-12-07 16:05:51.919][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79978).
biodb.DEBUG[2024-12-07 16:05:52.335][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:05:52.338][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fb887d003d6fc3b4aa767483d261b31c.content"
biodb.TRACE[2024-12-07 16:05:52.343][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fb887d003d6fc3b4aa767483d261b31c.request"
biodb.TRACE[2024-12-07 16:05:52.346][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79978.xml"
biodb.DEBUG[2024-12-07 16:05:52.348][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:05:52.349][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:52.351][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:52.353][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:52.354][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:52.355][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:52.361][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:52.363][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:52.364][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:52.365][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:52.368][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:52.369][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:52.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.371][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:52.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:52.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:52.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:52.378][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:52.379][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:52.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.382][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:52.383][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:52.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:52.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:52.388][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:52.390][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:52.391][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.392][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:52.394][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:52.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:52.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:52.399][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:52.400][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:52.401][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.402][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:52.404][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:52.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:52.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:52.409][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:52.410][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:52.412][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.413][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:52.414][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:52.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:52.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:52.419][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:52.421][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:52.422][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.423][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:52.425][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:52.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:52.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:52.430][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:52.431][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:52.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.433][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:52.435][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:52.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:52.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:52.440][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:52.441][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:52.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.444][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:52.445][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:52.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:52.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:52.450][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:52.452][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:52.453][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.454][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:52.456][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:52.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:52.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:52.461][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:52.462][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:52.463][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.465][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:52.466][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:52.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:52.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:52.471][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:52.473][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:52.474][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.475][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:52.476][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:52.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:52.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:52.482][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:52.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:52.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:52.486][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:52.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:52.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:52.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:52.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:52.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:52.507][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:52.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:52.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:52.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:52.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:52.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:52.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:52.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:52.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:52.522][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:52.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:52.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:52.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:52.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:52.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:52.532][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:52.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:52.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:52.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:52.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:52.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:52.542][self$createEntryFromContent] Accession numbers: 79978.
biodb.TRACE[2024-12-07 16:05:52.544][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:52.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:52.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:52.549][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:52.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:52.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:52.554][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:52.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:52.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:52.559][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:52.560][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:52.561][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:52.567][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:52.569][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:52.570][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:52.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:52.572][private$loadEntries] Creating entries from ids [1]: "88771".
biodb.DEBUG[2024-12-07 16:05:52.574][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:52.575][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88771".
biodb.TRACE[2024-12-07 16:05:52.577][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:05:52.578][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:05:52.580][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:52.581][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:05:52.582][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:05:52.584][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:05:52.587][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:52.588][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:52.589][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:52.596][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:52.597][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:52.598][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:52.599][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:52.601][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88771".
biodb.DEBUG[2024-12-07 16:05:52.604][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:05:52.606][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:05:52.608][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88771".
biodb.TRACE[2024-12-07 16:05:53.048][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88771).
biodb.DEBUG[2024-12-07 16:05:53.464][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:05:53.467][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f96325cdb7f39b42d0ab67a7fc41aced.content"
biodb.TRACE[2024-12-07 16:05:53.472][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f96325cdb7f39b42d0ab67a7fc41aced.request"
biodb.TRACE[2024-12-07 16:05:53.475][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88771.xml"
biodb.DEBUG[2024-12-07 16:05:53.478][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:05:53.479][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:53.481][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:53.483][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:53.484][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:53.485][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:53.492][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:53.493][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:53.494][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:53.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:53.498][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:53.500][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:53.501][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.502][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:53.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:53.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.509][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:53.510][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:53.512][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.513][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.514][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:53.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:53.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.519][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:53.521][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:53.522][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.523][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.525][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:53.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:53.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.530][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:53.531][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:53.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.534][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.535][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:53.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:53.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.540][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:53.541][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:53.543][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.544][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.545][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:53.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:53.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.550][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:53.552][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:53.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.554][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.555][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:53.557][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:53.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.559][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.561][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:53.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:53.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.566][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:53.567][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:53.568][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.569][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.571][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:53.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:53.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.576][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:53.577][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:53.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.580][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.581][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:53.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:53.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.586][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:53.588][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:53.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.590][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.591][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:53.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:53.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.597][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:53.598][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:53.599][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.600][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.602][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:53.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:53.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.607][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:53.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:53.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.612][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:53.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:53.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:53.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:53.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.622][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:53.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:53.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:53.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:53.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:53.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:53.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:53.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:53.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:53.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:53.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:53.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:53.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:53.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:53.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:53.656][self$createEntryFromContent] Accession numbers: 88771.
biodb.TRACE[2024-12-07 16:05:53.658][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:53.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:53.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.663][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:53.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:53.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.668][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:53.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:53.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:53.672][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:53.673][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:53.674][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:53.681][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:53.682][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:53.683][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:53.684][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:53.685][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:53.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:53.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.690][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:53.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:53.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.695][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:53.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:53.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:53.700][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:53.701][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:53.702][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:53.708][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:53.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:53.710][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:53.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:53.713][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:53.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:53.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.718][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:53.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:53.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.723][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:53.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:53.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:53.728][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:05:53.730][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:53.731][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:53.732][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:53.738][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:53.739][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:53.740][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:53.741][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:53.743][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:53.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:53.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.748][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:53.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:53.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.753][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:53.754][private$selectFields]
biodb.TRACE[2024-12-07 16:05:53.755][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:05:53.757][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:05:53.758][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:53.759][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:53.760][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:53.762][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.769][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.774][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:53.775][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:53.777][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.778][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.779][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:53.780][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:53.782][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:53.783][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:53.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.785][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.787][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:05:53.788][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:53.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:53.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:53.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:53.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.798][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:53.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:53.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.803][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-12-07 16:05:53.805][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:53.806][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:53.807][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:53.813][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:53.814][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:53.815][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:53.816][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:53.818][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:53.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:53.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.823][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:53.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:53.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.828][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:53.829][private$selectFields]
biodb.TRACE[2024-12-07 16:05:53.830][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:05:53.831][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:05:53.832][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:53.834][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:53.835][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:53.836][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.837][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.838][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:53.840][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:53.841][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.842][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.843][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:53.845][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:53.846][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:53.847][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:53.848][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.849][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.851][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:05:53.852][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:53.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:53.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.857][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:53.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:53.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.862][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:53.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:53.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.867][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2024-12-07 16:05:53.869][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:53.870][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:53.871][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:53.877][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:53.878][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:53.879][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:53.880][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:53.882][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:53.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:53.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.887][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:53.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:53.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.892][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:53.893][private$selectFields]
biodb.TRACE[2024-12-07 16:05:53.894][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:05:53.896][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:05:53.897][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:53.898][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:53.899][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:53.901][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.902][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.903][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:53.904][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:53.906][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.907][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.908][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:53.909][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:53.911][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:53.912][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:53.913][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.914][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.915][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:05:53.917][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:53.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:53.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.922][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:53.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:53.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.927][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:53.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:53.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.932][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2024-12-07 16:05:53.934][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:05:53.935][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:05:53.937][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:53.938][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:53.939][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:53.946][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:53.947][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:53.948][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:53.949][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:53.953][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:05:53.957][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:05:53.959][cch$loadFileContent] Trying to load 1 files from cache: [1]: "a035d13a630066423fab6713592c5e52".
biodb.TRACE[2024-12-07 16:05:53.961][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:05:53.963][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.content".
biodb.DEBUG[2024-12-07 16:05:53.971][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:53.972][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:53.973][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:53.979][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:53.981][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:53.982][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:53.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:53.984][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:53.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:53.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.989][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:53.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:53.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.994][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:53.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:53.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:53.999][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:54.001][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:54.002][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:54.008][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:54.009][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:54.011][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:54.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:54.013][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.018][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.023][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:54.029][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:54.030][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:54.031][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:54.038][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:54.039][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:54.040][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:54.041][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:54.042][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.047][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.052][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:54.057][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:54.058][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:54.059][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:54.066][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:54.067][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:54.068][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:54.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:54.071][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.076][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.081][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:54.086][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:05:54.088][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:54.089][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:54.090][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:54.096][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:54.097][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:54.098][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:54.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:54.100][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.105][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.110][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:54.111][private$selectFields]
biodb.TRACE[2024-12-07 16:05:54.112][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:05:54.114][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:05:54.115][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:54.116][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.117][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.120][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.121][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.122][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.123][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.124][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.126][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:54.127][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:54.128][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.129][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.132][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.133][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:05:54.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.139][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.144][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.149][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2024-12-07 16:05:54.151][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:54.152][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:54.153][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:54.159][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:54.160][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:54.161][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:54.162][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:54.164][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.169][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.173][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:54.175][private$selectFields]
biodb.TRACE[2024-12-07 16:05:54.176][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:05:54.177][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:05:54.185][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:54.187][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.188][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.191][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.192][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.193][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.196][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.197][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:54.198][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:54.200][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.201][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.202][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.203][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.204][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:05:54.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.211][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.215][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.221][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2024-12-07 16:05:54.222][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:54.223][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:54.224][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:54.230][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:54.231][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:54.233][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:54.234][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:54.235][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.240][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.245][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:54.246][private$selectFields]
biodb.TRACE[2024-12-07 16:05:54.247][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:05:54.248][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:05:54.249][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:54.251][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.252][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.254][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.256][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.257][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.258][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.259][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.260][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:54.262][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:54.263][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.264][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.265][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.266][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.268][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:05:54.269][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.274][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.284][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-12-07 16:05:54.285][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:05:54.286][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:05:54.313][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:54.314][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:54.315][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:54.321][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:54.323][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:54.324][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:54.325][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:54.328][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:05:54.332][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:05:54.334][cch$loadFileContent] Trying to load 1 files from cache: [1]: "a035d13a630066423fab6713592c5e52".
biodb.TRACE[2024-12-07 16:05:54.336][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:05:54.337][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.content".
biodb.DEBUG[2024-12-07 16:05:54.345][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:54.347][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:54.348][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:54.354][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:54.355][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:54.356][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:54.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:54.359][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.364][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.369][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:54.374][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:54.375][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:54.376][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:54.382][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:54.384][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:54.385][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:54.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:54.388][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.393][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.398][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:54.403][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:54.404][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:54.405][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:54.411][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:54.413][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:54.414][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:54.415][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:54.416][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.421][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.426][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:54.431][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:54.432][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:54.433][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:54.439][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:54.440][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:54.441][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:54.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:54.444][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.449][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.453][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:54.458][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:54.459][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:54.461][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:54.467][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:54.468][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:54.469][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:54.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:54.471][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.476][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.481][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:54.486][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:54.487][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:54.488][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:54.494][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:54.495][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:54.496][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:54.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:54.499][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.504][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.508][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:54.513][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:54.514][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:54.516][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:54.522][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:54.523][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:54.524][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:54.525][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:54.526][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.531][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.536][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:54.541][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:05:54.543][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:54.544][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:54.545][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:54.551][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:54.552][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:54.553][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:54.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:54.556][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.561][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.566][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:54.567][private$selectFields]
biodb.TRACE[2024-12-07 16:05:54.568][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:05:54.569][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:05:54.570][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:54.571][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.573][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.574][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.575][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.576][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.577][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.580][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.581][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:54.582][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:54.583][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.585][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.587][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.595][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:05:54.597][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.602][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.607][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.612][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2024-12-07 16:05:54.614][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:54.615][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:54.616][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:54.622][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:54.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:54.624][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:54.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:54.627][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.631][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.636][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:54.637][private$selectFields]
biodb.TRACE[2024-12-07 16:05:54.639][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:05:54.640][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:05:54.641][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:54.642][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.643][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.645][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.646][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.647][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.648][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.649][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.650][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.652][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:54.653][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:54.654][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.655][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.658][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.659][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:05:54.660][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.665][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.670][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.675][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-12-07 16:05:54.676][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:54.678][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:54.679][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:54.685][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:54.686][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:54.687][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:54.688][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:54.690][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.694][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.699][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:54.700][private$selectFields]
biodb.TRACE[2024-12-07 16:05:54.702][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:05:54.703][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:05:54.704][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:54.705][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.706][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.709][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.710][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.711][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.713][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.714][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.715][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:54.716][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:54.717][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.719][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.720][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.721][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.722][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:05:54.723][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.728][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.733][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.739][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [34764].
biodb.DEBUG[2024-12-07 16:05:54.740][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:05:54.741][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:05:54.743][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:54.745][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:54.746][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:54.752][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:54.753][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:54.754][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:54.755][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:54.758][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:05:54.763][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:05:54.764][cch$loadFileContent] Trying to load 1 files from cache: [1]: "365d4ea5e0e90826806fec708da6c9ab".
biodb.TRACE[2024-12-07 16:05:54.766][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:05:54.767][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365d4ea5e0e90826806fec708da6c9ab.content".
biodb.DEBUG[2024-12-07 16:05:54.776][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:54.778][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:54.779][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:54.785][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:54.786][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:54.787][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:54.788][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:54.790][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.794][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.799][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:54.804][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:54.805][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:54.806][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:54.813][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:54.814][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:54.815][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:54.816][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:54.817][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.822][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.827][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:54.832][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:54.833][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:54.834][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:54.840][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:54.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:54.843][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:54.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:54.845][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.850][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.855][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:54.860][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:54.861][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:54.862][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:54.868][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:54.870][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:54.871][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:54.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:54.873][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.878][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.883][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:54.888][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:05:54.890][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:54.891][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:54.892][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:54.898][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:54.900][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:54.901][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:54.902][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:54.903][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.908][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.913][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:54.914][private$selectFields]
biodb.TRACE[2024-12-07 16:05:54.915][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:05:54.917][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:05:54.918][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:54.919][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.920][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.921][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.923][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.924][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.925][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.927][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.929][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:54.930][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:54.931][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.932][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.935][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.936][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:05:54.937][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.942][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.947][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.952][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [2535].
biodb.DEBUG[2024-12-07 16:05:54.954][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:54.955][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:54.956][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:54.962][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:54.963][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:54.965][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:54.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:54.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.972][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.977][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:54.978][private$selectFields]
biodb.TRACE[2024-12-07 16:05:54.979][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:05:54.981][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:05:54.982][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:54.983][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.984][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.987][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.988][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.989][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:54.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.992][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.001][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:55.002][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:55.003][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.005][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.007][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.009][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:05:55.010][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.015][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.020][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.025][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-12-07 16:05:55.027][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:55.028][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:55.029][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:55.035][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:55.036][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:55.037][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:55.039][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:55.040][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.045][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.050][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:55.051][private$selectFields]
biodb.TRACE[2024-12-07 16:05:55.052][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:05:55.053][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:05:55.054][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:55.056][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.057][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.058][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.059][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.060][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.062][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.064][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.065][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:55.066][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:55.068][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.069][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.071][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.072][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:05:55.074][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.078][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.083][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.089][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2024-12-07 16:05:55.090][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:05:55.091][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:05:55.094][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:55.095][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:55.096][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:55.102][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:55.104][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:55.105][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:55.106][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:55.109][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:05:55.114][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:05:55.115][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7b0416ab2d5cbf869f248000c039a8e8".
biodb.TRACE[2024-12-07 16:05:55.117][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:05:55.119][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7b0416ab2d5cbf869f248000c039a8e8.content".
biodb.DEBUG[2024-12-07 16:05:55.122][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:55.123][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:55.124][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:55.130][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:55.132][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:55.133][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:55.134][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:55.135][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.140][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.145][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:55.150][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:55.151][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:55.152][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:55.158][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:55.159][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:55.160][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:55.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:55.163][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.168][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.173][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:55.177][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:55.179][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:55.180][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:55.186][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:55.187][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:55.188][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:55.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:55.190][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.195][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.200][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:55.205][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:55.206][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:55.207][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:55.213][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:55.214][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:55.216][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:55.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:55.218][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.223][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.228][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:55.233][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:55.234][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:55.235][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:55.241][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:55.242][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:55.243][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:55.244][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:55.246][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.251][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.256][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:55.261][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:05:55.263][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:55.264][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:55.265][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:55.271][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:55.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:55.273][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:55.274][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:55.276][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.281][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.286][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:55.287][private$selectFields]
biodb.TRACE[2024-12-07 16:05:55.288][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:05:55.289][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:05:55.290][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:55.291][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.293][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.295][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.296][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.298][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.300][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.301][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:55.302][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:55.304][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.305][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.306][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.307][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.308][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:05:55.310][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.315][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.319][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.325][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [31303].
biodb.DEBUG[2024-12-07 16:05:55.326][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:55.327][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:55.328][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:55.334][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:55.336][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:55.337][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:55.338][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:55.339][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.344][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.349][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:55.350][private$selectFields]
biodb.TRACE[2024-12-07 16:05:55.351][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:05:55.352][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:05:55.354][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:55.355][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.356][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.359][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.360][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.361][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.362][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.363][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.365][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:55.366][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:55.367][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.368][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.371][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.372][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:05:55.373][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.378][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.383][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.388][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [81767].
biodb.DEBUG[2024-12-07 16:05:55.389][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:55.391][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:55.392][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:55.398][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:55.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:55.408][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:55.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:55.411][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.416][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.421][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:55.422][private$selectFields]
biodb.TRACE[2024-12-07 16:05:55.423][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:05:55.425][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:05:55.426][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:55.427][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.428][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.431][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.432][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.433][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.435][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.436][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.437][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:55.438][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:55.439][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.441][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.443][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.444][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:05:55.446][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.451][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.455][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.461][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [131378].
biodb.DEBUG[2024-12-07 16:05:55.462][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:05:55.463][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:05:55.490][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:55.491][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:55.492][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:55.499][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:55.500][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:55.501][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:55.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:55.506][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:05:55.510][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:05:55.512][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-12-07 16:05:55.514][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:05:55.516][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-12-07 16:05:55.520][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:05:55.524][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:05:55.526][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-12-07 16:05:55.527][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:05:55.529][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-12-07 16:05:55.532][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:55.534][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:55.535][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:55.541][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:55.543][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:55.544][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:55.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:55.546][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.552][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.557][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:55.562][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:55.563][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:55.564][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:55.571][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:55.572][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:55.573][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:55.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:55.576][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.581][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.586][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:55.591][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:55.592][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:55.593][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:55.599][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:55.601][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:55.602][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:55.603][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:55.604][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.609][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.614][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:55.620][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:05:55.622][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:55.623][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:55.624][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:55.630][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:55.632][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:55.633][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:55.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:55.635][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.640][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.645][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:55.646][private$selectFields]
biodb.TRACE[2024-12-07 16:05:55.648][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:05:55.649][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:05:55.650][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:55.651][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.652][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.654][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.655][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.656][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.657][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.660][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.661][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:55.662][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:55.663][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.665][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.666][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.667][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.668][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:05:55.669][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.674][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.679][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.685][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-12-07 16:05:55.686][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:55.687][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:55.688][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:55.694][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:55.695][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:55.697][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:55.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:55.699][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.704][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.709][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:55.710][private$selectFields]
biodb.TRACE[2024-12-07 16:05:55.711][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:05:55.712][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:05:55.714][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:55.715][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.716][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.718][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.720][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.721][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.723][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.725][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:55.726][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:55.727][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.728][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.729][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.731][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.732][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:05:55.733][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.738][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.743][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.748][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-12-07 16:05:55.750][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:55.751][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:55.752][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:55.758][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:55.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:55.760][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:55.761][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:55.763][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.768][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.773][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:55.774][private$selectFields]
biodb.TRACE[2024-12-07 16:05:55.775][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:05:55.776][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:05:55.778][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:55.779][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.780][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.783][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.784][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.785][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.787][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.789][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:55.790][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:55.791][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.792][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.794][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.795][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.796][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:05:55.797][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.803][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.808][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.813][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-12-07 16:05:55.815][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:05:55.816][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:05:55.826][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:55.828][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:55.829][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:55.836][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:55.837][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:55.838][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:55.839][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:55.843][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:05:55.847][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:05:55.849][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2024-12-07 16:05:55.851][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:05:55.852][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2024-12-07 16:05:55.856][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:55.857][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:55.858][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:55.864][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:55.865][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:55.867][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:55.868][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:55.869][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.874][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.879][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:55.884][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:55.885][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:55.886][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:55.892][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:55.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:55.895][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:55.896][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:55.897][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.902][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.907][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:55.912][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:55.913][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:55.914][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:55.920][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:55.921][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:55.922][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:55.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:55.925][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.930][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.935][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:55.940][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:05:55.942][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:55.943][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:55.944][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:55.950][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:55.951][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:55.953][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:55.954][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:55.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.960][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.965][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:55.966][private$selectFields]
biodb.TRACE[2024-12-07 16:05:55.967][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:05:55.968][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:05:55.970][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:55.971][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.972][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.975][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.976][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.977][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.980][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.981][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:55.982][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:55.983][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.985][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.987][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.988][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:05:55.989][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.994][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.999][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.005][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-12-07 16:05:56.007][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:56.008][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:56.009][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:56.016][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:56.017][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:56.018][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:56.019][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:56.021][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.026][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.031][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:56.032][private$selectFields]
biodb.TRACE[2024-12-07 16:05:56.033][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:05:56.034][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:05:56.036][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:56.037][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.038][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.041][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.042][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.043][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.046][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.048][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:56.049][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:56.050][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.052][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.054][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.056][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:05:56.057][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.062][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.067][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.073][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2024-12-07 16:05:56.074][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:56.075][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:56.076][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:56.083][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:56.084][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:56.085][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:56.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:56.088][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.093][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.098][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:56.099][private$selectFields]
biodb.TRACE[2024-12-07 16:05:56.100][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:05:56.101][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:05:56.103][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:56.104][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.105][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.106][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.108][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.109][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.110][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.113][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.114][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:56.115][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:56.116][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.118][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.119][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.120][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.121][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:05:56.123][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.128][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.138][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2024-12-07 16:05:56.139][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:05:56.140][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:05:56.143][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:56.144][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:56.145][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:56.151][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:56.152][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:56.153][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:56.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:56.158][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:05:56.162][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:05:56.164][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2024-12-07 16:05:56.165][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:05:56.167][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2024-12-07 16:05:56.171][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:56.172][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:56.173][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:56.179][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:56.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:56.182][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:56.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:56.184][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.189][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.194][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:56.199][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:56.200][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:56.202][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:56.208][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:56.209][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:56.210][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:56.212][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:56.213][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.218][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.223][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:56.229][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:56.230][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:56.231][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:56.245][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:56.246][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:56.248][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:56.249][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:56.250][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.255][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.260][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:56.266][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:05:56.268][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:56.269][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:56.270][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:56.276][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:56.277][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:56.278][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:56.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:56.281][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.286][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.290][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:56.292][private$selectFields]
biodb.TRACE[2024-12-07 16:05:56.293][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:05:56.294][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:05:56.295][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:56.296][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.298][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.300][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.301][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.302][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.304][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.305][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.306][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:56.307][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:56.308][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.310][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.311][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.312][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.313][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:05:56.314][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.319][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.324][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.330][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2024-12-07 16:05:56.331][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:56.332][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:56.333][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:56.339][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:56.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:56.342][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:56.343][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:56.344][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.349][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.354][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:56.355][private$selectFields]
biodb.TRACE[2024-12-07 16:05:56.356][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:05:56.357][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:05:56.359][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:56.360][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.361][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.362][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.364][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.365][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.366][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.367][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.368][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.370][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:56.371][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:56.372][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.373][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.375][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.376][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.377][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:05:56.378][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.383][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.388][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.393][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2024-12-07 16:05:56.395][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:56.396][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:56.397][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:56.403][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:56.404][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:56.405][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:56.406][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:56.408][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.413][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.418][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:56.419][private$selectFields]
biodb.TRACE[2024-12-07 16:05:56.420][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:05:56.421][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:05:56.422][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:56.424][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.425][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.427][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.429][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.430][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.432][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.434][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:56.435][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:56.436][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.437][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.438][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.440][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.441][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:05:56.442][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.447][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.452][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.457][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2024-12-07 16:05:56.458][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:05:56.460][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:05:56.486][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:56.487][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:56.488][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:56.495][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:56.496][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:56.497][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:56.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:56.501][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:05:56.506][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:05:56.507][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26eec570aadd234892b573eb0777bd78".
biodb.TRACE[2024-12-07 16:05:56.509][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:05:56.511][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26eec570aadd234892b573eb0777bd78.content".
biodb.DEBUG[2024-12-07 16:05:56.515][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:56.516][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:56.517][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:56.524][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:56.525][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:56.526][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:56.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:56.529][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.534][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.539][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:56.544][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:56.545][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:56.547][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:56.553][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:56.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:56.555][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:56.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:56.558][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.563][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.568][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:56.573][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:56.574][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:56.575][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:56.582][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:56.583][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:56.584][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:56.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:56.587][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.592][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.598][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:56.603][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:56.604][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:56.605][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:56.612][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:56.613][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:56.614][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:56.615][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:56.617][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.622][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.627][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:56.633][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:56.634][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:56.635][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:56.641][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:56.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:56.644][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:56.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:56.647][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.652][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.665][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:56.670][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:56.671][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:56.672][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:56.679][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:56.680][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:56.681][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:56.682][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:56.684][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.689][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.694][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:56.699][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:56.700][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:56.701][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:56.708][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:56.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:56.710][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:56.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:56.713][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.718][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.723][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:56.728][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:56.729][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:56.730][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:56.736][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:56.737][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:56.738][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:56.739][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:56.741][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.746][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.751][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:56.756][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:05:56.758][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:56.759][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:56.760][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:56.766][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:56.767][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:56.768][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:56.769][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:56.771][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.775][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.780][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:56.782][private$selectFields]
biodb.TRACE[2024-12-07 16:05:56.783][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:05:56.784][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:05:56.785][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:56.786][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.788][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.789][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.790][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.791][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.793][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.794][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.795][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.796][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:56.797][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:56.798][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.800][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.802][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.803][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:05:56.805][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.810][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.815][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.821][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-12-07 16:05:56.822][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:56.823][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:56.824][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:56.830][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:56.832][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:56.833][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:56.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:56.836][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.841][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.846][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:56.847][private$selectFields]
biodb.TRACE[2024-12-07 16:05:56.848][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:05:56.849][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:05:56.851][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:56.852][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.853][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.856][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.857][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.858][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.860][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.861][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.862][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:56.863][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:56.865][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.866][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.867][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.868][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.870][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:05:56.871][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.877][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.882][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.887][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-12-07 16:05:56.888][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:56.889][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:56.890][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:56.897][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:56.898][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:56.899][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:56.900][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:56.902][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.907][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.912][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:56.913][private$selectFields]
biodb.TRACE[2024-12-07 16:05:56.914][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:05:56.915][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:05:56.916][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:56.918][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.919][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.921][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.923][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.924][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.926][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.928][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:56.929][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:56.930][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.931][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.932][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.934][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.935][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:05:56.936][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.941][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.946][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.952][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-12-07 16:05:56.953][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:05:56.954][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:05:56.956][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:56.958][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:56.959][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:56.965][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:56.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:56.967][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:56.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:56.972][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:05:56.976][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:05:56.977][cch$loadFileContent] Trying to load 1 files from cache: [1]: "20c224089a82bbffabd2e7dbc67cfae3".
biodb.TRACE[2024-12-07 16:05:56.979][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:05:56.981][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/20c224089a82bbffabd2e7dbc67cfae3.content".
biodb.DEBUG[2024-12-07 16:05:56.990][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:56.992][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:56.993][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:56.999][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:57.000][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:57.001][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:57.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:57.004][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.009][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.014][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:57.019][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:57.020][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:57.021][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:57.028][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:57.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:57.030][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:57.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:57.033][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.038][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.042][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:57.048][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:57.049][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:57.050][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:57.056][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:57.057][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:57.058][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:57.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:57.061][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.073][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.079][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:57.085][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:57.086][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:57.087][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:57.093][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:57.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:57.095][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:57.097][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:57.098][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.103][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.108][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:57.113][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:57.114][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:57.115][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:57.121][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:57.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:57.124][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:57.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:57.126][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.131][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.137][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:57.142][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:57.143][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:57.144][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:57.150][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:57.152][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:57.153][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:57.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:57.155][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.160][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.165][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:57.171][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:57.172][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:57.173][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:57.179][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:57.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:57.182][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:57.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:57.184][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.189][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.194][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:57.199][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:57.200][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:57.202][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:57.208][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:57.209][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:57.211][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:57.212][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:57.213][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.218][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.223][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:57.228][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:57.230][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:57.231][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:57.237][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:57.239][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:57.240][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:57.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:57.242][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.247][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.252][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:57.257][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:57.259][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:57.260][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:57.266][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:57.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:57.269][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:57.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:57.271][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.282][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:57.287][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:57.288][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:57.289][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:57.295][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:57.297][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:57.298][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:57.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:57.300][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.306][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.311][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:57.316][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:57.317][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:57.318][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:57.325][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:57.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:57.327][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:57.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:57.330][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.335][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.340][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:57.345][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:57.346][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:57.347][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:57.354][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:57.355][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:57.356][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:57.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:57.359][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.364][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.369][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:57.374][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:57.375][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:57.376][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:57.382][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:57.384][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:57.385][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:57.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:57.388][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.393][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.398][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:57.403][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:57.404][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:57.405][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:57.412][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:57.413][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:57.414][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:57.415][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:57.417][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.422][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.427][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:57.432][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:57.433][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:57.434][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:57.440][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:57.442][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:57.443][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:57.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:57.446][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.451][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.456][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:57.461][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:57.462][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:57.463][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:57.470][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:57.471][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:57.472][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:57.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:57.475][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.481][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.486][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:57.498][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:57.500][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:57.501][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:57.507][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:57.509][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:57.510][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:57.511][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:57.513][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.518][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.523][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:57.528][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:57.529][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:57.530][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:57.536][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:57.538][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:57.539][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:57.540][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:57.541][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.546][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.551][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:57.556][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:57.557][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:57.558][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:57.565][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:57.566][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:57.567][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:57.568][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:57.570][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.575][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.580][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:57.585][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:57.586][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:57.587][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:57.593][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:57.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:57.596][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:57.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:57.598][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.603][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.608][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:57.613][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:57.615][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:57.616][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:57.622][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:57.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:57.624][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:57.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:57.627][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.632][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.637][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:57.642][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:57.643][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:57.644][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:57.651][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:57.652][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:57.653][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:57.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:57.656][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.661][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.666][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:57.671][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:57.672][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:57.673][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:57.680][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:57.681][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:57.682][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:57.683][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:57.685][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.690][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.695][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:57.700][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:57.701][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:57.702][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:57.709][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:57.710][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:57.711][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:57.712][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:57.714][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.719][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.724][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:57.730][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:57.731][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:57.732][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:57.738][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:57.739][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:57.740][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:57.741][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:57.743][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.748][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.753][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:57.758][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:57.759][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:57.760][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:57.767][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:57.768][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:57.769][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:57.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:57.771][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.776][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.781][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:57.786][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:57.787][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:57.789][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:57.795][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:57.796][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:57.797][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:57.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:57.800][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.804][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.809][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:57.814][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:57.815][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:57.817][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:57.823][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:57.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:57.825][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:57.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:57.828][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.833][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.838][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:57.842][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:57.844][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:57.845][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:57.851][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:57.852][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:57.853][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:57.854][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:57.856][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.861][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.866][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:57.871][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:05:57.873][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:57.874][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:57.875][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:57.881][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:57.882][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:57.883][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:57.885][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:57.886][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:57.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:57.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.891][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:57.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:57.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.896][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:57.897][private$selectFields]
biodb.TRACE[2024-12-07 16:05:57.898][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:05:57.900][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:05:57.901][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:57.902][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:57.903][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:57.904][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.913][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.914][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:57.916][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:57.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.919][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.920][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:57.921][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:57.922][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:57.924][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:57.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.926][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.927][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:05:57.929][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:57.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:57.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.934][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:57.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:57.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.939][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:57.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:57.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.944][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-12-07 16:05:57.946][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:57.947][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:57.948][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:57.954][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:57.955][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:57.956][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:57.957][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:57.959][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:57.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:57.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.964][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:57.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:57.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.969][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:57.970][private$selectFields]
biodb.TRACE[2024-12-07 16:05:57.971][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:05:57.972][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:05:57.973][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:57.975][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:57.976][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:57.977][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.978][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.980][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:57.981][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:57.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.983][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.984][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:57.986][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:57.987][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:57.988][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:57.989][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.990][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.992][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:05:57.993][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:57.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:57.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.998][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:57.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.003][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.008][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2024-12-07 16:05:58.010][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:58.011][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:58.012][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:58.018][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:58.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:58.020][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:58.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:58.023][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.028][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.033][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:58.034][private$selectFields]
biodb.TRACE[2024-12-07 16:05:58.035][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:05:58.036][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:05:58.038][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:58.039][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.040][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.041][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.043][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.044][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.045][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.046][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.047][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.049][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:58.050][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:58.051][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.052][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.055][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.056][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:05:58.057][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.062][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.067][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.073][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2024-12-07 16:05:58.074][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:05:58.075][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:05:58.077][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:58.079][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:58.080][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:58.086][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:58.087][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:58.088][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:58.089][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:58.093][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:05:58.097][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:05:58.099][cch$loadFileContent] Trying to load 1 files from cache: [1]: "a035d13a630066423fab6713592c5e52".
biodb.TRACE[2024-12-07 16:05:58.100][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:05:58.102][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.content".
biodb.DEBUG[2024-12-07 16:05:58.110][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:58.111][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:58.112][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:58.118][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:58.119][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:58.121][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:58.122][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:58.123][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:58.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:58.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.128][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:58.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:58.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.133][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:58.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:58.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:58.138][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:58.139][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:58.140][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:58.147][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:58.148][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:58.149][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:58.150][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:58.151][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:58.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:58.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.156][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:58.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:58.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.161][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:58.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:58.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:58.166][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:58.167][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:58.168][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:58.175][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:58.176][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:58.177][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:58.178][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:58.180][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:58.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:58.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.185][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:58.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:58.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.189][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:58.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:58.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:58.194][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:58.196][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:58.197][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:58.203][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:58.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:58.205][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:58.206][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:58.208][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:58.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:58.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.213][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:58.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:58.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.218][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:58.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:58.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:58.223][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:05:58.225][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:58.226][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:58.227][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:58.233][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:58.235][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:58.236][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:58.237][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:58.238][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.244][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.249][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:58.250][private$selectFields]
biodb.TRACE[2024-12-07 16:05:58.251][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:05:58.252][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:05:58.253][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:58.255][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.256][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.257][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.258][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.260][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.261][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.263][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.265][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:58.266][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:58.267][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.269][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.270][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.271][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.272][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:05:58.273][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.284][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.289][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2024-12-07 16:05:58.291][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:58.292][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:58.293][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:58.299][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:58.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:58.302][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:58.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:58.304][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.309][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.322][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:58.324][private$selectFields]
biodb.TRACE[2024-12-07 16:05:58.325][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:05:58.327][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:05:58.328][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:58.329][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.331][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.333][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.334][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.336][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.338][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.340][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:58.341][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:58.342][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.343][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.346][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.347][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:05:58.348][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.353][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.359][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.364][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2024-12-07 16:05:58.365][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:58.366][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:58.367][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:58.374][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:58.375][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:58.376][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:58.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:58.379][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.384][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.389][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:58.390][private$selectFields]
biodb.TRACE[2024-12-07 16:05:58.391][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:05:58.392][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:05:58.394][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:58.395][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.396][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.397][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.399][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.400][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.401][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.402][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.404][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.405][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:58.406][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:58.407][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.409][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.410][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.411][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.412][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:05:58.413][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.418][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.423][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.429][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-12-07 16:05:58.430][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:05:58.431][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-12-07 16:05:58.454][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-12-07 16:05:58.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-12-07 16:05:58.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.459][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-12-07 16:05:58.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-12-07 16:05:58.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.464][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-12-07 16:05:58.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-12-07 16:05:58.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-12-07 16:05:58.474][biodb::testThat]
biodb.INFO [2024-12-07 16:05:58.475][biodb::testThat] Running test function test_annotateMzValues_additional_fields (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2024-12-07 16:05:58.476][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:05:58.477][biodb::testThat]
biodb.TRACE[2024-12-07 16:05:58.481][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-07 16:05:58.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-07 16:05:58.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.486][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-07 16:05:58.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-07 16:05:58.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.491][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-07 16:05:58.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-07 16:05:58.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.496][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:58.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:58.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.501][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:58.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:58.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.506][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:58.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:58.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.512][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:58.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:58.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.517][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:58.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:58.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.522][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:58.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:58.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.527][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:58.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:58.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.532][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:58.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:58.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.537][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:58.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:58.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.542][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:58.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:58.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.547][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:58.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:58.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.552][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:58.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:58.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:58.560][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:58.561][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:58.563][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:58.569][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:58.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:58.571][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:58.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:58.576][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:05:58.580][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:05:58.581][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-12-07 16:05:58.583][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:05:58.585][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-12-07 16:05:58.587][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:58.588][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:58.589][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:58.596][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:58.597][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:58.598][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:58.599][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:58.601][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:58.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:58.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.606][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:58.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:58.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.611][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:58.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:58.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:58.617][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:05:58.621][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:05:58.622][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-12-07 16:05:58.624][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:05:58.626][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-12-07 16:05:58.629][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:58.630][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:58.631][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:58.637][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:58.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:58.640][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:58.641][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:58.642][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:58.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:58.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.647][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:58.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:58.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.652][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:58.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:58.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:58.657][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:58.658][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:58.660][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:58.666][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:58.667][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:58.668][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:58.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:58.671][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:58.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:58.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.676][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:58.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:58.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.681][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:58.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:58.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:58.687][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:05:58.689][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:58.690][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:58.691][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:58.698][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:58.699][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:58.700][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:58.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:58.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:58.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:58.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:58.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:58.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.713][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:58.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:58.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.718][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:58.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:58.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.723][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.728][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.741][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:58.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:58.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.747][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:58.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:58.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.752][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:58.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:58.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.757][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:58.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:58.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.762][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:58.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:58.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.768][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:58.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:58.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.773][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:58.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:58.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.778][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:58.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:58.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.783][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:58.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:58.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.788][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:58.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:58.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.793][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:58.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:58.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.798][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:58.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:58.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.803][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:05:58.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:58.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.808][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:05:58.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:58.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.813][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:58.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:58.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.818][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:58.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:58.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.823][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:58.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:58.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.828][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:58.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:58.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.833][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:05:58.834][private$selectFields]
biodb.TRACE[2024-12-07 16:05:58.835][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:05:58.836][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:05:58.838][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:05:58.839][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:58.840][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:58.842][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.843][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.844][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:58.845][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:58.846][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.848][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.849][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.850][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.851][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.853][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.854][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:58.855][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:58.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.858][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.859][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:58.860][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:58.862][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.863][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.864][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:58.865][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:58.867][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.868][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.869][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:58.870][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:58.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.873][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.874][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:58.875][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:58.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.878][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.879][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:58.880][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:58.882][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.883][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.884][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:05:58.885][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:58.887][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.888][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.889][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:58.890][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:58.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.893][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.894][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:58.895][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:58.897][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.898][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.899][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:58.900][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:58.902][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.903][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.904][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:58.905][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:58.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.908][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.909][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.911][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.912][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.913][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.914][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:58.916][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:58.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.918][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.919][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:58.921][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:58.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.923][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.924][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:58.926][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:58.927][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.928][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.929][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:58.931][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:58.932][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.933][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.934][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:58.935][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:58.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.938][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.939][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:58.940][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:58.942][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.943][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.944][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:05:58.945][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:58.947][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.948][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.949][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:58.950][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:58.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.953][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.954][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:58.955][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:58.957][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.958][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.959][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:05:58.960][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:05:58.961][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:58.963][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:58.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.965][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.966][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:58.968][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:58.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.970][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.972][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.973][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.975][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.977][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:58.978][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:58.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.980][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.982][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:58.983][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:58.984][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.986][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.987][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:58.988][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:58.989][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.991][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.992][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:58.993][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:58.994][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.996][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.997][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:58.998][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:59.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.001][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.002][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:05:59.003][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:59.005][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.006][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.007][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:59.008][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:59.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.011][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.012][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:59.013][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:59.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.016][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.017][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:05:59.018][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:59.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:59.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:59.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:59.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:59.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:59.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.034][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:59.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:59.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.040][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:59.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:59.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.045][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:59.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:59.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.050][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.055][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.060][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.066][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:59.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:59.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.071][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:59.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:59.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.076][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:59.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:59.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.081][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:59.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:59.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.086][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:59.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:59.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.091][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:59.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:59.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.097][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:59.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:59.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.102][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:59.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:59.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.108][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:59.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:59.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.114][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:59.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:59.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.119][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:59.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:59.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.124][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:59.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:59.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.130][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:59.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:59.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.136][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:59.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:59.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.324][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:59.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:59.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.329][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:05:59.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:59.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.334][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:05:59.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:59.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.339][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:05:59.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:59.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.344][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:59.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:59.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.349][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:59.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:59.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.354][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:59.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:59.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.359][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:59.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:59.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.364][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:59.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:59.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.369][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:59.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:59.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.383][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [192288, 0, 192288, C27H54O2, InChI=1S/C27H54O2/c1-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-24-25-26-27(28)29-2/h3-26H2,1-2H3, ...].
biodb.DEBUG[2024-12-07 16:05:59.384][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:59.385][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:59.386][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:59.393][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:59.394][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:59.395][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:59.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:59.397][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:59.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:59.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:59.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:59.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.407][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:59.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:59.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.412][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:59.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:59.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.417][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.422][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.427][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:59.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:59.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.432][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:59.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:59.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.437][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:59.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:59.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.442][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:59.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:59.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.447][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:59.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:59.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.452][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:59.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:59.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.457][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:59.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:59.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.461][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:59.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:59.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.466][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:59.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:59.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.471][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:59.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:59.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.476][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:59.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:59.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.481][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:59.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:59.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.486][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:05:59.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:59.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.491][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:05:59.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:59.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.495][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:59.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:59.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.501][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:59.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:59.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.506][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:59.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:59.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.511][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:59.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:59.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.516][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:05:59.517][private$selectFields]
biodb.TRACE[2024-12-07 16:05:59.518][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:05:59.519][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:05:59.520][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:05:59.522][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:59.523][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:59.524][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.525][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.526][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:59.528][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:59.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.530][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.531][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.533][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.534][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.535][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.537][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:59.538][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:59.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.540][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.542][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:59.543][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:59.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.545][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.546][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:59.548][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:59.549][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.550][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.551][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:59.553][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:59.554][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.555][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.556][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:59.558][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:59.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.560][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.561][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:59.562][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:59.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.565][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.566][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:05:59.567][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:59.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.570][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.571][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:59.573][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:59.574][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.575][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.576][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:59.578][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:59.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.580][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.581][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:59.583][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:59.584][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.585][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.586][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:59.588][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:59.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.590][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.591][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.593][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.594][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.595][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.596][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:59.597][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:59.599][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.600][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.601][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:59.602][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:59.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.605][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.606][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:59.607][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:59.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.610][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.611][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:59.612][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:59.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.615][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.616][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:59.617][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:59.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.620][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.621][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:59.622][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:59.624][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.625][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.626][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:05:59.627][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:59.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.630][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.631][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:59.632][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:59.634][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.635][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.636][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:59.637][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:59.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.640][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.641][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:05:59.642][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:05:59.644][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:59.645][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:59.646][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.647][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.649][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:59.650][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:59.651][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.652][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.654][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.655][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.657][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.659][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:59.660][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:59.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.662][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.664][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:59.665][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:59.666][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.667][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.668][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:59.670][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:59.671][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.672][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.673][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:59.675][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:59.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.677][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.678][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:59.680][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:59.681][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.682][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.683][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:59.685][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:59.686][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.687][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.689][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:05:59.690][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:59.692][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.693][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.694][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:59.696][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:59.698][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.699][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.700][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:59.702][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:59.703][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.705][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.706][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:05:59.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:59.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:59.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:59.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:59.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.720][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:59.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:59.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.726][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:59.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:59.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.732][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:59.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:59.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.738][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:59.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:59.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.748][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.753][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.758][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.763][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:59.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:59.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.768][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:59.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:59.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.773][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:59.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:59.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.778][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:59.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:59.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.783][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:59.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:59.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.788][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:59.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:59.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.793][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:59.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:59.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.798][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:59.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:59.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.803][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:59.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:59.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.808][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:59.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:59.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.813][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:59.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:59.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.818][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:59.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:59.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.823][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:59.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:59.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.828][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:59.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:59.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.833][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:59.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:59.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.838][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:59.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:59.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.843][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:59.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:59.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.848][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:59.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:59.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.853][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:05:59.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:59.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.858][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:05:59.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:59.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.863][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:05:59.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:59.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.868][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:59.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:59.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.873][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:59.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:59.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.878][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:59.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:59.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.884][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:59.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:59.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.889][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:59.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:59.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.894][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:59.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:59.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.907][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2024-12-07 16:05:59.908][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:59.909][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:59.910][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:59.917][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:59.918][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:59.919][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:59.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:59.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:59.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:59.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:59.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:59.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.932][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:59.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:59.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.937][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:59.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:59.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.942][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.947][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.952][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:59.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:59.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.957][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:59.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:59.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.962][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:59.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:59.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.967][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:59.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:59.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.972][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:59.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:59.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.977][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:59.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:59.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.982][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:59.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:59.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.987][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:59.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:59.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.992][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:59.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:59.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.997][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:59.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:59.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.002][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:00.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:00.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.007][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:00.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:00.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.012][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:00.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:00.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.017][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:00.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:00.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.022][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:00.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:00.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.027][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:00.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:00.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.032][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:00.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:00.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.037][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:00.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:00.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.042][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:00.043][private$selectFields]
biodb.TRACE[2024-12-07 16:06:00.044][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:00.045][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:00.047][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:00.048][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:00.049][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:00.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.051][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.053][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:00.054][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:00.055][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.056][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.058][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:00.059][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:00.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.061][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.063][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:00.064][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:00.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.066][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.067][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:00.069][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:00.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.071][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.072][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:00.074][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:00.075][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.076][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.077][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:00.079][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:00.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.081][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.082][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:00.084][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:00.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.086][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.087][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:00.089][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:00.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.091][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.092][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:00.093][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:00.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.096][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.097][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:00.098][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:00.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.101][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.102][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:00.103][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:00.105][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.106][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.107][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:00.108][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:00.109][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.111][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.112][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:00.113][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:00.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.116][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.117][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:00.118][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:00.119][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.121][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.122][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:00.123][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:00.124][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.126][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.127][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:00.128][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:00.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.131][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.132][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:00.133][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:00.134][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.136][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.137][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:00.138][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:00.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.141][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.142][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:00.143][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:00.144][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.146][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.147][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:00.148][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:00.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.151][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.152][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:00.153][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:00.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.156][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.157][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:00.163][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:00.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.165][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.166][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:00.168][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:00.169][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.170][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.172][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:06:00.173][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:06:00.174][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:00.175][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:00.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.178][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.179][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:00.180][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:00.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.183][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.184][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:00.185][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:00.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.188][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.189][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:00.190][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:00.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.193][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.194][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:00.195][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:00.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.197][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.199][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:00.200][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:00.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.202][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.203][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:00.205][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:00.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.207][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.208][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:00.210][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:00.211][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.212][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.213][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:00.214][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:00.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.217][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.218][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:00.219][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:00.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.222][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.223][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:00.224][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:00.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.226][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.228][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:06:00.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:00.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:00.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.234][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:00.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:00.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:00.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:00.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.244][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:00.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:00.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.249][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:00.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:00.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.254][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:00.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:00.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.259][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:00.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:00.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.264][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:00.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:00.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.269][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:00.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:00.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.274][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:00.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:00.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.279][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:00.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:00.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.284][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:00.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:00.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.289][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:00.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:00.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.294][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:00.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:00.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.299][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:00.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:00.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.304][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:00.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:00.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.309][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:00.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:00.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.314][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:00.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:00.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.319][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:00.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:00.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.324][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:00.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:00.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.329][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:00.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:00.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.334][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:00.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:00.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.339][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:00.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:00.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.344][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:00.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:00.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.349][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:00.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:00.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.354][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:00.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:00.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.359][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:00.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:00.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.364][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:00.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:00.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.369][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:00.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:00.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.374][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:00.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:00.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.379][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:00.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:00.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.384][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:00.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:00.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.389][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:00.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:00.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.402][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [209892, 0, 209892, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-30(8)25-13-14-26-27(4,5)17-10-18-28(26,6)24(25)16-20-29(23,30)7/h11,13,22-24,26H,9-10,12,14-20H2,1-8H3/t22-,23+,24+,26+,28-,29+,30-/m1/s1, ...].
biodb.DEBUG[2024-12-07 16:06:00.403][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:06:00.404][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:06:00.409][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:00.410][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:00.411][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:00.418][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:00.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:00.420][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:00.421][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:00.425][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:06:00.429][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:06:00.431][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2024-12-07 16:06:00.432][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:06:00.434][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2024-12-07 16:06:00.437][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:00.438][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:00.439][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:00.445][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:00.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:00.448][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:00.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:00.450][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:00.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:00.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.455][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:00.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:00.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.460][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:00.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:00.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:00.465][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:00.466][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:00.468][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:00.474][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:00.475][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:00.476][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:00.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:00.479][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:00.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:00.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.484][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:00.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:00.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.489][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:00.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:00.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:00.495][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:06:00.499][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:06:00.501][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2024-12-07 16:06:00.502][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:06:00.504][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2024-12-07 16:06:00.507][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:00.509][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:00.510][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:00.516][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:00.517][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:00.518][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:00.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:00.521][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:00.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:00.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.525][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:00.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:00.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.530][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:00.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:00.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:00.535][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:00.536][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:00.538][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:00.544][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:00.545][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:00.546][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:00.547][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:00.549][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:00.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:00.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.554][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:00.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:00.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.559][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:00.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:00.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:00.564][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:00.565][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:00.566][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:00.572][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:00.573][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:00.574][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:00.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:00.577][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:00.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:00.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.586][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:00.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:00.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.591][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:00.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:00.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:00.596][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:06:00.598][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:00.599][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:00.600][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:00.606][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:00.608][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:00.609][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:00.610][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:00.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:00.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:00.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:00.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:00.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.621][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:00.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:00.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.626][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:00.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:00.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.630][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:00.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:00.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.635][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:00.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:00.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.640][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:00.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:00.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.645][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:00.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:00.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.650][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:00.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:00.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.654][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:00.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:00.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.659][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:00.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:00.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.664][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:00.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:00.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.669][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:00.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:00.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.674][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:00.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:00.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.679][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:00.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:00.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.683][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:00.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:00.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.688][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:00.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:00.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.693][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:00.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:00.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.698][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:00.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:00.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.703][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:00.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:00.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.708][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:00.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:00.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.713][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:00.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:00.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.718][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:00.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:00.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.723][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:00.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:00.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.728][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:00.729][private$selectFields]
biodb.TRACE[2024-12-07 16:06:00.730][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:00.731][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:00.733][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:00.734][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:00.735][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:00.736][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.738][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.739][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:00.740][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:00.741][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.742][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.744][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:00.745][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:00.746][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.747][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.749][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:00.750][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:00.751][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.752][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.754][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:00.755][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:00.756][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.757][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.758][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:00.760][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:00.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.762][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.763][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:00.765][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:00.766][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.767][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.768][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:00.770][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:00.771][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.772][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.774][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:00.775][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:00.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.777][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.778][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:00.780][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:00.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.782][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.783][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:00.785][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:00.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.787][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.788][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:00.790][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:00.791][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.792][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.793][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:00.795][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:00.796][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.797][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.798][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:00.800][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:00.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.802][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.803][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:00.805][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:00.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.807][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.808][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:00.810][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:00.811][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.812][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.813][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:00.814][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:00.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.817][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.818][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:00.819][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:00.821][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.822][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.823][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:00.824][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:00.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.827][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.828][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:00.829][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:00.830][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.832][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.833][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:00.834][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:00.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.837][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.838][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:00.839][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:00.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.842][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.843][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:00.844][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:00.845][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.846][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.848][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:00.849][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:00.850][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.851][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.853][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:00.854][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:00.855][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:00.856][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:00.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.859][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.860][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:00.861][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:00.862][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.864][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.865][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:00.866][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:00.867][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.869][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.870][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:00.871][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:00.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.873][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.875][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:00.876][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:00.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.878][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.880][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:00.881][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:00.882][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.883][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.884][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:00.886][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:00.887][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.888][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.889][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:00.891][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:00.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.893][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.894][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:00.896][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:00.897][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.898][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.899][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:00.901][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:00.902][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.903][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.904][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:00.906][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:00.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.908][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.909][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:00.911][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:00.912][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.913][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.914][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:06:00.916][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:00.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:00.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:00.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:00.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.926][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:00.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:00.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.931][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:00.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:00.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.936][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:00.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:00.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.941][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:00.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:00.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.947][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:00.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:00.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.952][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:00.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:00.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.957][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:00.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:00.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.962][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:00.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:00.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.967][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:00.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:00.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.973][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:00.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:00.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.978][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:00.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:00.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.983][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:00.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:00.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.988][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:00.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:00.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.993][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:00.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:01.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.003][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:01.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:01.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.008][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:01.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:01.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.014][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:01.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:01.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.019][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:01.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:01.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.024][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:01.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:01.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.030][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:01.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:01.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.035][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:01.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:01.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.040][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:01.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:01.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.046][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:01.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:01.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.051][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:01.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:01.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.056][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:01.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:01.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.061][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:01.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:01.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.067][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:01.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:01.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.072][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:01.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:01.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.077][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:01.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:01.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.082][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:01.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:01.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.087][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:01.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:01.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.092][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:01.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:01.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.097][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:01.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:01.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.102][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:01.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:01.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.115][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2024-12-07 16:06:01.117][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:01.118][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:01.119][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:01.125][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:01.126][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:01.127][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:01.129][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:01.130][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:01.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:01.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:01.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:01.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.140][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:01.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:01.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.145][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:01.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:01.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.150][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:01.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:01.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.155][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:01.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:01.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.160][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:01.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:01.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.164][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:01.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:01.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.169][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:01.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:01.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.174][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:01.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:01.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.179][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:01.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:01.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.184][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:01.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:01.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.189][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:01.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:01.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.194][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:01.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:01.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.199][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:01.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:01.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.204][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:01.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:01.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.209][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:01.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:01.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.214][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:01.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:01.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.219][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:01.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:01.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.224][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:01.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:01.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.229][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:01.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:01.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.234][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:01.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:01.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.239][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:01.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:01.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.244][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:01.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:01.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.249][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:01.251][private$selectFields]
biodb.TRACE[2024-12-07 16:06:01.252][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:01.253][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:01.254][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:01.255][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:01.257][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:01.258][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.259][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.260][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:01.262][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:01.263][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.264][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.265][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:01.267][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:01.268][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.269][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.270][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:01.272][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:01.273][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.274][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.275][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:01.277][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:01.278][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.279][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.280][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:01.281][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:01.283][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.284][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.285][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:01.286][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:01.288][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.289][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.290][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:01.291][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:01.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.294][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.295][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:01.296][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:01.297][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.299][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.300][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:01.301][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:01.302][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.304][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.305][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:01.306][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:01.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.308][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.310][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:01.311][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:01.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.313][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.315][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:01.316][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:01.317][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.318][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.320][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:01.321][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:01.322][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.323][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.325][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:01.326][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:01.327][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.328][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.329][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:01.331][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:01.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.333][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.334][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:01.336][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:01.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.338][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.339][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:01.341][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:01.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.343][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.344][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:01.346][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:01.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.348][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.349][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:01.351][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:01.352][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.353][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.354][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:01.356][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:01.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.358][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.359][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:01.360][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:01.362][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.363][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.364][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:01.365][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:01.367][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.368][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.369][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:01.370][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:01.372][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.373][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.374][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:01.375][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:01.376][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:01.378][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:01.379][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.380][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.381][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:01.383][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:01.384][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.385][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.386][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:01.388][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:01.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.390][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.391][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:01.393][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:01.394][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.395][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.396][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:01.398][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:01.399][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.400][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.401][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:01.402][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:01.404][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.405][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.406][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:01.407][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:01.409][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.410][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.415][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:01.416][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:01.417][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.418][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.420][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:01.421][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:01.422][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.423][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.424][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:01.426][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:01.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.428][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.429][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:01.430][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:01.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.433][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.434][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:01.435][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:01.436][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.438][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.439][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:06:01.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:01.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:01.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:01.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:01.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:01.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:01.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.455][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:01.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:01.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.460][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:01.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:01.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.465][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:01.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:01.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.470][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:01.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:01.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.475][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:01.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:01.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.480][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:01.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:01.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.485][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:01.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:01.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.490][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:01.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:01.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.495][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:01.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:01.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.500][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:01.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:01.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.505][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:01.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:01.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.510][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:01.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:01.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.515][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:01.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:01.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.520][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:01.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:01.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.525][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:01.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:01.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.530][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:01.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:01.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.535][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:01.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:01.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.540][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:01.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:01.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.545][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:01.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:01.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.550][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:01.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:01.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.555][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:01.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:01.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.560][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:01.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:01.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.565][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:01.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:01.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.570][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:01.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:01.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.575][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:01.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:01.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.580][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:01.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:01.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.584][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:01.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:01.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.590][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:01.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:01.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.594][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:01.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:01.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.599][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:01.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:01.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.604][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:01.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:01.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.609][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:01.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:01.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.614][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:01.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:01.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.627][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [16587, 0, 16587, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)9-8-22(31)26(5,33)21-7-11-27(34)16-12-18(28)17-13-19(29)20(30)14-24(17,3)15(16)6-10-25(21,27)4/h12,15,17,19-22,29-34H,6-11,13-14H2,1-5H3/t15-,17-,19+,20-,21-,22+,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2024-12-07 16:06:01.629][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:01.630][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:01.631][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:01.637][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:01.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:01.639][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:01.640][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:01.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:01.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:01.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:01.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:01.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.652][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:01.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:01.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.656][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:01.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:01.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.661][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:01.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:01.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.666][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:01.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:01.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.671][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:01.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:01.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.676][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:01.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:01.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.681][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:01.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:01.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.686][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:01.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:01.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.691][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:01.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:01.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.696][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:01.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:01.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.701][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:01.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:01.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.706][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:01.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:01.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.710][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:01.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:01.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.715][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:01.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:01.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.720][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:01.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:01.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.725][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:01.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:01.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.730][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:01.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:01.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.735][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:01.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:01.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.740][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:01.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:01.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.745][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:01.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:01.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.750][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:01.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:01.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.755][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:01.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:01.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.760][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:01.761][private$selectFields]
biodb.TRACE[2024-12-07 16:06:01.762][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:01.763][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:01.764][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:01.766][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:01.767][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:01.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.769][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.770][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:01.772][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:01.773][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.774][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.775][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:01.777][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:01.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.779][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.780][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:01.782][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:01.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.784][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.785][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:01.787][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:01.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.789][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.790][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:01.791][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:01.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.794][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.795][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:01.796][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:01.798][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.799][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.800][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:01.801][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:01.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.804][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.805][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:01.806][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:01.807][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.809][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.810][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:01.811][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:01.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.814][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.815][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:01.816][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:01.817][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.818][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.824][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:01.825][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:01.827][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.828][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.829][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:01.830][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:01.831][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.833][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.834][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:01.835][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:01.836][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.838][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.839][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:01.840][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:01.841][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.843][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.844][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:01.845][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:01.846][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.848][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.849][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:01.850][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:01.851][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.852][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.854][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:01.855][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:01.856][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.857][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.858][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:01.860][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:01.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.862][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.863][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:01.864][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:01.866][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.867][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.868][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:01.869][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:01.870][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.872][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.873][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:01.874][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:01.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.876][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.878][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:01.879][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:01.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.881][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.883][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:01.884][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:01.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.886][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.887][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:06:01.889][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:06:01.890][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:01.891][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:01.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.893][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.895][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:01.896][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:01.897][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.898][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.900][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:01.901][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:01.902][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.903][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.905][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:01.906][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:01.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.908][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.909][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:01.911][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:01.912][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.913][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.914][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:01.916][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:01.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.918][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.919][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:01.920][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:01.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.923][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.924][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:01.925][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:01.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.928][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.929][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:01.930][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:01.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.932][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.934][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:01.935][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:01.936][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.937][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.938][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:01.940][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:01.941][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.942][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.943][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:06:01.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:01.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:01.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.950][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:01.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:01.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:01.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:01.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.960][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:01.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:01.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.964][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:01.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:01.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.969][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:01.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:01.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.974][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:01.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:01.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.979][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:01.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:01.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.984][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:01.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:01.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.989][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:01.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:01.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.994][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:01.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:01.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.999][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:02.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:02.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.004][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:02.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:02.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.009][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:02.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:02.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.014][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:02.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:02.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.019][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:02.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:02.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.024][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:02.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:02.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.029][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:02.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:02.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.034][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.039][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.044][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.049][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:02.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:02.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.054][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:02.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:02.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.059][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:02.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:02.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.065][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:02.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:02.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.070][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:02.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:02.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.075][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:02.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:02.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.080][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:02.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:02.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.085][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:02.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:02.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.089][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:02.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:02.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.095][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:02.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:02.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.100][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:02.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:02.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.105][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:02.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:02.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.117][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [19804, 0, 19804, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)8-5-9-26(33,15-28)22-7-11-27(34)17-12-19(29)18-13-20(30)21(31)14-24(18,3)16(17)6-10-25(22,27)4/h12,16,18,20-22,28,30-34H,5-11,13-15H2,1-4H3/t16-,18-,20+,21-,22-,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2024-12-07 16:06:02.118][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:06:02.120][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:06:02.124][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:02.125][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:02.126][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:02.132][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:02.133][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:02.134][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:02.135][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:02.139][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:06:02.143][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:06:02.145][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2024-12-07 16:06:02.146][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:06:02.148][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2024-12-07 16:06:02.151][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:02.152][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:02.153][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:02.160][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:02.161][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:02.162][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:02.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:02.165][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.175][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:02.180][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:02.181][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:02.182][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:02.188][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:02.190][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:02.191][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:02.192][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:02.193][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.198][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.203][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:02.208][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:02.209][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:02.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:02.217][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:02.218][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:02.219][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:02.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:02.222][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.227][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.232][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:02.241][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:02.242][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:02.243][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:02.250][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:02.251][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:02.252][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:02.253][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:02.254][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.259][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.264][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:02.269][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:02.270][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:02.271][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:02.278][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:02.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:02.280][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:02.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:02.282][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.287][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.292][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:02.297][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:02.298][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:02.300][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:02.306][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:02.307][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:02.308][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:02.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:02.310][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.315][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.320][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:02.325][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:02.326][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:02.328][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:02.334][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:02.335][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:02.336][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:02.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:02.339][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.344][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.348][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:02.353][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:02.354][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:02.356][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:02.362][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:02.363][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:02.364][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:02.365][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:02.367][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.372][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.377][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:02.382][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:06:02.386][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:06:02.388][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2024-12-07 16:06:02.390][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:06:02.391][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2024-12-07 16:06:02.394][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:02.395][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:02.397][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:02.403][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:02.404][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:02.405][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:02.406][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:02.408][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.413][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.418][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:02.423][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:02.424][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:02.425][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:02.432][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:02.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:02.434][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:02.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:02.437][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.442][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.447][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:02.452][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:02.453][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:02.454][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:02.460][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:02.461][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:02.462][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:02.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:02.465][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.470][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.475][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:02.480][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:06:02.482][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:02.483][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:02.484][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:02.490][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:02.491][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:02.492][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:02.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:02.495][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:02.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:02.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:02.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:02.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.505][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:02.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:02.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.510][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:02.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:02.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.515][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:02.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:02.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.520][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:02.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:02.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.525][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:02.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:02.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.530][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:02.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:02.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.535][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:02.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:02.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.539][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:02.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:02.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.544][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:02.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:02.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.549][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:02.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:02.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.554][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:02.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:02.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.559][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:02.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:02.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.564][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.569][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.574][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:02.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:02.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.579][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:02.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:02.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.584][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:02.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:02.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.589][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:02.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:02.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.594][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:02.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:02.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.599][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:02.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:02.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.603][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:02.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:02.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.608][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:02.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:02.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.613][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:02.615][private$selectFields]
biodb.TRACE[2024-12-07 16:06:02.616][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:02.617][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:02.618][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:02.619][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:02.621][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:02.622][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.623][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.624][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:02.626][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:02.627][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.628][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.629][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:02.630][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:02.632][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.633][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.634][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:02.635][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:02.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.638][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.639][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:02.640][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:02.641][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.643][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.644][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:02.645][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:02.646][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.647][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.649][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:02.650][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:02.651][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.652][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.653][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.659][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.661][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.663][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:02.664][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:02.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.666][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.667][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:02.669][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:02.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.671][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.672][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:02.674][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:02.675][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.676][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.677][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:02.678][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:02.680][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.681][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.682][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:02.683][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:02.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.686][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.687][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:02.688][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:02.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.690][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.692][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:02.693][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:02.694][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.695][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.696][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:02.698][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:02.699][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.700][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.701][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:02.703][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:02.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.705][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.706][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:02.707][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:02.709][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.710][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.711][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:02.712][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:02.713][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.715][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.716][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.717][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.718][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.719][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.721][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:02.722][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:02.723][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.724][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.725][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:02.727][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:02.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.729][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.730][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:02.732][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:02.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.734][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.735][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:02.737][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:02.738][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.739][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.740][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:02.741][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:02.742][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:02.744][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:02.745][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.746][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.747][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:02.749][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:02.750][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.751][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.752][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:02.753][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:02.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.756][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.757][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:02.758][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:02.759][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.760][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.762][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:02.763][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:02.764][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.765][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.766][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:02.768][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:02.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.770][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.771][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:02.773][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:02.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.775][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.776][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.777][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.779][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.780][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.781][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:02.782][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:02.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.785][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.786][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:02.787][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:02.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.790][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.791][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:02.792][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:02.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.794][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.796][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:02.797][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:02.798][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.799][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.800][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:06:02.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:02.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:02.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:02.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:02.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.812][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:02.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:02.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.817][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:02.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:02.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.821][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:02.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:02.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.826][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:02.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:02.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.832][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:02.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:02.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.836][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:02.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:02.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.841][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:02.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:02.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.846][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:02.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:02.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.851][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:02.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:02.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.856][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:02.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:02.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.862][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:02.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:02.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.867][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:02.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:02.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.872][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:02.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:02.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.877][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:02.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:02.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.882][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:02.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:02.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.887][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:02.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:02.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.892][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:02.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:02.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.897][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:02.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:02.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.902][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:02.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:02.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.907][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.912][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.917][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.922][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:02.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:02.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.927][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:02.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:02.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.932][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:02.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:02.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.937][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:02.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:02.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.942][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:02.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:02.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.947][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:02.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:02.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.952][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:02.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:02.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.957][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:02.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:02.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.962][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:02.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:02.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.967][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:02.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:02.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.972][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:02.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:02.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.977][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:02.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:02.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.990][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [7799, 0, 7799, C16H31N2O8P, InChI=1S/C16H28N2O4.H3O4P/c1-5-12(6-2)22-14-9-11(16(20)21-7-3)8-13(17)15(14)18-10(4)19;1-5(2,3)4/h9,12-15H,5-8,17H2,1-4H3,(H,18,19);(H3,1,2,3,4)/t13-,14+,15+;/m0./s1, ...].
biodb.DEBUG[2024-12-07 16:06:02.991][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:02.992][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:02.994][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:03.000][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:03.001][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:03.002][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:03.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:03.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:03.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:03.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.010][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:03.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:03.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.015][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:03.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:03.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.020][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:03.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:03.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.025][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.029][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.034][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:03.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:03.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.039][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:03.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:03.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.044][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:03.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:03.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.049][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:03.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:03.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.054][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:03.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:03.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.059][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:03.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:03.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.068][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:03.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:03.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.073][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:03.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:03.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.078][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.083][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.088][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:03.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:03.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.093][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:03.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:03.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.098][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:03.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:03.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.103][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:03.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:03.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.108][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:03.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:03.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.113][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:03.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:03.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.117][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:03.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:03.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.122][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:03.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:03.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.127][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:03.128][private$selectFields]
biodb.TRACE[2024-12-07 16:06:03.130][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:03.131][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:03.132][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:03.133][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:03.134][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:03.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.137][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.138][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:03.139][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:03.140][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.142][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.143][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.144][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.146][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.148][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:03.149][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:03.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.151][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.152][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:03.154][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:03.155][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.156][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.157][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:03.159][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:03.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.161][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.162][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:03.164][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:03.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.166][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.167][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.168][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.171][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.172][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:03.173][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:03.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.176][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.177][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:03.178][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:03.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.181][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.182][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:03.183][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:03.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.186][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.187][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:03.188][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:03.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.191][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.192][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:03.193][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:03.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.196][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.197][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:03.198][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:03.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.200][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.202][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.203][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.205][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.207][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:03.208][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:03.209][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.210][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.212][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:03.213][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:03.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.215][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.216][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:03.218][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:03.219][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.220][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.221][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:03.223][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:03.224][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.225][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.226][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.228][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.230][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.231][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:03.233][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:03.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.235][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.236][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:03.237][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:03.239][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.240][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.241][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:03.242][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:03.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.245][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.246][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:03.247][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:03.249][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.250][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.251][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:06:03.252][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:06:03.253][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:03.255][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:03.256][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.257][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.258][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:03.260][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:03.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.262][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.263][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.265][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.266][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.267][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.268][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:03.270][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:03.271][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.272][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.273][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:03.275][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:03.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.277][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.278][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:03.280][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:03.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.282][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.283][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.284][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.287][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.288][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:03.289][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:03.291][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.292][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.293][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:03.294][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:03.295][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.297][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.298][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:03.299][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:03.300][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.302][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.303][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:03.304][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:03.305][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.307][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.308][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:06:03.309][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:03.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:03.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.314][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:03.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:03.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:03.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:03.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.324][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:03.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:03.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.329][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:03.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:03.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.334][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:03.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:03.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.340][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.345][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.350][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.355][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:03.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:03.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.360][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:03.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:03.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.365][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:03.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:03.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.370][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:03.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:03.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.375][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:03.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:03.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.380][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:03.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:03.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.385][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:03.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:03.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.391][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:03.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:03.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.396][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:03.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:03.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.401][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.406][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.411][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.416][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:03.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:03.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.421][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:03.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:03.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.426][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:03.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:03.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.432][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:03.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:03.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.437][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:03.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:03.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.442][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:03.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:03.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.447][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:03.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:03.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.452][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:03.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:03.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.457][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:03.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:03.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.462][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:03.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:03.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.467][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:03.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:03.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.472][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:03.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:03.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.488][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [71954, 0, 71954, C18H21F3N6O2, InChI=1S/C18H21F3N6O2/c19-18(20,21)13-9-15(22)23-11-12(13)14-10-16(26-1-5-28-6-2-26)25-17(24-14)27-3-7-29-8-4-27/h9-11H,1-8H2,(H2,22,23), ...].
biodb.DEBUG[2024-12-07 16:06:03.489][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:03.490][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:03.492][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:03.498][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:03.499][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:03.500][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:03.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:03.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:03.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:03.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:03.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:03.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.512][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:03.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:03.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.517][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:03.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:03.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.522][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.527][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.532][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:03.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:03.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.537][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:03.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:03.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.542][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:03.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:03.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.547][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:03.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:03.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.552][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:03.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:03.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.557][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:03.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:03.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.562][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:03.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:03.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.567][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:03.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:03.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.572][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.576][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.581][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:03.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:03.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.586][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:03.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:03.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.591][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:03.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:03.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.596][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:03.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:03.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.601][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:03.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:03.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.606][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:03.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:03.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.611][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:03.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:03.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.616][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:03.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:03.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.621][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:03.622][private$selectFields]
biodb.TRACE[2024-12-07 16:06:03.623][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:03.624][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:03.625][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:03.627][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:03.628][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:03.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.630][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.631][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:03.633][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:03.634][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.635][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.636][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.638][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.640][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.641][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:03.642][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:03.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.645][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.646][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:03.647][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:03.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.650][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.651][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:03.652][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:03.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.654][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.656][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:03.657][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:03.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.659][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.661][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.662][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.663][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.664][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.666][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:03.667][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:03.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.669][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.670][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:03.672][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:03.673][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.674][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.675][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:03.677][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:03.678][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.679][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.680][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:03.682][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:03.683][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.684][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.685][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:03.687][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:03.688][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.689][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.690][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:03.691][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:03.693][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.694][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.695][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.696][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.697][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.699][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.700][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:03.701][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:03.702][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.703][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.705][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:03.706][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:03.707][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.708][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.710][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:03.711][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:03.712][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.713][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.714][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:03.716][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:03.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.718][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.719][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.721][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.723][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.724][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:03.726][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:03.727][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.728][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.729][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:03.730][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:03.732][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.733][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.734][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:03.735][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:03.737][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.738][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.739][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:03.740][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:03.742][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.743][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.744][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:06:03.745][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:06:03.747][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:03.748][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:03.749][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.750][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.751][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:03.753][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:03.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.755][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.756][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.758][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.759][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.760][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.761][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:03.762][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:03.764][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.765][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.766][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:03.767][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:03.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.770][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.771][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:03.772][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:03.773][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.774][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.776][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.777][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.779][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.781][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:03.782][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:03.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.784][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.785][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:03.787][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:03.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.789][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.790][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:03.792][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:03.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.794][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.795][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:03.796][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:03.798][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.799][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.800][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:06:03.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:03.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:03.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.806][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:03.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:03.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:03.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:03.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.816][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:03.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:03.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.821][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:03.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:03.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.826][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:03.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:03.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.831][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.836][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.841][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.847][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:03.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:03.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.852][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:03.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:03.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.857][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:03.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:03.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.862][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:03.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:03.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.867][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:03.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:03.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.872][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:03.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:03.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.877][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:03.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:03.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.886][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:03.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:03.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.891][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:03.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:03.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.896][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.901][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.906][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.911][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:03.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:03.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.916][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:03.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:03.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.920][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:03.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:03.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.926][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:03.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:03.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.930][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:03.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:03.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.935][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:03.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:03.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.940][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:03.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:03.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.945][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:03.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:03.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.950][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:03.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:03.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.955][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:03.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:03.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.960][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:03.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:03.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.965][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:03.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:03.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.977][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [197612, 0, 197612, C18H18O9S, InChI=1S/C18H18O9S/c1-7-3-9(19)13-11(4-7)27-16-8(14(13)21)5-12(28-16)18(25,17(24)26-2)6-10(20)15(22)23/h3-4,10,12,19-20,25H,5-6H2,1-2H3,(H,22,23)/t10-,12+,18?/m1/s1, ...].
biodb.DEBUG[2024-12-07 16:06:03.978][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:06:03.979][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:06:03.990][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:03.991][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:03.992][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:03.998][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:03.999][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:04.000][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:04.001][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:04.005][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:06:04.009][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:06:04.011][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-12-07 16:06:04.012][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:06:04.014][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-12-07 16:06:04.016][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:04.018][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:04.019][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:04.025][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:04.026][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:04.027][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:04.028][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:04.030][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:04.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:04.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.034][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:04.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:04.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.039][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:04.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:04.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:04.045][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:06:04.049][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:06:04.051][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-12-07 16:06:04.052][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:06:04.054][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-12-07 16:06:04.057][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:04.058][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:04.059][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:04.065][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:04.066][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:04.067][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:04.068][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:04.070][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:04.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:04.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.075][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:04.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:04.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.080][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:04.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:04.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:04.085][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:04.086][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:04.087][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:04.093][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:04.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:04.095][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:04.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:04.098][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:04.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:04.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.103][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:04.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:04.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.107][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:04.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:04.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:04.113][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:06:04.115][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:04.116][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:04.117][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:04.123][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:04.124][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:04.125][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:04.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:04.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:04.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:04.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:04.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:04.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.138][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:04.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:04.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.143][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:04.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:04.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.147][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:04.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:04.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.152][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:04.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:04.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.157][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:04.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:04.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.162][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:04.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:04.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.167][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:04.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:04.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.172][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:04.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:04.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.177][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:04.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:04.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.182][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:04.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:04.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.187][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:04.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:04.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.191][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:04.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:04.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.196][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:04.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:04.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.201][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:04.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:04.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.206][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:04.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:04.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.211][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:04.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:04.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.216][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:04.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:04.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.221][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:04.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:04.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.226][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:04.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:04.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.231][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:04.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:04.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.235][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:04.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:04.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.240][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:04.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:04.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.245][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:04.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:04.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.250][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:04.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:04.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.255][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:04.256][private$selectFields]
biodb.TRACE[2024-12-07 16:06:04.257][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:04.259][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:04.260][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:04.261][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:04.262][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:04.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.265][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.266][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:04.267][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:04.268][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.269][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.271][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:04.272][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:04.273][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.274][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.276][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:04.277][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:04.278][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.279][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.280][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:04.282][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:04.283][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.284][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.285][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:04.287][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:04.288][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.289][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.290][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:04.291][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:04.298][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.299][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.300][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:04.302][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:04.303][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.304][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.305][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:04.307][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:04.308][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.309][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.310][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:04.311][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:04.313][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.314][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.315][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:04.316][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:04.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.319][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.320][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:04.321][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:04.322][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.323][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.325][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:04.326][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:04.327][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.328][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.330][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:04.331][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:04.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.333][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.334][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:04.336][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:04.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.338][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.339][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:04.341][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:04.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.343][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.344][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:04.345][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:04.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.348][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.349][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:04.350][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:04.351][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.353][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.354][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:04.355][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:04.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.357][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.359][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:04.360][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:04.361][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.362][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.363][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:04.365][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:04.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.367][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.368][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:04.369][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:04.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.372][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.373][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:04.374][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:04.375][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.376][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.378][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:04.379][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:04.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.381][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.382][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:04.384][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:04.385][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.386][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.387][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:04.388][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:04.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.391][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.392][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:06:04.393][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:06:04.394][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:04.396][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:04.397][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.398][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.399][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:04.400][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:04.401][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.403][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.404][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:04.405][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:04.406][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.407][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.408][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:04.410][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:04.411][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.412][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.413][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:04.414][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:04.416][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.417][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.418][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:04.419][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:04.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.422][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.423][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:04.424][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:04.425][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.426][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.427][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:04.429][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:04.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.431][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.432][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:04.433][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:04.435][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.436][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.437][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:04.438][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:04.439][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.440][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.442][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:04.443][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:04.444][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.445][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.446][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:06:04.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:04.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:04.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:04.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:04.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.457][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:04.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:04.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.462][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:04.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:04.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.467][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:04.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:04.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.472][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:04.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:04.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.477][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:04.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:04.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.482][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:04.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:04.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.487][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:04.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:04.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.492][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:04.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:04.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.497][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:04.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:04.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.502][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:04.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:04.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.507][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:04.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:04.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.512][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:04.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:04.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.517][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:04.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:04.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.522][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:04.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:04.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.526][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:04.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:04.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.531][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:04.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:04.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.536][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:04.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:04.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.541][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:04.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:04.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.546][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:04.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:04.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.551][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:04.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:04.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.556][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:04.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:04.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.561][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:04.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:04.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.566][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:04.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:04.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.571][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:04.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:04.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.576][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:04.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:04.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.581][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:04.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:04.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.586][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:04.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:04.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.591][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:04.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:04.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.596][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:04.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:04.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.601][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:04.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:04.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.606][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:04.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:04.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.618][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [192288, 0, 192288, C27H54O2, InChI=1S/C27H54O2/c1-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-24-25-26-27(28)29-2/h3-26H2,1-2H3, ...].
biodb.DEBUG[2024-12-07 16:06:04.619][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:04.620][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:04.621][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:04.628][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:04.629][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:04.630][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:04.631][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:04.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:04.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:04.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:04.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:04.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.642][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:04.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:04.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.647][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:04.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:04.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.652][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:04.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:04.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.657][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:04.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:04.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.662][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:04.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:04.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.666][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:04.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:04.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.671][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:04.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:04.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.676][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:04.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:04.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.681][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:04.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:04.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.686][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:04.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:04.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.691][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:04.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:04.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.700][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:04.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:04.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.705][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:04.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:04.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.710][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:04.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:04.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.715][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:04.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:04.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.719][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:04.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:04.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.724][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:04.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:04.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.729][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:04.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:04.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.734][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:04.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:04.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.739][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:04.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:04.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.744][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:04.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:04.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.749][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:04.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:04.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.753][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:04.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:04.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.758][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:04.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:04.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.763][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:04.764][private$selectFields]
biodb.TRACE[2024-12-07 16:06:04.765][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:04.767][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:04.768][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:04.769][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:04.770][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:04.771][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.773][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.774][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:04.775][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:04.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.777][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.779][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:04.780][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:04.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.782][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.783][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:04.785][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:04.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.787][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.788][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:04.790][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:04.791][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.792][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.793][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:04.794][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:04.796][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.797][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.798][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:04.799][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:04.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.802][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.803][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:04.804][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:04.805][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.806][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.808][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:04.809][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:04.810][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.811][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.812][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:04.814][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:04.815][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.816][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.817][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:04.818][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:04.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.821][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.822][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:04.823][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:04.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.826][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.827][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:04.828][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:04.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.831][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.832][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:04.833][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:04.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.835][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.837][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:04.838][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:04.839][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.840][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.841][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:04.843][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:04.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.845][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.846][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:04.848][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:04.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.850][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.851][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:04.853][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:04.854][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.855][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.856][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:04.857][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:04.859][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.860][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.861][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:04.862][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:04.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.865][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.866][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:04.867][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:04.868][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.870][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.871][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:04.872][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:04.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.875][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.876][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:04.877][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:04.878][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.879][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.881][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:04.882][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:04.883][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.884][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.886][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:04.887][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:04.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.889][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.891][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:04.892][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:04.893][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.894][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.896][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:04.897][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:04.898][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:04.900][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:04.901][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.902][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.903][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:04.905][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:04.906][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.907][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.908][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:04.909][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:04.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.912][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.913][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:04.914][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:04.915][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.916][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.918][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:04.919][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:04.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.921][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.922][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:04.924][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:04.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.926][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.927][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:04.929][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:04.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.931][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.932][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:04.933][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:04.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.936][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.937][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:04.938][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:04.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.941][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.942][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:04.943][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:04.944][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.945][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.947][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:04.948][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:04.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.950][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.951][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:04.953][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:04.954][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.955][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.956][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:06:04.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:04.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:04.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.962][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:04.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:04.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:04.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:04.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.972][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:04.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:04.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.977][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:04.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:04.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.982][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:04.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:04.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.987][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:04.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:04.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.992][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:04.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:04.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.997][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:04.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:04.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.002][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:05.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:05.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.007][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:05.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:05.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.012][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:05.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:05.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.017][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:05.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:05.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.022][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:05.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:05.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.027][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:05.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:05.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.032][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:05.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:05.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.037][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:05.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:05.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.041][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:05.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:05.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.046][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:05.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:05.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.051][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:05.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:05.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.056][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:05.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:05.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.061][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:05.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:05.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.066][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:05.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:05.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.071][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:05.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:05.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.076][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:05.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:05.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.081][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:05.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:05.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.086][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:05.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:05.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.091][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:05.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:05.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.096][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:05.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:05.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.104][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:05.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:05.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.109][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:05.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:05.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.114][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:05.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:05.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.119][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:05.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:05.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.124][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:05.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:05.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.129][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:05.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:05.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.134][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:05.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:05.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.146][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2024-12-07 16:06:05.148][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:05.149][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:05.150][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:05.156][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:05.157][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:05.158][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:05.159][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:05.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:05.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:05.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:05.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:05.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.170][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:05.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:05.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.175][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:05.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:05.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.180][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:05.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:05.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.185][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:05.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:05.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.189][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:05.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:05.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.194][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:05.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:05.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.199][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:05.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:05.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.204][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:05.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:05.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.209][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:05.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:05.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.213][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:05.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:05.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.218][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:05.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:05.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.223][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:05.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:05.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.228][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:05.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:05.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.233][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:05.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:05.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.237][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:05.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:05.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.242][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:05.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:05.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.247][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:05.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:05.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.252][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:05.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:05.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.257][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:05.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:05.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.262][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:05.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:05.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.266][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:05.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:05.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.271][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:05.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:05.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.276][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:05.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:05.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.281][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:05.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:05.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.286][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:05.287][private$selectFields]
biodb.TRACE[2024-12-07 16:06:05.288][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:05.289][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:05.290][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:05.292][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:05.293][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:05.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.295][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.296][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:05.298][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:05.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.300][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.301][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:05.302][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:05.304][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.305][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.306][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:05.307][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:05.308][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.310][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.311][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:05.312][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:05.313][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.314][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.316][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:05.317][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:05.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.319][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.320][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:05.322][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:05.323][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.324][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.325][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:05.326][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:05.328][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.329][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.330][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:05.331][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:05.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.334][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.335][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:05.336][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:05.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.338][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.339][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:05.341][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:05.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.343][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.344][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:05.346][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:05.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.348][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.349][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:05.350][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:05.352][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.353][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.354][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:05.355][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:05.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.357][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.359][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:05.360][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:05.361][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.362][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.363][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:05.365][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:05.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.367][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.368][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:05.370][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:05.371][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.372][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.373][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:05.374][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:05.375][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.377][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.378][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:05.379][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:05.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.381][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.383][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:05.384][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:05.385][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.386][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.387][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:05.389][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:05.390][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.391][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.392][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:05.393][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:05.395][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.396][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.397][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:05.398][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:05.399][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.401][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.402][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:05.403][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:05.404][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.405][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.407][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:05.408][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:05.409][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.410][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.411][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:05.413][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:05.414][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.415][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.416][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:06:05.417][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:06:05.419][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:05.420][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:05.421][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.422][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.423][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:05.425][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:05.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.427][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.428][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:05.429][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:05.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.432][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.433][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:05.434][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:05.435][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.436][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.438][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:05.439][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:05.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.441][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.442][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:05.444][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:05.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.446][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.447][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:05.448][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:05.450][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.451][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.452][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:05.453][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:05.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.456][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.457][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:05.458][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:05.459][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.460][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.462][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:05.463][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:05.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.465][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.466][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:05.468][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:05.469][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.472][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.473][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:06:05.474][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:05.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:05.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.479][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:05.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:05.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:05.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:05.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.489][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:05.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:05.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.494][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:05.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:05.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.503][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:05.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:05.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.509][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:05.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:05.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.513][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:05.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:05.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.518][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:05.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:05.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.523][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:05.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:05.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.528][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:05.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:05.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.533][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:05.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:05.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.538][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:05.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:05.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.543][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:05.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:05.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.548][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:05.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:05.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.553][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:05.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:05.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.558][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:05.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:05.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.563][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:05.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:05.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.568][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:05.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:05.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.573][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:05.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:05.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.578][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:05.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:05.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.583][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:05.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:05.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.588][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:05.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:05.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.593][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:05.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:05.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.598][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:05.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:05.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.603][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:05.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:05.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.608][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:05.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:05.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.613][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:05.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:05.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.618][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:05.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:05.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.623][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:05.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:05.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.628][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:05.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:05.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.633][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:05.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:05.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.637][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:05.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:05.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.650][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [209892, 0, 209892, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-30(8)25-13-14-26-27(4,5)17-10-18-28(26,6)24(25)16-20-29(23,30)7/h11,13,22-24,26H,9-10,12,14-20H2,1-8H3/t22-,23+,24+,26+,28-,29+,30-/m1/s1, ...].
biodb.DEBUG[2024-12-07 16:06:05.651][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:06:05.652][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:06:05.656][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:05.657][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:05.658][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:05.665][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:05.666][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:05.667][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:05.668][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:05.672][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:06:05.676][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:06:05.677][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2024-12-07 16:06:05.679][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:06:05.681][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2024-12-07 16:06:05.684][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:05.685][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:05.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:05.692][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:05.693][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:05.694][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:05.696][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:05.697][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:05.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:05.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.702][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:05.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:05.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.707][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:05.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:05.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:05.712][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:05.713][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:05.714][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:05.720][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:05.722][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:05.723][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:05.724][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:05.725][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:05.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:05.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.730][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:05.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:05.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.735][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:05.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:05.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:05.741][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:06:05.745][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:06:05.747][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2024-12-07 16:06:05.748][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:06:05.750][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2024-12-07 16:06:05.753][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:05.754][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:05.755][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:05.761][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:05.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:05.764][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:05.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:05.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:05.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:05.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.771][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:05.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:05.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.776][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:05.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:05.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:05.781][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:05.782][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:05.783][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:05.789][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:05.791][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:05.792][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:05.793][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:05.794][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:05.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:05.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.799][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:05.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:05.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.804][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:05.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:05.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:05.809][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:05.810][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:05.811][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:05.817][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:05.819][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:05.820][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:05.821][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:05.822][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:05.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:05.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.827][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:05.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:05.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.832][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:05.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:05.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:05.838][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:06:05.839][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:05.841][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:05.842][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:05.848][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:05.849][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:05.850][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:05.851][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:05.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:05.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:05.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:05.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:05.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.863][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:05.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:05.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.868][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:05.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:05.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.873][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:05.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:05.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.878][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:05.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:05.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.883][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:05.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:05.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.888][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:05.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:05.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.893][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:05.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:05.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.898][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:05.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:05.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.903][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:05.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:05.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.908][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:05.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:05.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.913][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:05.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:05.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.923][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:05.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:05.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.928][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:05.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:05.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.933][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:05.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:05.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.938][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:05.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:05.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.943][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:05.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:05.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.948][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:05.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:05.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.953][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:05.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:05.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.958][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:05.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:05.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.963][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:05.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:05.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.968][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:05.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:05.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.973][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:05.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:05.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.978][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:05.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:05.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.983][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:05.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:05.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.988][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:05.989][private$selectFields]
biodb.TRACE[2024-12-07 16:06:05.990][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:05.991][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:05.992][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:05.994][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:05.995][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:05.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.997][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.998][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:06.000][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:06.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.002][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.003][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:06.005][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:06.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.007][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.008][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:06.009][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:06.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.012][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.013][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:06.014][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:06.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.017][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.018][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:06.019][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:06.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.022][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.023][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:06.024][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:06.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.027][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.028][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:06.029][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:06.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.031][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.033][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:06.034][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:06.035][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.036][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.037][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:06.039][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:06.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.041][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.042][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:06.044][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:06.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.046][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.047][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:06.049][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:06.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.051][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.052][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:06.053][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:06.055][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.056][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.057][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:06.058][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:06.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.061][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.062][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:06.063][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:06.064][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.065][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.067][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:06.068][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:06.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.070][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.072][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:06.073][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:06.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.075][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.076][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:06.078][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:06.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.080][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.081][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:06.082][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:06.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.085][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.086][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:06.087][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:06.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.090][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.091][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:06.092][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:06.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.095][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.096][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:06.097][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:06.098][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.099][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.101][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:06.102][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:06.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.104][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.105][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:06.107][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:06.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.109][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.110][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:06.112][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:06.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.114][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.115][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:06.116][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:06.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.119][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.120][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:06.121][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:06.123][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:06.124][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:06.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.126][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.127][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:06.129][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:06.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.131][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.132][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:06.134][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:06.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.136][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.137][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:06.138][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:06.140][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.141][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.142][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:06.143][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:06.144][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.146][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.147][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:06.148][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:06.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.150][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.152][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:06.153][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:06.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.155][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.156][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:06.158][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:06.159][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.160][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.161][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:06.163][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:06.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.165][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.166][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:06.167][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:06.169][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.170][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.171][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:06.172][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:06.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.175][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.176][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:06.177][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:06.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.180][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.181][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:06:06.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:06.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:06.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:06.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:06.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:06.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:06.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.197][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:06.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:06.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.202][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:06.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:06.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.207][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:06.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:06.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.212][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:06.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:06.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.217][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:06.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:06.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.222][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:06.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:06.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.227][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:06.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:06.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.232][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:06.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:06.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.237][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:06.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:06.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.242][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:06.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:06.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.247][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:06.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:06.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.252][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:06.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:06.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.257][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:06.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:06.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.262][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:06.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:06.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.267][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:06.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:06.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.272][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:06.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:06.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.277][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:06.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:06.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.282][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:06.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:06.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.287][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:06.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:06.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.292][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:06.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:06.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.297][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:06.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:06.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.302][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:06.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:06.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.307][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:06.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:06.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.312][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:06.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:06.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.317][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:06.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:06.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.327][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:06.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:06.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.332][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:06.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:06.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.337][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:06.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:06.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.342][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:06.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:06.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.347][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:06.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:06.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.352][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:06.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:06.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.357][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:06.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:06.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.362][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:06.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:06.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.375][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2024-12-07 16:06:06.376][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:06.377][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:06.379][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:06.385][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:06.386][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:06.387][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:06.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:06.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:06.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:06.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:06.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:06.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.400][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:06.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:06.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.405][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:06.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:06.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.410][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:06.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:06.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.415][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:06.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:06.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.419][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:06.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:06.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.424][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:06.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:06.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.429][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:06.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:06.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.434][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:06.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:06.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.439][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:06.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:06.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.444][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:06.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:06.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.449][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:06.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:06.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.454][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:06.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:06.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.459][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:06.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:06.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.464][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:06.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:06.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.469][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:06.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:06.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.474][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:06.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:06.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.479][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:06.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:06.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.484][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:06.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:06.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.489][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:06.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:06.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.494][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:06.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:06.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.499][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:06.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:06.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.505][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:06.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:06.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.510][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:06.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:06.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.515][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:06.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:06.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.520][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:06.521][private$selectFields]
biodb.TRACE[2024-12-07 16:06:06.523][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:06.524][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:06.525][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:06.526][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:06.528][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:06.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.530][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.531][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:06.533][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:06.534][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.535][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.536][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:06.538][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:06.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.540][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.541][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:06.542][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:06.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.545][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.546][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:06.547][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:06.549][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.550][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.551][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:06.552][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:06.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.555][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.556][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:06.557][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:06.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.560][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.561][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:06.562][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:06.563][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.564][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.566][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:06.567][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:06.568][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.569][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.571][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:06.572][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:06.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.574][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.576][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:06.577][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:06.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.579][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.580][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:06.582][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:06.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.584][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.585][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:06.587][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:06.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.589][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.590][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:06.592][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:06.593][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.594][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.595][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:06.597][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:06.598][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.599][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.600][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:06.602][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:06.603][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.604][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.605][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:06.607][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:06.608][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.609][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.610][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:06.611][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:06.613][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.614][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.615][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:06.616][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:06.618][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.619][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.620][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:06.621][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:06.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.624][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.625][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:06.626][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:06.627][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.629][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.630][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:06.631][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:06.632][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.634][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.635][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:06.636][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:06.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.639][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.640][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:06.641][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:06.642][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.644][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.645][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:06.646][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:06.647][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.648][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.650][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:06.651][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:06.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.653][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.655][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:06.656][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:06.657][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:06.658][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:06.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.661][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.662][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:06.663][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:06.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.666][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.667][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:06.668][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:06.669][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.671][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.672][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:06.673][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:06.674][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.676][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.677][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:06.678][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:06.679][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.680][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.682][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:06.683][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:06.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.685][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.687][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:06.688][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:06.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.690][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.691][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:06.693][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:06.694][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.695][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.696][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:06.698][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:06.699][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.700][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.701][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:06.703][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:06.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.705][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.706][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:06.707][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:06.709][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.710][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.711][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:06.712][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:06.714][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.715][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.716][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:06:06.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:06.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:06.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.722][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:06.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:06.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:06.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:06.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.737][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:06.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:06.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.742][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:06.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:06.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.747][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:06.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:06.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.752][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:06.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:06.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.757][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:06.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:06.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.762][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:06.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:06.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.767][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:06.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:06.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.772][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:06.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:06.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.777][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:06.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:06.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.782][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:06.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:06.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.787][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:06.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:06.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.792][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:06.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:06.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.797][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:06.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:06.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.802][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:06.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:06.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.807][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:06.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:06.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.812][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:06.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:06.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.817][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:06.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:06.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.822][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:06.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:06.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.827][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:06.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:06.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.832][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:06.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:06.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.837][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:06.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:06.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.842][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:06.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:06.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.847][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:06.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:06.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.852][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:06.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:06.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.857][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:06.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:06.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.862][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:06.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:06.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.867][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:06.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:06.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.873][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:06.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:06.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.877][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:06.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:06.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.883][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:06.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:06.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.888][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:06.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:06.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.893][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:06.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:06.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.898][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:06.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:06.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.911][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [16587, 0, 16587, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)9-8-22(31)26(5,33)21-7-11-27(34)16-12-18(28)17-13-19(29)20(30)14-24(17,3)15(16)6-10-25(21,27)4/h12,15,17,19-22,29-34H,6-11,13-14H2,1-5H3/t15-,17-,19+,20-,21-,22+,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2024-12-07 16:06:06.913][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:06.914][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:06.915][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:06.921][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:06.922][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:06.923][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:06.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:06.926][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:06.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:06.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.931][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:06.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:06.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.936][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:06.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:06.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.941][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:06.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:06.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.946][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:06.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:06.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.951][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:06.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:06.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.956][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:06.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:06.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.962][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:06.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:06.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.967][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:06.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:06.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.972][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:06.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:06.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.977][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:06.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:06.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.982][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:06.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:06.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.987][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:06.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:06.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.992][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:06.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:06.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.997][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:06.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.002][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.007][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:07.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:07.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.012][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:07.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:07.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.017][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:07.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:07.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.022][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:07.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:07.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.027][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:07.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:07.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.032][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:07.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:07.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.037][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:07.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:07.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.042][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:07.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:07.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.047][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:07.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:07.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.052][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:07.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:07.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.057][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:07.059][private$selectFields]
biodb.TRACE[2024-12-07 16:06:07.060][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:07.061][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:07.062][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:07.063][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:07.065][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:07.066][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.067][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.068][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:07.070][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:07.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.072][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.073][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.075][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.077][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.078][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:07.080][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:07.081][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.082][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.083][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:07.085][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:07.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.087][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.088][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:07.090][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:07.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.092][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.093][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:07.095][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:07.096][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.097][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.098][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.100][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.102][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.103][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:07.105][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:07.106][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.107][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.108][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:07.110][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:07.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.112][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.113][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:07.115][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:07.116][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.117][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.119][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:07.120][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:07.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.122][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.124][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:07.125][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:07.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.127][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.129][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:07.130][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:07.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.132][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.133][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:07.135][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:07.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.137][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.138][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.140][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.142][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.148][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:07.149][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:07.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.152][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.153][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:07.154][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:07.156][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.157][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.158][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:07.159][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:07.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.162][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.163][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:07.164][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:07.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.167][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.168][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.169][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.171][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.173][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:07.174][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:07.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.176][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.178][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:07.179][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:07.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.181][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.182][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:07.184][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:07.185][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.186][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.187][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:07.189][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:07.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.191][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.192][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:07.194][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:07.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.196][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.197][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:06:07.198][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:06:07.200][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:07.201][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:07.202][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.203][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.204][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:07.206][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:07.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.208][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.210][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.211][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.213][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.215][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:07.216][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:07.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.218][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.219][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:07.221][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:07.222][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.223][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.224][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:07.226][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:07.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.228][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.229][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.230][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.233][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.234][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:07.235][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:07.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.238][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.239][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:07.240][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:07.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.243][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.244][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:07.245][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:07.246][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.247][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.249][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:07.250][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:07.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.252][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.254][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:06:07.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:07.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:07.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:07.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:07.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:07.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:07.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.270][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:07.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:07.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.275][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:07.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:07.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.280][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:07.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:07.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.285][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.290][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.295][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.300][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:07.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:07.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.307][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:07.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:07.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.312][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:07.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:07.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.317][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:07.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:07.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.322][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:07.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:07.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.327][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:07.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:07.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.332][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:07.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:07.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.338][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:07.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:07.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.343][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:07.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:07.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.348][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.353][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.358][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.364][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:07.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:07.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.370][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:07.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:07.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.375][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:07.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:07.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.380][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:07.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:07.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.385][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:07.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:07.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.390][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:07.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:07.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.395][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:07.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:07.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.400][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:07.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:07.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.406][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:07.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:07.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.411][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:07.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:07.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.416][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:07.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:07.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.421][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:07.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:07.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.435][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [19804, 0, 19804, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)8-5-9-26(33,15-28)22-7-11-27(34)17-12-19(29)18-13-20(30)21(31)14-24(18,3)16(17)6-10-25(22,27)4/h12,16,18,20-22,28,30-34H,5-11,13-15H2,1-4H3/t16-,18-,20+,21-,22-,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2024-12-07 16:06:07.436][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:06:07.438][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:06:07.442][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:07.444][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:07.445][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:07.451][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:07.461][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:07.462][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:07.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:07.467][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:06:07.478][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:06:07.480][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2024-12-07 16:06:07.481][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:06:07.483][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2024-12-07 16:06:07.490][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:07.491][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:07.492][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:07.498][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:07.499][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:07.500][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:07.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:07.503][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.508][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.515][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:07.520][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:07.521][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:07.523][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:07.529][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:07.530][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:07.531][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:07.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:07.534][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.539][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.544][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:07.549][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:07.550][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:07.552][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:07.558][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:07.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:07.560][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:07.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:07.563][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.568][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.573][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:07.578][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:07.579][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:07.581][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:07.587][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:07.593][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:07.595][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:07.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:07.597][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.602][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.608][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:07.613][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:07.614][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:07.615][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:07.621][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:07.622][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:07.623][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:07.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:07.626][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.631][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.636][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:07.641][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:07.642][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:07.643][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:07.649][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:07.651][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:07.652][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:07.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:07.654][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.659][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.664][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:07.669][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:07.671][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:07.672][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:07.678][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:07.679][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:07.680][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:07.681][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:07.683][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.688][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.693][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:07.698][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:07.699][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:07.700][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:07.707][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:07.708][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:07.709][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:07.710][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:07.712][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.717][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.722][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:07.728][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:06:07.732][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:06:07.733][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2024-12-07 16:06:07.735][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:06:07.736][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2024-12-07 16:06:07.739][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:07.740][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:07.741][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:07.748][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:07.749][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:07.750][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:07.751][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:07.753][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.758][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.762][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:07.768][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:07.769][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:07.770][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:07.776][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:07.777][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:07.778][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:07.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:07.781][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.786][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.791][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:07.796][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:07.797][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:07.798][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:07.804][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:07.806][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:07.807][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:07.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:07.809][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.814][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.819][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:07.825][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:06:07.827][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:07.828][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:07.829][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:07.835][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:07.836][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:07.837][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:07.839][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:07.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:07.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:07.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:07.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:07.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.850][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:07.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:07.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.855][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:07.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:07.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.860][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.865][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.870][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:07.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:07.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.876][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:07.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:07.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.881][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:07.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:07.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.886][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:07.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:07.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.891][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:07.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:07.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.896][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:07.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:07.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.901][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:07.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:07.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.906][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:07.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:07.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.911][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.916][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.921][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:07.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:07.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.927][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:07.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:07.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.932][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:07.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:07.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.937][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:07.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:07.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.942][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:07.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:07.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.947][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:07.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:07.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.952][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:07.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:07.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.957][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:07.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:07.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.963][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:07.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:07.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.968][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:07.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:07.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.973][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:07.974][private$selectFields]
biodb.TRACE[2024-12-07 16:06:07.975][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:07.976][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:07.978][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:07.979][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:07.980][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:07.981][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.983][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.984][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:07.985][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:07.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.988][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.989][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.990][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.993][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.994][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:07.995][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:07.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.998][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.999][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:08.000][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:08.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.003][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.004][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:08.005][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:08.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.008][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.009][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:08.010][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:08.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.020][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.022][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:08.023][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:08.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.026][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.027][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:08.028][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:08.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.031][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.032][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:08.033][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:08.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.036][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.037][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:08.038][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:08.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.040][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.042][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:08.043][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:08.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.045][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.047][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:08.048][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:08.049][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.051][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.052][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:08.053][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:08.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.056][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.057][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:08.058][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:08.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.061][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.062][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:08.063][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:08.064][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.065][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.067][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:08.068][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:08.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.070][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.072][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:08.073][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:08.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.075][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.077][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:08.078][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:08.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.080][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.082][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:08.083][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:08.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.085][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.087][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:08.088][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:08.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.090][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.092][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:08.093][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:08.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.095][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.096][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:08.098][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:08.099][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.100][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.101][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:08.103][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:08.104][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.105][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.106][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:08.108][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:08.109][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.110][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.111][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:08.113][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:08.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.115][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.116][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:08.118][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:08.119][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:08.120][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:08.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.123][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.124][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:08.125][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:08.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.128][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.129][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:08.130][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:08.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.133][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.134][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:08.135][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:08.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.138][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.139][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:08.140][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:08.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.143][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.144][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:08.145][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:08.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.148][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.149][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:08.150][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:08.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.153][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.154][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:08.155][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:08.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.158][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.159][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:08.161][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:08.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.163][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.164][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:08.165][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:08.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.168][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.169][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:08.170][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:08.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.173][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.174][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:08.175][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:08.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.178][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.179][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:06:08.180][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:08.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:08.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:08.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:08.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:08.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:08.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.196][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:08.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:08.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.201][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:08.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:08.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.206][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:08.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:08.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.212][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:08.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:08.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.217][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:08.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:08.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.222][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:08.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:08.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.228][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:08.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:08.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.233][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:08.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:08.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.239][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:08.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:08.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.244][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:08.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:08.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.249][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:08.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:08.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.254][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:08.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:08.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.259][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:08.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:08.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.264][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:08.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:08.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.269][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:08.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:08.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.274][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:08.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:08.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.279][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:08.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:08.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.284][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:08.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:08.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.289][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:08.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:08.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.294][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:08.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:08.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.299][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:08.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:08.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.305][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:08.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:08.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.310][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:08.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:08.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.315][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:08.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:08.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.320][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:08.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:08.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.325][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:08.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:08.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.330][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:08.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:08.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.335][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:08.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:08.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.341][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:08.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:08.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.346][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:08.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:08.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.351][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:08.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:08.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.356][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:08.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:08.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.361][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:08.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:08.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.374][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [7799, 0, 7799, C16H31N2O8P, InChI=1S/C16H28N2O4.H3O4P/c1-5-12(6-2)22-14-9-11(16(20)21-7-3)8-13(17)15(14)18-10(4)19;1-5(2,3)4/h9,12-15H,5-8,17H2,1-4H3,(H,18,19);(H3,1,2,3,4)/t13-,14+,15+;/m0./s1, ...].
biodb.DEBUG[2024-12-07 16:06:08.376][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:08.377][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:08.379][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:08.385][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:08.386][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:08.388][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:08.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:08.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:08.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:08.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:08.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:08.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.400][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:08.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:08.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.405][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:08.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:08.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.410][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:08.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:08.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.415][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:08.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:08.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.420][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:08.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:08.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.425][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:08.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:08.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.430][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:08.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:08.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.439][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:08.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:08.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.444][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:08.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:08.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.449][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:08.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:08.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.454][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:08.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:08.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.459][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:08.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:08.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.464][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:08.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:08.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.469][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:08.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:08.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.474][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:08.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:08.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.478][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:08.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:08.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.483][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:08.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:08.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.488][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:08.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:08.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.493][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:08.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:08.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.498][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:08.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:08.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.503][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:08.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:08.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.508][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:08.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:08.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.513][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:08.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:08.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.518][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:08.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:08.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.523][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:08.524][private$selectFields]
biodb.TRACE[2024-12-07 16:06:08.525][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:08.526][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:08.527][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:08.529][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:08.530][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:08.531][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.532][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.534][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:08.535][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:08.536][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.537][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.538][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:08.540][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:08.541][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.542][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.543][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:08.545][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:08.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.547][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.548][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:08.549][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:08.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.552][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.553][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:08.554][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:08.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.557][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.558][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:08.559][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:08.560][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.561][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.563][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:08.564][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:08.565][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.566][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.567][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:08.569][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:08.570][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.571][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.573][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:08.574][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:08.575][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.576][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.577][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:08.579][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:08.580][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.581][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.582][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:08.584][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:08.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.586][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.587][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:08.589][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:08.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.591][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.592][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:08.593][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:08.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.596][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.597][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:08.598][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:08.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.601][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.602][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:08.603][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:08.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.606][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.607][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:08.608][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:08.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.611][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.612][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:08.613][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:08.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.615][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.617][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:08.618][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:08.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.620][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.622][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:08.623][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:08.624][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.625][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.627][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:08.628][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:08.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.630][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.631][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:08.633][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:08.634][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.635][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.636][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:08.638][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:08.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.640][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.641][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:08.643][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:08.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.645][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.646][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:08.648][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:08.649][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.650][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.651][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:08.653][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:08.654][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.655][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.656][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:06:08.658][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:06:08.659][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:08.660][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:08.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.662][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.664][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:08.665][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:08.666][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.667][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.669][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:08.670][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:08.671][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.672][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.674][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:08.675][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:08.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.677][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.678][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:08.680][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:08.681][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.682][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.683][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:08.685][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:08.686][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.687][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.688][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:08.690][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:08.691][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.692][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.693][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:08.695][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:08.696][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.697][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.698][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:08.700][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:08.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.702][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.703][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:08.704][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:08.706][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.707][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.708][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:08.709][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:08.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.712][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.713][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:06:08.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:08.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:08.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.719][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:08.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:08.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:08.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:08.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.730][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:08.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:08.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.735][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:08.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:08.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.740][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:08.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:08.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.745][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:08.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:08.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.750][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:08.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:08.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.755][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:08.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:08.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.760][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:08.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:08.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.765][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:08.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:08.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.770][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:08.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:08.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.775][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:08.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:08.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.780][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:08.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:08.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.785][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:08.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:08.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.790][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:08.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:08.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.795][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:08.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:08.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.800][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:08.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:08.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.805][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:08.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:08.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.810][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:08.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:08.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.815][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:08.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:08.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.820][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:08.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:08.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.825][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:08.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:08.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.830][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:08.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:08.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.835][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:08.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:08.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.840][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:08.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:08.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.850][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:08.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:08.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.855][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:08.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:08.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.860][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:08.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:08.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.865][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:08.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:08.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.870][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:08.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:08.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.875][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:08.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:08.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.880][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:08.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:08.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.892][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [71954, 0, 71954, C18H21F3N6O2, InChI=1S/C18H21F3N6O2/c19-18(20,21)13-9-15(22)23-11-12(13)14-10-16(26-1-5-28-6-2-26)25-17(24-14)27-3-7-29-8-4-27/h9-11H,1-8H2,(H2,22,23), ...].
biodb.DEBUG[2024-12-07 16:06:08.894][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:08.895][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:08.896][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:08.902][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:08.903][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:08.904][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:08.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:08.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:08.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:08.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:08.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:08.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.917][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:08.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:08.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.922][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:08.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:08.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.926][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:08.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:08.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.931][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:08.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:08.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.936][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:08.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:08.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.941][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:08.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:08.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.946][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:08.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:08.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.951][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:08.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:08.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.956][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:08.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:08.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.961][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:08.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:08.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.966][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:08.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:08.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.971][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:08.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:08.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.976][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:08.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:08.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.981][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:08.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:08.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.986][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:08.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:08.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.990][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:08.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:08.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.995][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:08.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:08.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.000][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:09.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:09.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.005][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:09.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:09.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.010][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:09.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:09.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.015][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:09.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:09.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.020][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:09.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:09.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.025][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:09.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:09.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.030][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:09.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:09.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.034][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:09.036][private$selectFields]
biodb.TRACE[2024-12-07 16:06:09.037][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:09.038][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:09.039][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:09.040][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:09.042][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:09.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.044][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.045][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:09.047][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:09.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.049][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.050][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:09.051][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:09.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.054][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.055][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:09.056][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:09.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.059][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.060][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:09.061][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:09.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.063][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.065][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:09.066][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:09.067][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.068][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.070][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:09.071][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:09.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.073][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.074][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:09.076][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:09.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.078][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.079][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.081][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.083][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.084][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:09.085][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:09.087][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.088][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.089][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:09.090][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:09.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.093][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.094][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:09.095][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:09.096][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.098][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.099][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:09.101][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:09.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.103][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.104][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:09.106][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:09.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.108][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.109][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:09.111][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:09.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.113][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.114][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:09.116][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:09.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.118][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.119][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:09.121][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:09.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.123][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.124][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:09.125][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:09.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.128][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.129][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:09.130][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:09.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.133][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.134][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:09.135][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:09.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.138][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.139][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:09.140][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:09.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.143][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.144][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.145][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.147][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.149][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:09.150][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:09.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.152][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.154][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:09.155][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:09.156][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.157][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.159][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:09.160][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:09.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.162][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.163][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:09.165][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:09.166][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.167][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.168][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:06:09.170][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:06:09.171][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:09.172][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:09.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.175][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.176][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:09.177][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:09.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.180][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.181][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:09.182][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:09.183][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.184][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.186][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:09.187][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:09.188][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.189][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.191][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:09.192][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:09.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.194][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.195][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:09.197][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:09.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.199][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.200][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:09.202][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:09.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.204][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.205][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.207][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.208][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.209][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.210][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:09.212][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:09.213][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.214][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.215][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:09.216][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:09.218][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.219][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.220][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:09.221][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:09.223][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.224][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.225][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:06:09.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:09.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:09.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:09.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:09.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:09.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:09.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.241][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:09.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:09.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.247][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:09.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:09.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.256][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:09.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:09.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.261][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:09.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:09.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.266][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:09.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:09.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.271][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:09.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:09.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.276][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:09.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:09.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.281][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:09.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:09.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.286][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:09.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:09.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.291][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:09.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:09.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.296][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:09.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:09.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.301][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:09.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:09.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.306][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:09.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:09.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.311][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:09.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:09.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.316][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:09.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:09.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.322][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:09.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:09.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.327][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:09.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:09.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.331][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:09.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:09.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.337][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.342][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.347][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.352][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:09.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:09.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.357][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:09.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:09.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.362][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:09.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:09.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.367][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:09.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:09.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.372][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:09.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:09.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.377][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:09.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:09.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.382][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:09.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:09.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.387][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:09.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:09.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.392][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:09.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:09.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.404][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [197612, 0, 197612, C18H18O9S, InChI=1S/C18H18O9S/c1-7-3-9(19)13-11(4-7)27-16-8(14(13)21)5-12(28-16)18(25,17(24)26-2)6-10(20)15(22)23/h3-4,10,12,19-20,25H,5-6H2,1-2H3,(H,22,23)/t10-,12+,18?/m1/s1, ...].
biodb.DEBUG[2024-12-07 16:06:09.406][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:06:09.407][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-12-07 16:06:09.415][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.420][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.425][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.430][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.435][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.440][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.445][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.450][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.455][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.460][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.465][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.470][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:09.478][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:09.479][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:09.481][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:09.487][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:09.488][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:09.489][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:09.490][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:09.494][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:06:09.498][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:06:09.499][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-12-07 16:06:09.501][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:06:09.503][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-12-07 16:06:09.506][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:06:09.511][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:06:09.512][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-12-07 16:06:09.514][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:06:09.516][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-12-07 16:06:09.519][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:09.520][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:09.521][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:09.527][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:09.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:09.530][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:09.531][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:09.532][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.537][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.542][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:09.547][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:09.548][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:09.550][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:09.556][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:09.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:09.558][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:09.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:09.561][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.566][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.571][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:09.576][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:09.577][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:09.578][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:09.584][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:09.586][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:09.587][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:09.588][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:09.589][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.594][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.599][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:09.605][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:06:09.607][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:09.608][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:09.609][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:09.615][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:09.616][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:09.617][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:09.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:09.620][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:09.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:09.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.625][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:09.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:09.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.630][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:09.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:09.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.635][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:09.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:09.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.640][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:09.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:09.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.645][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:09.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:09.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.650][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:09.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:09.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.655][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:09.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:09.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.661][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:09.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:09.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.666][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:09.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:09.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.671][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:09.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:09.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.682][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:09.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:09.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.687][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:09.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:09.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.692][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:09.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:09.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.697][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:09.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:09.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.702][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:09.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:09.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.707][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.712][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.717][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:09.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:09.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.722][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:09.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:09.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.727][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:09.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:09.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.732][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:09.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:09.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.737][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:09.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:09.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.742][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:09.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:09.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.747][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:09.748][private$selectFields]
biodb.TRACE[2024-12-07 16:06:09.749][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:09.751][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:09.752][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:09.753][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:09.754][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:09.756][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.757][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.758][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:09.759][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:09.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.762][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.763][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:09.764][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:09.765][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.767][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.768][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:09.769][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:09.770][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.772][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.773][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:09.774][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:09.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.776][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.778][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:09.779][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:09.780][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.781][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.783][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:09.784][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:09.785][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.786][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.788][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:09.789][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:09.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.791][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.792][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.794][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.796][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.797][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:09.799][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:09.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.801][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.803][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:09.804][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:09.805][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.806][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.808][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:09.809][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:09.810][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.812][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.813][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:09.814][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:09.815][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.817][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.818][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:09.819][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:09.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.821][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.823][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:09.824][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:09.825][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.826][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.827][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:09.829][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:09.830][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.831][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.833][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:09.834][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:09.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.836][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.837][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:09.839][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:09.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.841][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.842][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:09.844][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:09.845][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.846][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.847][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:09.849][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:09.850][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.851][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.852][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.854][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.856][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.857][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:09.859][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:09.860][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.861][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.862][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:09.864][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:09.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.866][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.868][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:09.869][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:09.870][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.871][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.873][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:09.874][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:09.875][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:09.876][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:09.878][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.879][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.880][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:09.881][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:09.882][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.884][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.885][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:09.886][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:09.887][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.889][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.890][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:09.891][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:09.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.894][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.895][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:09.896][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:09.897][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.898][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.900][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:09.901][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:09.902][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.903][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.905][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:09.906][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:09.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.908][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.910][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:09.911][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:09.912][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.913][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.914][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.916][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.918][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.919][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:09.921][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:09.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.923][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.924][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:09.926][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:09.927][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.928][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.929][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:09.931][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:09.932][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.933][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.934][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:06:09.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:09.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:09.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:09.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:09.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:09.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:09.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.951][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:09.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:09.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.956][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:09.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:09.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.961][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:09.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:09.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.966][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:09.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:09.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.971][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:09.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:09.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.976][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:09.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:09.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.981][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:09.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:09.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.986][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:09.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:09.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.991][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:09.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:09.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.996][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:09.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:09.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.001][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:10.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:10.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.007][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:10.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:10.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.012][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:10.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:10.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.017][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:10.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:10.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.022][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:10.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:10.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.027][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:10.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:10.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.033][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:10.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:10.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.038][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:10.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:10.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.043][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:10.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:10.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.048][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:10.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:10.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.053][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:10.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:10.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.058][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:10.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:10.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.063][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:10.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:10.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.068][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:10.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:10.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.073][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:10.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:10.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.078][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:10.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:10.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.083][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:10.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:10.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.093][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:10.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:10.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.098][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:10.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:10.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.103][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:10.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:10.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.108][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:10.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:10.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.113][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:10.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:10.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.118][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:10.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:10.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.131][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4648, 0, 4648, C30H50, InChI=1S/C30H50/c1-20(2)21-12-17-27(5)22(21)13-18-29(7)24(27)10-11-25-28(6)16-9-15-26(3,4)23(28)14-19-30(25,29)8/h21-25H,1,9-19H2,2-8H3/t21-,22+,23+,24-,25-,27+,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2024-12-07 16:06:10.132][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:10.134][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:10.135][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:10.141][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:10.142][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:10.143][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:10.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:10.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:10.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:10.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:10.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:10.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.156][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:10.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:10.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.160][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:10.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:10.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.165][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:10.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:10.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:10.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:10.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.175][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:10.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:10.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.180][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:10.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:10.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.185][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:10.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:10.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.190][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:10.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:10.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.195][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:10.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:10.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.200][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:10.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:10.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.205][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:10.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:10.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.210][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:10.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:10.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.215][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:10.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:10.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.220][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:10.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:10.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.225][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:10.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:10.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.230][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:10.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:10.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.235][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:10.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:10.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.240][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:10.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:10.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.245][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:10.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:10.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.250][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:10.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:10.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.255][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:10.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:10.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.260][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:10.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:10.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.265][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:10.267][private$selectFields]
biodb.TRACE[2024-12-07 16:06:10.268][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:10.269][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:10.270][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:10.271][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:10.273][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:10.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.275][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.276][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:10.278][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:10.279][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.280][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.281][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:10.283][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:10.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.285][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.286][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:10.288][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:10.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.290][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.291][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:10.293][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:10.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.295][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.296][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:10.298][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:10.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.300][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.301][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:10.302][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:10.304][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.305][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.306][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:10.307][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:10.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.310][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.311][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:10.312][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:10.314][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.315][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.316][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:10.318][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:10.319][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.320][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.321][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:10.323][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:10.324][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.325][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.326][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:10.327][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:10.329][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.330][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.331][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:10.332][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:10.334][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.335][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.336][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:10.337][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:10.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.340][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.341][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:10.342][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:10.344][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.345][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.346][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:10.347][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:10.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.350][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.351][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:10.352][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:10.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.355][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.356][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:10.357][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:10.358][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.360][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.361][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:10.362][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:10.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.365][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.366][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:10.367][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:10.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.370][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.371][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:10.372][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:10.373][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.375][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.376][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:10.377][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:10.378][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.379][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.381][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:10.382][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:10.383][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.384][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.386][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:10.387][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:10.388][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.389][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.391][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:10.392][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:10.393][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:10.394][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:10.396][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.397][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.398][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:10.399][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:10.401][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.402][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.403][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:10.404][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:10.406][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.407][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.408][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:10.409][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:10.410][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.412][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.413][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:10.414][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:10.415][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.417][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.418][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:10.419][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:10.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.422][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.423][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:10.424][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:10.425][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.427][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.428][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:10.429][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:10.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.432][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.433][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:10.434][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:10.435][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.437][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.438][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:10.439][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:10.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.441][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.443][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:10.444][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:10.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.446][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.448][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:10.449][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:10.450][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.451][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.453][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:06:10.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:10.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:10.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:10.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:10.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:10.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:10.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.469][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:10.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:10.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.474][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:10.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:10.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.480][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:10.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:10.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.485][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:10.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:10.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.490][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:10.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:10.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.495][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:10.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:10.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.505][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:10.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:10.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.510][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:10.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:10.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.515][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:10.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:10.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.520][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:10.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:10.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.525][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:10.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:10.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.531][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:10.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:10.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.536][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:10.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:10.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.541][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:10.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:10.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.546][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:10.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:10.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.551][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:10.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:10.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.556][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:10.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:10.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.561][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:10.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:10.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.566][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:10.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:10.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.571][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:10.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:10.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.576][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:10.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:10.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.581][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:10.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:10.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.586][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:10.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:10.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.591][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:10.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:10.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.596][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:10.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:10.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.601][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:10.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:10.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.606][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:10.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:10.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.611][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:10.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:10.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.616][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:10.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:10.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.621][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:10.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:10.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.626][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:10.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:10.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.631][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:10.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:10.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.636][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:10.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:10.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.649][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2024-12-07 16:06:10.651][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:10.652][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:10.653][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:10.659][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:10.660][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:10.661][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:10.663][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:10.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:10.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:10.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:10.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:10.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.674][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:10.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:10.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.679][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:10.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:10.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.684][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:10.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:10.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.689][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:10.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:10.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.694][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:10.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:10.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.699][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:10.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:10.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.704][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:10.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:10.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.709][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:10.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:10.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.714][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:10.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:10.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.719][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:10.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:10.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.724][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:10.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:10.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.729][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:10.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:10.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.734][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:10.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:10.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.739][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:10.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:10.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.744][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:10.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:10.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.749][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:10.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:10.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.754][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:10.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:10.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.759][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:10.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:10.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.764][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:10.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:10.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.769][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:10.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:10.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.774][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:10.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:10.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.779][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:10.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:10.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.784][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:10.785][private$selectFields]
biodb.TRACE[2024-12-07 16:06:10.786][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:10.788][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:10.789][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:10.790][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:10.791][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:10.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.794][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.795][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:10.796][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:10.798][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.799][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.800][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:10.801][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:10.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.804][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.805][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:10.806][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:10.807][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.808][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.810][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:10.811][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:10.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.813][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.815][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:10.816][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:10.817][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.818][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.820][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:10.821][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:10.822][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.823][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.824][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:10.826][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:10.827][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.828][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.829][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:10.831][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:10.832][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.833][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.834][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:10.836][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:10.837][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.838][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.839][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:10.841][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:10.842][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.843][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.844][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:10.846][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:10.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.848][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.849][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:10.851][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:10.852][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.853][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.854][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:10.855][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:10.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.858][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.859][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:10.860][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:10.862][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.863][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.864][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:10.865][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:10.867][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.868][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.869][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:10.870][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:10.871][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.873][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.874][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:10.875][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:10.876][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.878][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.879][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:10.880][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:10.881][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.883][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.884][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:10.885][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:10.886][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.888][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.889][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:10.890][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:10.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.892][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.894][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:10.895][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:10.896][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.897][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.899][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:10.900][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:10.901][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.902][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.904][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:10.905][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:10.906][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.907][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.909][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:06:10.914][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:06:10.916][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:10.917][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:10.919][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.920][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.921][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:10.922][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:10.924][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.925][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.926][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:10.927][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:10.928][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.930][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.931][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:10.932][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:10.933][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.935][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.936][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:10.937][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:10.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.939][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.941][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:10.942][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:10.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.944][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.946][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:10.947][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:10.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.949][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.950][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:10.952][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:10.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.954][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.955][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:10.957][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:10.958][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.959][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.960][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:10.961][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:10.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.964][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.965][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:10.966][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:10.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.969][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.970][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:06:10.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:10.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:10.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:10.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:10.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.981][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:10.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:10.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.986][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:10.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:10.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.991][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:10.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:10.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.996][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:10.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:10.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.001][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:11.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:11.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.006][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:11.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:11.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.011][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:11.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:11.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.017][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:11.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:11.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.021][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:11.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:11.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.026][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:11.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:11.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.032][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:11.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:11.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.037][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:11.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:11.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.042][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:11.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:11.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.047][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:11.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:11.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.052][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:11.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:11.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.057][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:11.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:11.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.062][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:11.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:11.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.067][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:11.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:11.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.072][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:11.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:11.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.077][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:11.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:11.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.083][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:11.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:11.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.088][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:11.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:11.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.093][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:11.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:11.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.099][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:11.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:11.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.104][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:11.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:11.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.109][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:11.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:11.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.114][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:11.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:11.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.119][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:11.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:11.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.124][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:11.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:11.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.129][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:11.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:11.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.134][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:11.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:11.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.146][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [62447, 0, 62447, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-29(7)24(23)13-14-26-28(6)18-10-17-27(4,5)25(28)16-20-30(26,29)8/h11,23-26H,3,9-10,12-20H2,1-2,4-8H3/t23-,24-,25+,26-,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2024-12-07 16:06:11.148][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:06:11.149][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:06:11.153][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:11.154][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:11.155][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:11.162][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:11.163][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:11.164][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:11.165][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:11.168][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:06:11.173][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:06:11.174][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2024-12-07 16:06:11.176][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:06:11.178][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2024-12-07 16:06:11.181][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:11.182][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:11.183][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:11.189][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:11.190][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:11.191][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:11.192][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:11.194][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:11.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:11.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.199][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:11.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:11.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.204][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:11.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:11.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:11.209][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:11.210][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:11.211][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:11.218][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:11.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:11.220][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:11.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:11.222][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:11.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:11.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.228][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:11.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:11.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.233][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:11.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:11.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:11.238][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:11.239][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:11.240][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:11.246][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:11.247][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:11.249][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:11.250][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:11.251][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:11.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:11.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.256][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:11.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:11.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.261][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:11.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:11.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:11.267][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:06:11.269][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:11.270][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:11.271][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:11.277][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:11.278][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:11.279][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:11.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:11.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:11.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:11.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:11.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:11.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.292][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:11.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:11.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.297][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:11.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:11.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.302][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:11.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:11.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.307][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:11.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:11.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.312][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:11.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:11.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.317][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:11.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:11.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.322][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:11.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:11.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.327][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:11.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:11.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.337][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:11.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:11.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.342][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:11.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:11.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.348][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:11.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:11.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.353][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:11.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:11.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.358][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:11.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:11.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.363][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:11.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:11.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.368][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:11.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:11.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.373][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:11.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:11.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.378][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:11.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:11.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.383][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:11.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:11.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.388][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:11.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:11.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.393][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:11.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:11.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.398][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:11.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:11.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.403][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:11.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:11.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.408][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:11.409][private$selectFields]
biodb.TRACE[2024-12-07 16:06:11.410][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:11.411][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:11.412][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:11.414][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:11.415][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:11.416][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.417][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.419][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:11.420][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:11.421][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.422][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.424][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:11.425][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:11.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.427][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.428][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:11.430][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:11.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.432][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.433][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:11.435][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:11.436][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.437][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.438][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:11.440][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:11.441][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.442][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.443][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:11.445][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:11.446][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.447][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.448][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:11.450][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:11.451][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.452][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.453][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:11.455][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:11.456][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.457][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.458][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:11.460][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:11.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.462][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.463][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:11.465][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:11.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.467][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.468][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:11.470][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:11.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.472][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.473][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:11.475][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:11.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.477][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.479][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:11.480][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:11.481][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.483][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.484][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:11.485][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:11.486][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.487][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.489][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:11.490][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:11.491][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.492][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.494][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:11.495][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:11.496][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.497][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.499][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:11.500][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:11.501][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.502][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.503][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:11.505][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:11.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.507][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.508][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:11.510][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:11.511][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.512][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.513][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:11.515][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:11.516][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.517][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.518][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:11.520][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:11.521][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.522][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.523][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:11.525][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:11.526][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.527][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.528][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:11.530][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:11.531][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.532][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.533][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:11.534][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:11.536][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:11.537][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:11.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.539][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.541][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:11.542][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:11.543][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.544][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.546][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:11.547][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:11.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.549][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.551][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:11.552][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:11.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.554][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.556][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:11.557][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:11.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.559][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.561][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:11.562][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:11.563][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.564][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.566][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:11.567][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:11.568][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.569][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.571][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:11.572][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:11.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.574][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.576][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:11.577][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:11.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.579][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.580][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:11.582][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:11.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.584][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.585][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:11.587][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:11.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.589][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.590][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:11.592][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:11.593][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.594][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.596][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:06:11.597][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:11.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:11.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:11.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:11.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.607][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:11.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:11.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.612][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:11.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:11.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.617][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:11.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:11.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.622][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:11.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:11.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.627][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:11.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:11.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.632][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:11.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:11.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.637][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:11.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:11.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.642][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:11.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:11.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.647][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:11.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:11.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.652][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:11.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:11.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.657][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:11.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:11.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.662][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:11.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:11.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.667][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:11.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:11.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.673][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:11.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:11.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.678][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:11.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:11.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.682][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:11.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:11.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.688][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:11.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:11.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.693][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:11.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:11.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.697][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:11.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:11.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.703][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:11.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:11.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.708][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:11.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:11.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.713][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:11.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:11.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.718][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:11.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:11.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.723][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:11.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:11.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.728][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:11.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:11.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.733][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:11.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:11.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.738][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:11.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:11.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.748][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:11.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:11.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.753][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:11.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:11.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.758][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:11.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:11.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.763][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:11.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:11.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.768][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:11.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:11.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.773][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:11.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:11.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.778][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:11.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:11.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.791][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2024-12-07 16:06:11.792][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:11.793][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:11.794][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:11.800][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:11.802][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:11.803][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:11.804][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:11.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:11.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:11.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:11.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:11.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.815][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:11.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:11.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.820][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:11.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:11.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.825][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:11.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:11.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.830][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:11.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:11.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.835][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:11.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:11.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.840][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:11.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:11.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.845][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:11.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:11.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.850][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:11.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:11.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.855][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:11.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:11.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.859][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:11.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:11.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.864][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:11.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:11.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.869][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:11.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:11.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.874][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:11.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:11.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.879][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:11.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:11.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.884][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:11.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:11.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.889][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:11.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:11.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.894][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:11.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:11.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.899][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:11.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:11.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.904][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:11.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:11.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.909][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:11.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:11.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.914][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:11.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:11.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.919][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:11.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:11.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.924][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:11.925][private$selectFields]
biodb.TRACE[2024-12-07 16:06:11.926][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:11.927][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:11.928][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:11.930][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:11.931][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:11.932][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.933][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.935][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:11.936][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:11.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.938][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.940][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:11.941][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:11.942][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.943][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.944][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:11.946][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:11.947][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.948][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.949][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:11.951][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:11.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.953][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.954][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:11.956][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:11.957][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.958][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.959][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:11.961][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:11.962][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.963][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.964][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:11.965][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:11.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.968][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.969][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:11.970][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:11.972][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.973][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.974][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:11.975][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:11.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.978][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.979][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:11.980][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:11.981][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.983][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.984][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:11.985][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:11.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.987][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.989][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:11.990][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:11.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.992][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.994][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:11.995][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:11.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.997][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.998][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:12.000][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:12.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.002][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.003][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:12.005][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:12.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.007][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.008][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:12.010][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:12.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.012][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.013][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:12.015][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:12.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.017][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.018][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:12.019][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:12.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.022][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.023][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:12.024][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:12.026][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.027][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.028][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:12.029][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:12.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.032][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.033][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:12.034][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:12.035][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.037][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.038][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:12.039][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:12.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.042][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.043][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:12.044][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:12.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.046][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.048][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:06:12.049][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:06:12.050][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:12.051][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:12.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.054][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.055][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:12.056][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:12.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.059][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.060][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:12.061][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:12.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.064][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.065][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:12.066][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:12.067][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.068][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.070][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:12.071][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:12.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.073][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.075][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:12.076][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:12.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.078][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.079][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:12.081][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:12.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.083][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.084][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:12.086][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:12.087][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.088][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.089][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:12.091][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:12.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.093][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.094][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:12.095][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:12.097][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.098][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.099][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:12.100][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:12.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.103][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.104][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:06:12.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:12.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:12.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:12.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:12.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:12.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:12.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.120][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:12.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:12.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.125][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:12.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:12.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.130][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:12.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:12.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:12.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:12.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.140][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:12.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:12.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.145][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:12.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:12.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.156][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:12.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:12.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.161][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:12.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:12.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.165][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:12.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:12.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.171][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:12.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:12.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.175][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:12.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:12.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.180][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:12.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:12.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.185][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:12.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:12.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.190][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:12.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:12.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.195][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:12.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:12.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.200][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:12.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:12.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.205][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:12.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:12.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.210][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:12.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:12.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.215][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:12.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:12.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.220][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:12.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:12.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.225][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:12.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:12.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.230][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:12.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:12.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.235][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:12.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:12.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.240][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:12.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:12.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.245][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:12.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:12.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.250][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:12.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:12.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.255][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:12.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:12.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.260][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:12.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:12.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.265][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:12.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:12.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.270][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:12.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:12.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.283][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [91601, 0, 91601, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24?,25?/m0/s1, ...].
biodb.DEBUG[2024-12-07 16:06:12.284][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:12.285][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:12.286][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:12.292][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:12.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:12.295][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:12.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:12.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:12.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:12.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.302][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:12.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:12.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.307][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:12.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:12.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.312][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:12.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:12.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.317][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:12.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:12.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.322][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:12.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:12.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.327][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:12.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:12.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.332][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:12.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:12.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.337][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:12.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:12.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.342][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:12.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:12.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.347][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:12.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:12.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.352][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:12.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:12.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.357][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:12.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:12.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.362][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:12.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:12.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.367][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:12.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:12.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.372][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:12.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:12.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.377][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:12.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:12.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.382][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:12.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:12.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.387][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:12.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:12.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.392][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:12.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:12.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.397][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:12.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:12.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.402][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:12.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:12.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.407][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:12.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:12.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.412][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:12.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:12.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.417][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:12.418][private$selectFields]
biodb.TRACE[2024-12-07 16:06:12.419][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:12.421][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:12.422][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:12.423][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:12.424][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:12.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.427][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.428][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:12.429][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:12.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.432][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.433][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:12.434][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:12.436][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.437][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.438][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:12.439][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:12.441][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.442][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.443][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:12.444][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:12.446][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.447][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.448][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:12.449][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:12.450][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.452][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.453][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:12.454][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:12.455][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.457][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.458][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:12.459][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:12.460][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.462][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.463][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:12.464][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:12.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.467][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.468][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:12.469][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:12.470][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.472][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.473][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:12.474][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:12.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.477][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.478][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:12.479][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:12.480][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.482][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.483][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:12.484][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:12.485][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.487][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.488][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:12.489][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:12.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.492][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.493][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:12.494][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:12.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.497][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.498][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:12.499][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:12.500][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.502][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.503][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:12.504][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:12.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.507][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.508][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:12.509][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:12.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.512][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.513][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:12.514][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:12.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.517][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.518][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:12.519][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:12.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.522][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.523][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:12.524][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:12.525][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.527][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.528][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:12.529][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:12.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.532][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.533][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:12.534][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:12.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.537][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.538][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:12.539][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:12.540][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.542][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.543][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:06:12.544][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:06:12.545][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:12.547][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:12.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.549][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.550][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:12.552][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:12.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.554][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.555][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:12.562][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:12.563][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.565][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.566][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:12.567][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:12.568][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.570][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.571][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:12.572][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:12.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.575][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.576][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:12.577][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:12.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.579][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.581][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:12.582][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:12.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.584][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.586][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:12.587][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:12.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.589][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.591][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:12.592][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:12.593][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.594][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.595][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:12.597][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:12.598][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.599][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.600][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:12.602][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:12.603][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.604][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.605][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:06:12.607][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:12.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:12.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:12.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:12.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:12.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:12.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.622][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:12.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:12.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.627][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:12.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:12.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.632][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:12.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:12.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.637][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:12.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:12.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.642][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:12.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:12.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.647][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:12.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:12.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.652][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:12.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:12.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.658][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:12.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:12.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.663][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:12.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:12.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.668][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:12.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:12.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.673][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:12.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:12.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.678][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:12.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:12.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.683][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:12.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:12.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.688][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:12.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:12.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.693][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:12.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:12.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.699][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:12.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:12.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.704][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:12.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:12.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.709][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:12.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:12.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.714][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:12.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:12.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.720][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:12.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:12.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.725][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:12.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:12.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.731][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:12.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:12.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.736][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:12.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:12.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.741][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:12.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:12.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.747][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:12.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:12.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.752][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:12.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:12.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.757][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:12.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:12.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.762][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:12.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:12.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.767][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:12.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:12.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.772][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:12.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:12.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.785][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [95147, 0, 95147, C29H40N2O4, InChI=1S/C29H40N2O4/c1-3-18-16(2)14-22-20(18)10-11-21-19-6-4-8-26(33)30-13-5-7-24-28(34)27(29(35)31-24)25(32)12-9-17(19)15-23(21)22/h4,8,10-11,16-24,27H,3,5-7,9,12-15H2,1-2H3,(H,30,33)(H,31,35)/t16-,17-,18-,19+,20+,21-,22+,23+,24+,27?/m1/s1, ...].
biodb.DEBUG[2024-12-07 16:06:12.786][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:06:12.787][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:06:12.791][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:12.793][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:12.794][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:12.800][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:12.801][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:12.802][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:12.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:12.807][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:06:12.811][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:06:12.812][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2024-12-07 16:06:12.814][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:06:12.815][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2024-12-07 16:06:12.819][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:12.820][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:12.821][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:12.827][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:12.829][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:12.830][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:12.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:12.832][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:12.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:12.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.837][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:12.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:12.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.842][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:12.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:12.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:12.847][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:12.848][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:12.849][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:12.856][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:12.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:12.858][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:12.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:12.860][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:12.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:12.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.865][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:12.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:12.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.870][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:12.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:12.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:12.875][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:12.877][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:12.878][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:12.884][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:12.885][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:12.886][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:12.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:12.889][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:12.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:12.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.894][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:12.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:12.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.899][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:12.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:12.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:12.904][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:06:12.906][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:12.907][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:12.908][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:12.915][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:12.916][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:12.917][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:12.918][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:12.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:12.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:12.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:12.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:12.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.930][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:12.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:12.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.935][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:12.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:12.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.940][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:12.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:12.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.945][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:12.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:12.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.950][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:12.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:12.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.955][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:12.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:12.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.960][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:12.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:12.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.965][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:12.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:12.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.970][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:12.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:12.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.975][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:12.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:12.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.986][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:12.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:12.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.991][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:12.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:12.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.996][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:12.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:12.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.001][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:13.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:13.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.006][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:13.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:13.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.011][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:13.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:13.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.016][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:13.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:13.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.021][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:13.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:13.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.026][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:13.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:13.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.031][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:13.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:13.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.036][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:13.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:13.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.041][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:13.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:13.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.046][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:13.047][private$selectFields]
biodb.TRACE[2024-12-07 16:06:13.048][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:13.050][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:13.051][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:13.052][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:13.053][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:13.055][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.056][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.057][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:13.058][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:13.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.061][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.062][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:13.063][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:13.064][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.066][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.067][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:13.068][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:13.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.071][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.072][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:13.073][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:13.075][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.076][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.077][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:13.078][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:13.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.081][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.082][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:13.083][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:13.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.085][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.087][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:13.088][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:13.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.090][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.091][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:13.093][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:13.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.095][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.096][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:13.098][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:13.099][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.100][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.101][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:13.103][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:13.104][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.105][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.106][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:13.107][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:13.109][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.110][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.111][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:13.112][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:13.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.115][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.116][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:13.117][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:13.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.119][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.121][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:13.122][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:13.123][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.124][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.125][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:13.127][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:13.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.129][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.130][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:13.132][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:13.133][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.134][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.135][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:13.136][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:13.138][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.139][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.140][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:13.141][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:13.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.144][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.145][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:13.146][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:13.147][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.149][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.150][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:13.151][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:13.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.153][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.155][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:13.156][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:13.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.158][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.160][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:13.161][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:13.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.163][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.164][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:13.166][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:13.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.168][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.169][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:13.171][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:13.172][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:13.173][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:13.174][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.176][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.177][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:13.178][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:13.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.181][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.182][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:13.183][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:13.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.185][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.187][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:13.188][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:13.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.190][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.192][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:13.193][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:13.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.195][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.196][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:13.198][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:13.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.200][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.201][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:13.203][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:13.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.205][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.206][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:13.208][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:13.209][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.210][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.211][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:13.213][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:13.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.215][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.216][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:13.217][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:13.219][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.220][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.221][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:13.222][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:13.223][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.225][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.226][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:13.227][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:13.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.230][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.231][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:06:13.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:13.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:13.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:13.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:13.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:13.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:13.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.247][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:13.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:13.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.252][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:13.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:13.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.257][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:13.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:13.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.262][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:13.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:13.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.267][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:13.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:13.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.272][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:13.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:13.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.277][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:13.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:13.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.282][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:13.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:13.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.287][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:13.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:13.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.292][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:13.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:13.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.297][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:13.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:13.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.302][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:13.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:13.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.307][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:13.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:13.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.312][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:13.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:13.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.317][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:13.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:13.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.323][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:13.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:13.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.328][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:13.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:13.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.332][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:13.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:13.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.338][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:13.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:13.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.343][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:13.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:13.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.348][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:13.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:13.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.353][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:13.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:13.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.358][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:13.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:13.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.363][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:13.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:13.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.368][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:13.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:13.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.373][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:13.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:13.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.378][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:13.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:13.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.384][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:13.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:13.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.394][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:13.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:13.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.399][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:13.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:13.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.404][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:13.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:13.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.409][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:13.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:13.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.414][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:13.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:13.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.427][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [636, 0, 636, C24H26O6, InChI=1S/C24H26O6/c1-12(2)6-7-14-19-17(11-16(26)22(14)28-5)29-18-10-15(25)13-8-9-24(3,4)30-23(13)20(18)21(19)27/h6,10-11,25-26H,7-9H2,1-5H3, ...].
biodb.DEBUG[2024-12-07 16:06:13.428][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:13.429][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:13.430][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:13.436][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:13.437][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:13.438][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:13.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:13.441][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:13.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:13.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:13.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:13.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.451][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:13.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:13.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.455][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:13.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:13.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.460][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:13.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:13.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.465][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:13.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:13.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.470][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:13.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:13.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.475][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:13.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:13.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.480][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:13.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:13.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.485][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:13.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:13.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.490][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:13.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:13.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.494][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:13.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:13.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.499][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:13.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:13.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.504][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:13.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:13.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.509][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:13.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:13.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.514][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:13.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:13.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.519][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:13.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:13.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.524][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:13.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:13.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.529][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:13.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:13.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.534][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:13.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:13.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.538][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:13.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:13.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.543][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:13.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:13.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.548][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:13.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:13.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.553][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:13.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:13.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.558][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:13.559][private$selectFields]
biodb.TRACE[2024-12-07 16:06:13.561][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:13.562][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:13.563][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:13.564][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:13.566][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:13.567][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.568][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.569][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:13.570][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:13.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.573][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.574][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:13.575][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:13.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.578][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.579][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:13.580][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:13.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.582][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.584][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:13.585][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:13.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.587][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.589][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:13.590][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:13.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.592][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.593][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:13.595][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:13.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.597][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.598][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:13.600][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:13.601][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.602][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.603][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:13.605][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:13.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.607][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.608][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:13.609][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:13.611][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.612][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.613][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:13.614][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:13.616][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.617][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.618][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:13.619][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:13.620][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.622][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.623][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:13.624][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:13.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.627][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.628][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:13.629][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:13.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.631][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.633][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:13.634][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:13.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.636][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.638][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:13.639][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:13.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.641][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.642][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:13.644][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:13.645][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.646][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.647][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:13.649][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:13.650][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.651][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.652][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:13.654][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:13.655][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.656][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.657][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:13.658][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:13.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.661][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.662][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:13.663][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:13.664][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.666][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.667][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:13.668][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:13.669][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.670][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.672][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:13.673][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:13.674][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.675][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.677][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:13.678][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:13.679][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.680][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.682][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:06:13.683][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:06:13.684][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:13.685][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:13.687][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.688][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.689][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:13.690][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:13.691][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.693][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.694][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:13.695][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:13.696][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.697][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.699][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:13.700][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:13.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.702][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.704][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:13.705][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:13.706][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.707][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.708][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:13.710][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:13.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.712][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.713][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:13.715][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:13.716][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.717][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.718][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:13.720][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:13.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.722][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.723][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:13.724][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:13.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.727][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.728][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:13.729][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:13.730][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.732][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.733][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:13.734][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:13.735][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.736][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.738][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:06:13.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:13.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:13.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:13.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:13.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:13.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:13.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.755][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:13.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:13.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.760][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:13.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:13.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.765][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:13.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:13.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.770][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:13.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:13.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.775][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:13.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:13.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.780][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:13.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:13.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.786][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:13.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:13.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.796][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:13.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:13.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.801][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:13.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:13.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.806][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:13.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:13.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.811][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:13.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:13.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.816][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:13.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:13.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.822][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:13.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:13.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.827][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:13.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:13.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.832][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:13.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:13.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.837][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:13.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:13.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.842][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:13.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:13.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.847][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:13.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:13.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.852][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:13.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:13.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.857][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:13.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:13.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.862][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:13.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:13.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.867][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:13.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:13.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.872][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:13.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:13.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.877][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:13.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:13.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.882][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:13.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:13.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.887][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:13.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:13.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.892][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:13.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:13.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.897][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:13.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:13.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.902][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:13.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:13.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.907][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:13.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:13.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.919][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [64199, 0, 64199, C24H27ClN2O2, InChI=1S/C24H26N2O2.ClH/c27-24(28)20-9-10-23-22(16-20)21(17-25-23)8-4-5-13-26-14-11-19(12-15-26)18-6-2-1-3-7-18;/h1-3,6-7,9-11,16-17,25H,4-5,8,12-15H2,(H,27,28);1H, ...].
biodb.DEBUG[2024-12-07 16:06:13.920][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:13.921][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:13.923][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:13.929][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:13.930][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:13.931][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:13.932][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:13.934][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:13.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:13.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:13.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:13.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.944][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:13.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:13.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.949][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:13.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:13.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.954][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:13.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:13.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.959][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:13.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:13.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.963][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:13.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:13.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.968][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:13.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:13.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.973][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:13.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:13.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.978][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:13.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:13.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.983][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:13.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:13.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.988][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:13.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:13.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.993][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:13.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:13.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.998][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:14.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:14.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.003][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:14.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:14.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.008][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:14.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:14.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.013][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:14.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:14.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.018][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:14.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:14.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.023][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:14.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:14.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.028][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:14.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:14.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.033][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:14.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:14.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.038][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:14.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:14.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.043][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:14.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:14.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.048][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:14.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:14.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.053][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:14.054][private$selectFields]
biodb.TRACE[2024-12-07 16:06:14.055][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:14.057][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:14.058][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:14.059][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:14.060][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:14.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.063][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.064][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:14.065][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:14.067][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.068][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.069][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:14.070][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:14.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.073][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.074][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:14.075][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:14.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.078][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.079][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:14.080][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:14.081][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.083][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.084][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:14.085][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:14.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.088][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.089][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:14.090][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:14.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.092][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.094][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:14.095][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:14.096][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.097][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.098][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:14.100][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:14.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.102][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.103][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:14.105][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:14.106][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.107][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.108][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:14.110][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:14.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.112][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.114][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:14.115][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:14.116][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.117][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.119][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:14.120][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:14.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.122][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.124][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:14.125][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:14.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.127][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.129][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:14.130][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:14.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.132][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.134][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:14.135][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:14.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.138][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.139][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:14.140][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:14.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.143][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.144][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:14.145][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:14.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.148][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.149][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:14.150][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:14.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.153][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.154][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:14.156][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:14.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.158][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.159][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:14.161][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:14.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.163][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.165][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:14.166][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:14.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.169][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.170][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:14.171][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:14.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.174][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.175][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:14.176][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:14.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.179][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.180][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:06:14.181][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:06:14.182][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:14.184][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:14.185][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.186][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.187][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:14.189][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:14.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.191][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.192][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:14.193][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:14.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.196][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.197][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:14.198][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:14.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.206][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.207][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:14.208][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:14.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.211][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.212][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:14.213][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:14.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.216][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.217][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:14.218][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:14.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.221][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.222][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:14.223][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:14.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.226][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.227][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:14.228][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:14.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.231][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.232][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:14.233][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:14.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.235][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.237][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:14.238][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:14.239][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.240][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.242][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:06:14.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:14.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:14.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:14.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:14.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:14.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:14.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.258][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:14.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:14.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.263][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:14.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:14.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.268][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:14.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:14.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.273][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:14.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:14.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:14.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:14.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.282][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:14.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:14.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.288][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:14.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:14.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.292][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:14.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:14.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.297][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:14.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:14.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.303][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:14.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:14.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.307][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:14.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:14.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.312][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:14.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:14.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.317][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:14.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:14.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.322][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:14.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:14.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.328][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:14.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:14.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.333][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:14.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:14.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.338][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:14.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:14.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.343][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:14.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:14.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.348][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:14.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:14.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.353][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:14.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:14.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.358][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:14.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:14.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.363][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:14.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:14.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.368][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:14.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:14.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.373][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:14.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:14.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.378][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:14.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:14.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.383][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:14.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:14.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.388][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:14.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:14.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.393][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:14.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:14.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.398][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:14.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:14.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.403][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:14.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:14.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.415][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [65648, 0, 65648, C24H26O6, InChI=1S/C24H26O6/c1-13(2)9-10-23-20(27)22(28-5)11-14-19(26)18-15(25)7-6-8-16(18)29-24(14,23)17(12-22)21(3,4)30-23/h6-9,11,17,25H,10,12H2,1-5H3/t17-,22-,23-,24+/m0/s1, ...].
biodb.DEBUG[2024-12-07 16:06:14.416][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:06:14.418][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:06:14.428][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:14.430][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:14.431][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:14.437][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:14.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:14.440][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:14.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:14.445][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:06:14.449][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:06:14.451][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-12-07 16:06:14.452][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:06:14.454][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-12-07 16:06:14.458][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:06:14.462][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:06:14.464][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-12-07 16:06:14.465][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:06:14.467][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-12-07 16:06:14.470][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:14.471][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:14.472][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:14.478][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:14.479][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:14.480][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:14.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:14.483][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:14.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:14.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.488][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:14.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:14.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.493][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:14.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:14.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:14.498][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:14.499][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:14.500][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:14.506][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:14.507][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:14.508][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:14.509][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:14.511][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:14.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:14.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.516][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:14.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:14.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.521][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:14.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:14.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:14.526][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:14.527][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:14.528][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:14.534][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:14.535][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:14.536][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:14.537][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:14.539][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:14.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:14.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.544][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:14.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:14.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.549][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:14.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:14.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:14.554][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:06:14.556][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:14.557][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:14.558][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:14.564][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:14.565][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:14.566][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:14.567][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:14.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:14.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:14.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:14.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:14.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.579][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:14.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:14.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.584][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:14.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:14.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.589][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:14.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:14.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.594][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:14.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:14.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.598][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:14.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:14.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.603][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:14.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:14.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.608][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:14.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:14.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.619][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:14.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:14.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.624][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:14.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:14.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.629][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:14.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:14.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.634][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:14.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:14.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.638][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:14.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:14.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.643][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:14.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:14.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.648][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:14.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:14.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.653][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:14.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:14.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.658][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:14.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:14.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.663][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:14.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:14.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.668][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:14.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:14.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.673][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:14.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:14.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.678][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:14.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:14.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.683][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:14.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:14.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.688][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:14.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:14.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.693][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:14.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:14.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.698][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:14.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:14.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.703][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:14.704][private$selectFields]
biodb.TRACE[2024-12-07 16:06:14.705][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:14.707][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:14.708][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:14.709][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:14.710][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:14.712][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.713][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.714][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:14.715][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:14.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.718][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.719][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:14.720][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:14.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.722][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.724][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:14.725][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:14.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.727][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.728][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:14.730][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:14.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.732][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.733][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:14.735][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:14.736][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.737][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.738][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:14.739][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:14.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.742][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.743][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:14.744][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:14.745][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.746][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.748][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:14.749][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:14.750][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.751][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.752][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:14.754][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:14.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.756][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.757][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:14.759][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:14.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.761][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.762][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:14.763][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:14.764][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.766][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.767][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:14.768][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:14.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.770][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.772][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:14.773][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:14.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.775][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.777][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:14.778][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:14.779][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.780][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.781][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:14.783][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:14.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.785][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.786][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:14.787][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:14.789][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.790][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.791][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:14.792][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:14.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.795][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.796][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:14.797][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:14.798][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.799][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.801][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:14.802][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:14.803][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.804][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.805][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:14.807][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:14.808][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.809][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.810][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:14.812][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:14.813][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.814][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.815][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:14.816][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:14.818][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.819][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.820][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:14.821][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:14.822][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.824][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.825][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:14.826][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:14.827][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.828][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.830][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:14.831][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:14.832][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.833][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.835][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:14.836][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:14.837][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:14.838][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:14.839][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.841][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.842][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:14.843][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:14.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.845][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.847][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:14.848][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:14.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.850][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.851][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:14.853][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:14.854][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.855][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.856][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:14.857][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:14.859][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.860][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.861][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:14.862][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:14.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.865][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.866][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:14.867][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:14.868][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.869][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.871][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:14.872][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:14.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.874][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.875][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:14.877][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:14.878][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.879][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.880][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:14.881][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:14.883][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.884][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.885][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:14.886][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:14.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.889][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.890][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:14.891][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:14.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.894][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.895][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:06:14.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:14.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:14.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:14.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:14.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:14.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:14.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.911][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:14.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:14.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.916][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:14.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:14.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.921][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:14.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:14.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.926][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:14.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:14.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.932][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:14.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:14.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.937][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:14.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:14.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.942][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:14.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:14.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.947][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:14.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:14.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.952][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:14.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:14.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.957][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:14.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:14.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.962][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:14.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:14.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.967][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:14.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:14.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.972][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:14.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:14.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.977][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:14.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:14.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.982][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:14.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:14.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.987][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:14.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:14.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.992][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:14.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:14.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.997][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:14.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:15.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.003][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:15.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:15.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.008][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:15.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:15.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.013][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:15.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:15.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.023][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:15.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:15.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.028][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:15.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:15.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.033][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:15.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:15.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.038][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:15.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:15.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.043][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:15.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:15.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.048][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:15.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:15.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.053][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:15.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:15.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.058][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:15.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:15.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.063][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:15.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:15.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.068][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:15.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:15.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.073][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:15.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:15.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.078][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:15.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:15.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.091][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4648, 0, 4648, C30H50, InChI=1S/C30H50/c1-20(2)21-12-17-27(5)22(21)13-18-29(7)24(27)10-11-25-28(6)16-9-15-26(3,4)23(28)14-19-30(25,29)8/h21-25H,1,9-19H2,2-8H3/t21-,22+,23+,24-,25-,27+,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2024-12-07 16:06:15.092][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:15.093][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:15.094][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:15.101][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:15.102][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:15.103][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:15.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:15.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:15.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:15.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:15.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:15.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.116][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:15.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:15.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.121][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:15.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:15.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.126][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:15.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:15.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.131][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:15.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:15.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.136][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:15.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:15.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.141][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:15.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:15.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.147][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:15.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:15.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.151][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:15.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:15.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.156][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:15.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:15.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.161][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:15.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:15.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.166][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:15.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:15.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.171][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:15.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:15.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.176][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:15.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:15.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.180][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:15.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:15.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.185][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:15.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:15.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.190][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:15.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:15.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.195][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:15.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:15.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.200][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:15.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:15.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.205][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:15.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:15.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.210][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:15.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:15.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.215][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:15.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:15.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.219][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:15.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:15.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.224][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:15.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:15.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.229][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:15.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:15.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.234][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:15.235][private$selectFields]
biodb.TRACE[2024-12-07 16:06:15.236][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:15.237][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:15.239][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:15.240][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:15.241][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:15.242][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.243][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.245][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:15.246][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:15.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.248][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.249][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:15.251][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:15.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.253][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.254][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:15.256][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:15.257][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.258][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.259][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:15.260][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:15.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.263][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.264][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:15.265][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:15.266][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.267][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.269][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:15.270][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:15.271][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.272][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.273][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:15.275][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:15.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.277][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.279][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:15.280][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:15.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.282][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.284][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:15.285][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:15.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.287][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.289][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:15.290][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:15.291][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.292][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.294][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:15.295][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:15.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.297][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.299][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:15.300][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:15.301][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.302][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.304][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:15.305][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:15.306][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.307][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.309][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:15.310][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:15.311][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.312][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.314][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:15.315][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:15.316][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.317][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.319][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:15.320][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:15.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.322][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.324][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:15.325][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:15.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.327][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.329][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:15.330][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:15.331][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.332][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.333][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:15.335][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:15.336][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.337][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.338][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:15.340][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:15.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.342][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.343][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:15.345][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:15.346][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.347][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.348][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:15.350][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:15.351][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.352][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.354][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:15.355][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:15.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.357][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.358][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:15.360][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:15.361][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.362][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.363][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:15.365][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:15.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.367][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.368][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:15.370][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:15.371][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:15.372][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:15.374][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.375][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.376][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:15.377][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:15.379][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.380][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.381][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:15.382][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:15.384][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.385][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.386][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:15.387][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:15.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.390][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.391][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:15.392][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:15.393][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.395][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.396][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:15.397][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:15.398][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.400][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.401][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:15.402][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:15.403][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.405][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.406][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:15.407][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:15.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.410][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.411][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:15.412][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:15.413][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.415][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.416][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:15.417][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:15.418][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.420][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.421][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:15.428][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:15.429][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.430][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.432][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:15.433][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:15.434][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.435][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.437][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:06:15.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:15.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:15.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:15.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:15.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:15.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:15.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.453][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:15.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:15.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.458][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:15.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:15.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.463][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:15.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:15.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.469][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:15.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:15.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.474][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:15.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:15.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.479][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:15.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:15.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.484][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:15.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:15.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.489][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:15.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:15.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.494][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:15.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:15.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.499][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:15.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:15.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.504][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:15.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:15.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.509][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:15.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:15.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.515][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:15.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:15.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.520][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:15.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:15.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.525][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:15.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:15.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.530][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:15.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:15.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.535][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:15.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:15.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.540][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:15.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:15.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.545][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:15.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:15.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.551][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:15.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:15.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.556][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:15.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:15.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.561][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:15.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:15.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.566][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:15.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:15.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.572][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:15.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:15.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.577][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:15.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:15.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.583][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:15.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:15.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.588][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:15.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:15.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.593][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:15.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:15.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.598][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:15.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:15.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.603][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:15.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:15.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.608][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:15.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:15.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.613][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:15.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:15.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.618][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:15.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:15.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.632][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2024-12-07 16:06:15.633][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:15.634][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:15.635][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:15.642][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:15.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:15.644][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:15.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:15.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:15.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:15.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:15.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:15.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.657][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:15.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:15.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.662][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:15.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:15.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.667][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:15.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:15.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.672][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:15.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:15.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.677][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:15.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:15.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.682][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:15.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:15.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.687][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:15.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:15.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.693][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:15.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:15.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.698][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:15.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:15.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.703][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:15.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:15.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.708][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:15.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:15.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.713][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:15.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:15.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.718][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:15.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:15.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.723][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:15.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:15.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.729][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:15.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:15.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.734][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:15.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:15.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.739][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:15.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:15.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.744][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:15.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:15.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.749][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:15.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:15.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.754][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:15.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:15.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.759][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:15.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:15.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.765][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:15.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:15.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.770][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:15.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:15.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.775][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:15.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:15.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.780][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:15.781][private$selectFields]
biodb.TRACE[2024-12-07 16:06:15.782][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:15.783][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:15.785][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:15.786][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:15.787][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:15.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.790][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.791][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:15.792][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:15.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.795][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.796][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:15.797][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:15.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.800][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.801][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:15.803][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:15.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.805][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.806][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:15.808][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:15.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.810][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.811][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:15.813][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:15.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.815][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.816][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:15.818][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:15.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.820][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.821][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:15.823][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:15.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.825][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.826][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:15.828][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:15.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.830][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.831][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:15.833][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:15.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.835][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.836][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:15.838][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:15.839][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.846][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.847][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:15.848][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:15.850][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.851][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.852][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:15.853][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:15.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.856][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.857][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:15.858][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:15.860][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.861][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.862][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:15.863][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:15.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.866][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.867][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:15.868][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:15.870][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.871][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.872][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:15.873][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:15.874][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.876][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.877][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:15.878][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:15.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.881][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.882][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:15.883][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:15.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.886][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.887][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:15.888][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:15.890][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.891][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.892][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:15.893][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:15.895][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.896][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.897][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:15.898][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:15.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.901][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.902][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:15.903][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:15.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.906][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.907][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:15.908][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:15.909][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.911][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.912][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:15.913][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:15.915][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.916][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.917][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:15.918][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:15.919][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.921][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.922][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:06:15.923][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:06:15.924][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:15.926][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:15.927][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.928][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.929][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:15.931][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:15.932][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.933][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.934][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:15.936][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:15.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.938][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.939][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:15.941][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:15.942][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.943][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.944][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:15.946][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:15.947][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.948][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.949][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:15.950][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:15.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.953][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.954][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:15.955][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:15.957][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.958][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.959][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:15.960][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:15.962][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.963][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.964][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:15.965][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:15.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.968][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.969][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:15.970][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:15.972][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.973][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.974][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:15.975][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:15.977][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.978][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.979][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:06:15.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:15.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:15.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.985][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:15.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:15.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:15.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:15.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.996][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:15.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:15.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.001][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:16.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:16.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.006][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:16.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:16.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.011][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.016][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.021][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.026][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:16.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:16.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.031][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:16.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:16.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.036][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:16.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:16.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.042][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:16.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:16.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.047][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:16.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:16.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.052][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:16.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:16.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.057][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:16.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:16.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.063][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:16.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:16.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.068][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:16.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:16.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.073][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:16.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:16.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.078][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:16.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:16.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.083][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:16.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:16.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.088][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:16.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:16.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.093][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:16.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:16.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.098][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:16.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:16.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.104][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:16.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:16.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.109][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:16.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:16.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.114][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:16.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:16.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.119][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:16.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:16.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.124][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:16.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:16.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.129][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:16.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:16.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.134][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:16.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:16.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.139][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:16.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:16.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.144][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:16.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:16.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.157][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [62447, 0, 62447, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-29(7)24(23)13-14-26-28(6)18-10-17-27(4,5)25(28)16-20-30(26,29)8/h11,23-26H,3,9-10,12-20H2,1-2,4-8H3/t23-,24-,25+,26-,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2024-12-07 16:06:16.158][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:06:16.160][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:06:16.164][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:16.165][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:16.166][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:16.173][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:16.174][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:16.175][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:16.176][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:16.180][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:06:16.184][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:06:16.186][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2024-12-07 16:06:16.188][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:06:16.190][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2024-12-07 16:06:16.193][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:16.194][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:16.196][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:16.202][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:16.203][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:16.204][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:16.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:16.207][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:16.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:16.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.212][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:16.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:16.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.217][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:16.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:16.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:16.222][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:16.223][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:16.224][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:16.231][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:16.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:16.233][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:16.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:16.236][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:16.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:16.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.241][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:16.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:16.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.246][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:16.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:16.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:16.251][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:16.253][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:16.254][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:16.266][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:16.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:16.268][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:16.269][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:16.271][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:16.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:16.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.276][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:16.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:16.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.281][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:16.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:16.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:16.286][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:06:16.288][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:16.290][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:16.291][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:16.297][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:16.299][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:16.300][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:16.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:16.302][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:16.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:16.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:16.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:16.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.313][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:16.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:16.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.318][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:16.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:16.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.323][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.328][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.333][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:16.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:16.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.338][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:16.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:16.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.344][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:16.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:16.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.349][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:16.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:16.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.354][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:16.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:16.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.359][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:16.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:16.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.364][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:16.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:16.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.369][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:16.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:16.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.374][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:16.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:16.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.380][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:16.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:16.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.385][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:16.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:16.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.390][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:16.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:16.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.395][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:16.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:16.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.400][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:16.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:16.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.405][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:16.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:16.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.410][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:16.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:16.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.415][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:16.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:16.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.420][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:16.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:16.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.425][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:16.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:16.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.430][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:16.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:16.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.435][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:16.437][private$selectFields]
biodb.TRACE[2024-12-07 16:06:16.438][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:16.439][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:16.440][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:16.441][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:16.443][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:16.444][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.445][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.446][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:16.448][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:16.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.450][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.451][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.453][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.455][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.456][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:16.458][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:16.459][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.460][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.461][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:16.463][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:16.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.465][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.466][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:16.468][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:16.469][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.470][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.471][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:16.473][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:16.474][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.475][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.477][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:16.478][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:16.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.481][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.482][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:16.483][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:16.485][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.486][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.487][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:16.488][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:16.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.491][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.493][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:16.494][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:16.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.497][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.498][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:16.499][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:16.501][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.502][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.503][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:16.505][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:16.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.507][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.509][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:16.510][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:16.512][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.513][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.514][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:16.516][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:16.517][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.518][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.519][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.521][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.522][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.523][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.525][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:16.526][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:16.527][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.529][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.530][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:16.531][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:16.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.534][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.535][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:16.536][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:16.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.539][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.540][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:16.541][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:16.543][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.544][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.545][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:16.546][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:16.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.549][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.550][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:16.551][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:16.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.554][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.555][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:16.556][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:16.557][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.559][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.560][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:16.561][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:16.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.564][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.565][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:16.566][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:16.567][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.569][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.570][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:16.571][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:16.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.574][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.575][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:16.576][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:16.577][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:16.579][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:16.580][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.581][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.582][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:16.584][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:16.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.586][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.587][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.589][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.591][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.592][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:16.594][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:16.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.596][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.597][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:16.599][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:16.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.601][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.602][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:16.603][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:16.605][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.606][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.607][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:16.608][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:16.610][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.611][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.612][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:16.613][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:16.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.616][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.617][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:16.618][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:16.620][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.621][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.622][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:16.623][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:16.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.626][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.627][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:16.628][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:16.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.631][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.632][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:16.633][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:16.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.636][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.637][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:06:16.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:16.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:16.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.644][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:16.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:16.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:16.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:16.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.654][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:16.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:16.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.659][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:16.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:16.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.664][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:16.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:16.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.669][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.674][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.706][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.711][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:16.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:16.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.716][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:16.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:16.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.721][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:16.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:16.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.726][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:16.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:16.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.731][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:16.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:16.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.736][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:16.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:16.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.741][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:16.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:16.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.746][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:16.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:16.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.751][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:16.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:16.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.756][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:16.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:16.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.761][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:16.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:16.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.766][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:16.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:16.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.771][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:16.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:16.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.776][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:16.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:16.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.781][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:16.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:16.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.786][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:16.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:16.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.791][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:16.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:16.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.796][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:16.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:16.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.801][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:16.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:16.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.806][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:16.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:16.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.811][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:16.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:16.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.817][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:16.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:16.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.821][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:16.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:16.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.826][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:16.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:16.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.832][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:16.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:16.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.837][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:16.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:16.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.842][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:16.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:16.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.855][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2024-12-07 16:06:16.856][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:16.857][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:16.858][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:16.865][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:16.866][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:16.867][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:16.868][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:16.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:16.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:16.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:16.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:16.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.880][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:16.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:16.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.885][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:16.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:16.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.890][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.895][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.900][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:16.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:16.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.905][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:16.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:16.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.910][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:16.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:16.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.915][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:16.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:16.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.920][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:16.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:16.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.925][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:16.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:16.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.930][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:16.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:16.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.935][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:16.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:16.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.940][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:16.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:16.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.945][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:16.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:16.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.950][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:16.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:16.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.956][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:16.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:16.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.961][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:16.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:16.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.966][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:16.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:16.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.971][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:16.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:16.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.976][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:16.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:16.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.981][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:16.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:16.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.986][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:16.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:16.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.991][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:16.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:16.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.997][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:16.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:16.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.002][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:17.003][private$selectFields]
biodb.TRACE[2024-12-07 16:06:17.005][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:17.006][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:17.007][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:17.008][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:17.010][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:17.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.012][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.014][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:17.015][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:17.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.018][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.019][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.020][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.023][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.024][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:17.026][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:17.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.028][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.029][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:17.031][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:17.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.033][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.034][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:17.035][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:17.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.038][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.039][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:17.041][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:17.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.044][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.045][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.047][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.049][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.051][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.053][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.055][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.057][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:17.058][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:17.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.061][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.063][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:17.064][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:17.066][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.067][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.068][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:17.069][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:17.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.072][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.073][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:17.074][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:17.075][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.077][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.078][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:17.079][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:17.081][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.082][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.083][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:17.084][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:17.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.087][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.088][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.089][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.092][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.094][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:17.095][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:17.096][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.097][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.098][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:17.100][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:17.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.102][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.103][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:17.105][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:17.106][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.108][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.109][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:17.111][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:17.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.114][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.115][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.117][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.124][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.126][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.127][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.130][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.131][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:17.132][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:17.133][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.134][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.136][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:17.137][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:17.138][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.139][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.140][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:17.142][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:17.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.144][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.145][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:17.147][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:17.148][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.149][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.150][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:06:17.151][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:06:17.153][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:17.154][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:17.155][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.156][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.157][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:17.159][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:17.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.161][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.162][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.164][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.166][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.167][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:17.169][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:17.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.171][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.172][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:17.173][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:17.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.176][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.177][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:17.178][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:17.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.181][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.182][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.183][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.186][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.187][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.188][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.191][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.192][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:17.193][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:17.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.196][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.197][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:17.198][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:17.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.200][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.202][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:17.203][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:17.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.205][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.206][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:06:17.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:17.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:17.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.213][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:17.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:17.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:17.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:17.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.223][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:17.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:17.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.228][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:17.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:17.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.233][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:17.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:17.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.238][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.243][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.248][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.253][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:17.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:17.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.258][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:17.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:17.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.263][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:17.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:17.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.268][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:17.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:17.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.273][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:17.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:17.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.278][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:17.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:17.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.283][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:17.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:17.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.288][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:17.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:17.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.293][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:17.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:17.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.298][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.303][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.308][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.314][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.319][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.324][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.329][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:17.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:17.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.334][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:17.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:17.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.339][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:17.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:17.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.344][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:17.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:17.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.349][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:17.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:17.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.354][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:17.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:17.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.359][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:17.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:17.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.364][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:17.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:17.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.369][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:17.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:17.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.382][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [91601, 0, 91601, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24?,25?/m0/s1, ...].
biodb.DEBUG[2024-12-07 16:06:17.383][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:17.385][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:17.386][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:17.392][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:17.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:17.394][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:17.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:17.397][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:17.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:17.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:17.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:17.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.407][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:17.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:17.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.412][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:17.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:17.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.417][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.422][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.427][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:17.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:17.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.432][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:17.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:17.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.437][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:17.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:17.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.442][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:17.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:17.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.447][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:17.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:17.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.453][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:17.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:17.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.458][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:17.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:17.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.463][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:17.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:17.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.468][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.473][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.478][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.483][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.488][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:17.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:17.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.493][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:17.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:17.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.498][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:17.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:17.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.503][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:17.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:17.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.508][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:17.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:17.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.513][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:17.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:17.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.519][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:17.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:17.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.524][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:17.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:17.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.529][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:17.530][private$selectFields]
biodb.TRACE[2024-12-07 16:06:17.531][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:17.538][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:17.539][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:17.540][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:17.542][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:17.543][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.544][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.545][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:17.547][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:17.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.549][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.550][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.552][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.554][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.555][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:17.557][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:17.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.559][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.560][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:17.562][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:17.563][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.564][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.565][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:17.567][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:17.568][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.569][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.570][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:17.572][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:17.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.574][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.575][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.576][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.579][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.580][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.581][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.584][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.585][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:17.586][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:17.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.589][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.590][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:17.591][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:17.593][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.594][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.595][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:17.597][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:17.598][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.599][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.600][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:17.601][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:17.603][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.604][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.605][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:17.606][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:17.607][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.608][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.610][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:17.611][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:17.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.613][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.615][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.616][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.617][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.618][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.619][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:17.621][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:17.622][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.623][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.624][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:17.625][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:17.627][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.628][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.629][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:17.630][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:17.632][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.633][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.634][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:17.635][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:17.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.638][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.639][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.640][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.641][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.643][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.644][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.645][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.646][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.647][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.649][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:17.650][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:17.651][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.652][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.654][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:17.655][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:17.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.657][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.658][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:17.660][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:17.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.662][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.663][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:17.665][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:17.666][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.667][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.668][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:06:17.670][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:06:17.671][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:17.672][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:17.673][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.674][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.676][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:17.677][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:17.678][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.679][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.680][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.682][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.683][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.684][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.685][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:17.687][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:17.688][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.689][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.690][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:17.691][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:17.693][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.694][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.695][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:17.696][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:17.697][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.698][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.700][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.701][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.702][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.703][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.704][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.706][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.707][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.708][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.709][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:17.710][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:17.712][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.713][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.714][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:17.715][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:17.716][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.718][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.719][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:17.720][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:17.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.722][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.724][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:06:17.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:17.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:17.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:17.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:17.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:17.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:17.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.740][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:17.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:17.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.745][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:17.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:17.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.750][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:17.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:17.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.755][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.760][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.765][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.770][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:17.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:17.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.774][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:17.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:17.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.779][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:17.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:17.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.784][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:17.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:17.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.789][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:17.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:17.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.794][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:17.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:17.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.799][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:17.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:17.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.804][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:17.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:17.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.809][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:17.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:17.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.814][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.819][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.824][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.829][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.834][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.839][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.844][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:17.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:17.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.849][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:17.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:17.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.854][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:17.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:17.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.859][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:17.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:17.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.864][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:17.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:17.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.869][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:17.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:17.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.874][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:17.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:17.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.879][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:17.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:17.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.883][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:17.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:17.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.896][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [95147, 0, 95147, C29H40N2O4, InChI=1S/C29H40N2O4/c1-3-18-16(2)14-22-20(18)10-11-21-19-6-4-8-26(33)30-13-5-7-24-28(34)27(29(35)31-24)25(32)12-9-17(19)15-23(21)22/h4,8,10-11,16-24,27H,3,5-7,9,12-15H2,1-2H3,(H,30,33)(H,31,35)/t16-,17-,18-,19+,20+,21-,22+,23+,24+,27?/m1/s1, ...].
biodb.DEBUG[2024-12-07 16:06:17.897][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:06:17.898][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:06:17.902][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:17.904][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:17.905][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:17.911][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:17.912][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:17.913][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:17.914][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:17.917][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:06:17.922][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:06:17.923][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2024-12-07 16:06:17.925][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:06:17.926][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2024-12-07 16:06:17.930][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:17.931][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:17.932][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:17.943][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:17.944][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:17.945][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:17.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:17.948][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.953][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.958][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:17.963][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:17.964][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:17.965][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:17.971][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:17.972][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:17.973][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:17.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:17.976][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.981][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.986][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:17.991][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:17.992][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:17.993][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:17.999][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:18.000][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:18.001][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:18.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:18.004][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.009][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.014][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:18.019][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:06:18.021][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:18.022][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:18.023][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:18.029][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:18.030][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:18.031][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:18.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:18.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:18.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:18.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:18.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:18.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.044][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:18.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:18.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.049][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:18.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:18.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.054][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.059][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.064][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:18.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:18.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.069][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:18.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:18.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.074][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:18.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:18.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.078][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:18.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:18.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.083][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:18.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:18.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.088][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:18.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:18.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.093][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:18.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:18.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.098][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:18.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:18.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.103][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:18.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:18.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.108][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:18.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:18.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.113][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.118][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.123][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:18.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:18.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.127][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:18.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:18.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.132][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:18.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:18.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.137][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:18.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:18.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.142][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:18.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:18.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.147][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:18.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:18.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.152][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:18.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:18.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.157][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:18.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:18.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.162][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:18.163][private$selectFields]
biodb.TRACE[2024-12-07 16:06:18.164][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:18.165][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:18.166][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:18.167][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:18.169][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:18.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.171][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.172][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:18.174][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:18.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.176][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.177][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.178][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.181][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.182][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:18.183][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:18.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.185][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.187][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:18.188][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:18.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.190][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.191][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:18.193][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:18.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.195][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.196][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:18.198][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:18.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.200][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.201][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:18.202][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:18.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.205][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.206][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.207][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.208][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.210][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.211][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:18.212][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:18.213][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.215][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.216][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:18.217][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:18.218][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.219][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.221][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:18.222][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:18.223][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.224][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.225][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:18.227][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:18.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.229][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.230][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:18.232][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:18.233][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.234][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.235][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:18.236][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:18.238][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.239][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.240][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.241][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.242][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.244][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.245][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:18.246][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:18.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.248][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.250][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:18.251][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:18.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.253][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.254][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:18.256][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:18.257][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.258][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.259][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:18.261][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:18.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.263][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.264][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:18.265][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:18.266][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.268][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.269][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.270][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.271][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.272][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.274][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:18.275][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:18.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.277][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.278][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:18.280][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:18.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.282][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.283][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:18.285][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:18.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.287][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.288][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:18.289][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:18.290][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.292][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.293][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:18.294][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:18.295][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:18.297][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:18.298][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.299][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.300][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:18.301][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:18.302][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.304][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.305][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.306][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.308][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.310][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:18.311][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:18.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.313][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.314][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:18.316][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:18.317][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.318][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.319][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:18.320][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:18.322][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.323][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.324][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:18.325][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:18.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.328][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.329][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:18.330][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:18.331][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.332][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.334][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.335][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.336][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.337][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.338][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:18.344][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:18.346][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.347][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.348][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:18.350][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:18.351][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.352][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.353][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:18.354][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:18.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.357][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.358][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:06:18.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:18.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:18.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:18.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:18.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:18.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:18.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.374][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:18.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:18.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.379][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:18.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:18.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.384][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:18.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:18.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.389][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.394][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.399][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.404][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:18.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:18.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.408][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:18.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:18.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.413][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:18.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:18.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.418][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:18.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:18.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.423][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:18.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:18.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.428][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:18.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:18.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.433][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:18.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:18.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.438][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:18.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:18.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.443][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:18.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:18.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.448][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:18.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:18.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.453][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:18.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:18.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.458][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:18.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:18.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.463][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:18.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:18.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.468][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:18.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:18.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.473][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:18.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:18.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.478][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.482][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.487][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.492][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:18.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:18.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.497][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:18.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:18.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.502][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:18.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:18.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.507][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:18.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:18.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.512][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:18.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:18.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.517][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:18.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:18.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.522][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:18.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:18.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.527][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:18.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:18.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.532][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:18.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:18.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.545][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [636, 0, 636, C24H26O6, InChI=1S/C24H26O6/c1-12(2)6-7-14-19-17(11-16(26)22(14)28-5)29-18-10-15(25)13-8-9-24(3,4)30-23(13)20(18)21(19)27/h6,10-11,25-26H,7-9H2,1-5H3, ...].
biodb.DEBUG[2024-12-07 16:06:18.546][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:18.547][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:18.548][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:18.555][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:18.556][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:18.557][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:18.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:18.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:18.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:18.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:18.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:18.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.569][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:18.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:18.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.574][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:18.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:18.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.579][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.584][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.589][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:18.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:18.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.593][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:18.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:18.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.598][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:18.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:18.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.603][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:18.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:18.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.608][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:18.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:18.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.613][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:18.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:18.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.618][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:18.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:18.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.623][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:18.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:18.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.627][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:18.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:18.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.632][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:18.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:18.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.637][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.642][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.647][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:18.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:18.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.652][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:18.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:18.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.657][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:18.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:18.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.661][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:18.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:18.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.666][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:18.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:18.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.671][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:18.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:18.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.676][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:18.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:18.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.681][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:18.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:18.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.686][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:18.687][private$selectFields]
biodb.TRACE[2024-12-07 16:06:18.688][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:18.689][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:18.690][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:18.692][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:18.693][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:18.694][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.695][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.696][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:18.698][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:18.699][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.700][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.701][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.702][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.705][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.706][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:18.707][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:18.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.710][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.711][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:18.712][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:18.713][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.714][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.716][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:18.717][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:18.718][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.719][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.720][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:18.722][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:18.723][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.724][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.725][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:18.726][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:18.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.729][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.730][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.731][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.732][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.734][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.735][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:18.736][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:18.737][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.738][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.744][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:18.746][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:18.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.748][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.749][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:18.750][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:18.752][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.753][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.754][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:18.755][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:18.756][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.758][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.759][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:18.760][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:18.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.762][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.764][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:18.765][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:18.766][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.767][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.768][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.770][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.771][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.772][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.773][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:18.774][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:18.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.777][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.778][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:18.779][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:18.780][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.781][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.783][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:18.784][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:18.785][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.786][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.787][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:18.789][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:18.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.791][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.792][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:18.794][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:18.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.796][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.797][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.798][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.801][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.802][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:18.803][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:18.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.805][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.807][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:18.808][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:18.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.810][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.811][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:18.813][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:18.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.815][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.816][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:18.817][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:18.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.820][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.821][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:06:18.822][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:06:18.823][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:18.825][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:18.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.827][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.828][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:18.829][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:18.830][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.832][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.833][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.834][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.836][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.838][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:18.839][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:18.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.841][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.842][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:18.844][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:18.845][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.846][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.847][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:18.848][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:18.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.851][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.852][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:18.853][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:18.854][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.855][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.857][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.858][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.859][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.860][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.861][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:18.863][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:18.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.865][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.866][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:18.867][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:18.869][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.870][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.871][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:18.872][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:18.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.875][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.876][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:06:18.877][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:18.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:18.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:18.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:18.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:18.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:18.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.892][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:18.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:18.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.897][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:18.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:18.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.901][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:18.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:18.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.906][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.911][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.916][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.921][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:18.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:18.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.926][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:18.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:18.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.931][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:18.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:18.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.936][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:18.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:18.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.941][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:18.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:18.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.946][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:18.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:18.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.951][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:18.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:18.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.956][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:18.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:18.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.961][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:18.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:18.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.966][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:18.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:18.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.971][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:18.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:18.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.975][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:18.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:18.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.981][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.985][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.990][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.995][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:18.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:18.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.000][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:19.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:19.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.005][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:19.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:19.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.010][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:19.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:19.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.015][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:19.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:19.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.020][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:19.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:19.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.025][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:19.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:19.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.030][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:19.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:19.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.035][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:19.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:19.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.047][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [64199, 0, 64199, C24H27ClN2O2, InChI=1S/C24H26N2O2.ClH/c27-24(28)20-9-10-23-22(16-20)21(17-25-23)8-4-5-13-26-14-11-19(12-15-26)18-6-2-1-3-7-18;/h1-3,6-7,9-11,16-17,25H,4-5,8,12-15H2,(H,27,28);1H, ...].
biodb.DEBUG[2024-12-07 16:06:19.048][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:19.049][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:19.050][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:19.057][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:19.058][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:19.059][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:19.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:19.062][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:19.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:19.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:19.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:19.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.071][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:19.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:19.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.076][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:19.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:19.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.081][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:19.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:19.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.086][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:19.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:19.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.091][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:19.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:19.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.096][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:19.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:19.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.100][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:19.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:19.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.105][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:19.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:19.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.110][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:19.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:19.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.115][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:19.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:19.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.120][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:19.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:19.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.125][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:19.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:19.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.130][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:19.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:19.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.135][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:19.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:19.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.145][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:19.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:19.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.150][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:19.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:19.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.155][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:19.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:19.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.160][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:19.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:19.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.164][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:19.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:19.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.169][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:19.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:19.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.174][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:19.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:19.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.179][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:19.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:19.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.184][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:19.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:19.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.189][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:19.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:19.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.194][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:19.195][private$selectFields]
biodb.TRACE[2024-12-07 16:06:19.196][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:19.197][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:19.198][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:06:19.200][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:19.201][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:19.202][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.203][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.204][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:19.206][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:19.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.208][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.209][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:19.211][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:19.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.213][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.214][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:19.215][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:19.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.218][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.219][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:19.220][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:19.221][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.222][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.224][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:19.225][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:19.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.227][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.228][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:19.230][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:19.231][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.232][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.233][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:19.235][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:19.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.237][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.238][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:19.239][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:19.240][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.242][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.243][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:19.244][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:19.245][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.246][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.248][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:19.249][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:19.250][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.251][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.252][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:19.254][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:19.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.256][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.257][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:19.258][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:19.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.261][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.262][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:19.263][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:19.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.266][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.267][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:19.268][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:19.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.270][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.272][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:19.273][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:19.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.275][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.276][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:19.278][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:19.279][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.280][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.281][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:19.282][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:19.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.285][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.286][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:19.287][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:19.288][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.289][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.291][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:19.292][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:19.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.294][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.295][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:19.297][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:19.298][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.299][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.300][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:19.301][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:19.303][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.304][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.305][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:19.306][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:19.308][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.309][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.310][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:19.311][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:19.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.314][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.315][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:19.316][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:19.317][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.319][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.320][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:06:19.321][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:06:19.322][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.324][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.325][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:06:19.326][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:06:19.327][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:19.329][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:19.330][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.331][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.332][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:19.334][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:19.335][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.336][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.337][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:19.339][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:19.340][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.341][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.342][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:19.344][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:19.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.346][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.347][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:19.348][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:19.350][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.351][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.352][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:19.353][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:19.355][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.356][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.357][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:19.358][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:19.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.361][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.362][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:19.364][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:19.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.367][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.369][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:19.371][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:19.373][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.375][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.377][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:19.379][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:19.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.382][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.384][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:19.387][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:19.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.391][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.393][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:06:19.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:19.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:19.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:19.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:19.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:19.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:19.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.410][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:19.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:19.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.416][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:19.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:19.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.421][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:19.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:19.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.426][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:19.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:19.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.432][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:19.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:19.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.438][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:19.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:19.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.444][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:19.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:19.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.451][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:19.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:19.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.456][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:19.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:19.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.462][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:19.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:19.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.466][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:19.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:19.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.471][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:19.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:19.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.477][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:19.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:19.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.482][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:19.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:19.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.487][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:19.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:19.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.492][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:19.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:19.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.497][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:19.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:19.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.502][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:19.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:19.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.507][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:19.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:19.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.513][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:19.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:19.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.518][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:19.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:19.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.523][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:19.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:19.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.528][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:19.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:19.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.533][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:06:19.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:19.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.538][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:19.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:19.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.543][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:19.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:19.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.548][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:19.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:19.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.554][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:19.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:19.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.559][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:19.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:19.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.570][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:19.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:19.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.583][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [65648, 0, 65648, C24H26O6, InChI=1S/C24H26O6/c1-13(2)9-10-23-20(27)22(28-5)11-14-19(26)18-15(25)7-6-8-16(18)29-24(14,23)17(12-22)21(3,4)30-23/h6-9,11,17,25H,10,12H2,1-5H3/t17-,22-,23-,24+/m0/s1, ...].
biodb.DEBUG[2024-12-07 16:06:19.584][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:06:19.585][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-12-07 16:06:19.593][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-12-07 16:06:19.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-12-07 16:06:19.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.599][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-12-07 16:06:19.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-12-07 16:06:19.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:19.604][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-12-07 16:06:19.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-12-07 16:06:19.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:19.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-12-07 16:06:19.613][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-12-07 16:06:19.614][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2024-12-07 16:06:19.615][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2024-12-07 16:06:19.617][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-12-07 16:06:19.618][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:19.619][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:19.620][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:19.621][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:19.622][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:19.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1396 ]
>
> proc.time()
user system elapsed
90.558 3.925 241.851
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.12.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbChebi.Rcheck’
* using R version 4.4.2 (2024-10-31)
* using platform: x86_64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘biodbChebi/DESCRIPTION’ ... OK
* this is package ‘biodbChebi’ version ‘1.12.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbChebi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in ‘longtests’ ... OK
* checking tests in ‘longtests’ ...
Running ‘testthat.R’
OK
* DONE
Status: OK
biodbChebi.Rcheck/00install.out
* installing *source* package ‘biodbChebi’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (biodbChebi)